Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:46:38 (2808): wrapper (7.7.26015): starting
20:46:38 (2808): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 20:46:38] Arguments: --nthreads 12
[2025-07-27 20:46:38] Threads: 12
[2025-07-27 20:46:38] Checking for CVMFS
[2025-07-27 20:46:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 20:46:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 20:46:39] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 20:46:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 20:46:39] 2.11.2.0 2913 112740 97084 148829 1 58 15475292 20275201 1 130560 0 39443881 99.972 9835021 10838 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 20:46:39] CVMFS is ok
[2025-07-27 20:46:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 20:46:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 20:46:39] Further information can be found at the LHC@home message board.
[2025-07-27 20:46:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 20:46:39] Checking for apptainer binary...
[2025-07-27 20:46:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 20:46:39] Running /usr/bin/apptainer --version
[2025-07-27 20:46:39] apptainer version 1.3.2-1.el7
[2025-07-27 20:46:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 20:46:40] c-205-6.aglt2.org
[2025-07-27 20:46:40] apptainer works
[2025-07-27 20:46:40] Set ATHENA_PROC_NUMBER=12
[2025-07-27 20:46:40] Set ATHENA_CORE_NUMBER=12
[2025-07-27 20:46:40] Starting ATLAS job with PandaID=6747544553
[2025-07-27 20:46:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 22:42:53]  *** The last 200 lines of the pilot log: ***
[2025-07-27 22:42:53] 2025-07-28 02:42:20,335 | INFO     | mean x: 1753667060.0
[2025-07-27 22:42:53] 2025-07-28 02:42:20,335 | INFO     | mean y: 2673393.4867256638
[2025-07-27 22:42:53] 2025-07-28 02:42:20,335 | INFO     | -- intersect: -10289723854.106956
[2025-07-27 22:42:53] 2025-07-28 02:42:20,335 | INFO     | intersect: -10289723854.106956
[2025-07-27 22:42:53] 2025-07-28 02:42:20,335 | INFO     | chi2: 1.5417158822586197
[2025-07-27 22:42:53] 2025-07-28 02:42:20,336 | INFO     | sum of square deviations: 390582207.0
[2025-07-27 22:42:53] 2025-07-28 02:42:20,336 | INFO     | sum of deviations: 2774661829.499996
[2025-07-27 22:42:53] 2025-07-28 02:42:20,336 | INFO     | mean x: 1753666907.5
[2025-07-27 22:42:53] 2025-07-28 02:42:20,336 | INFO     | mean y: 2673795.287037037
[2025-07-27 22:42:53] 2025-07-28 02:42:20,337 | INFO     | -- intersect: -12455222500.78656
[2025-07-27 22:42:53] 2025-07-28 02:42:20,337 | INFO     | intersect: -12455222500.78656
[2025-07-27 22:42:53] 2025-07-28 02:42:20,337 | INFO     | chi2: 1.5438627265782485
[2025-07-27 22:42:53] 2025-07-28 02:42:20,337 | INFO     | current chi2=1.5438627265782485 (change=-0.13925032130328222 %)
[2025-07-27 22:42:53] 2025-07-28 02:42:20,337 | INFO     | right removable region: 107
[2025-07-27 22:42:53] 2025-07-28 02:42:20,338 | INFO     | sum of square deviations: 390582207.0
[2025-07-27 22:42:53] 2025-07-28 02:42:20,338 | INFO     | sum of deviations: -15147556203.5
[2025-07-27 22:42:53] 2025-07-28 02:42:20,338 | INFO     | mean x: 1753667212.5
[2025-07-27 22:42:53] 2025-07-28 02:42:20,338 | INFO     | mean y: 2720201.6203703703
[2025-07-27 22:42:53] 2025-07-28 02:42:20,339 | INFO     | -- intersect: 68013428798.95012
[2025-07-27 22:42:53] 2025-07-28 02:42:20,339 | INFO     | intersect: 68013428798.95012
[2025-07-27 22:42:53] 2025-07-28 02:42:20,339 | INFO     | chi2: 0.11469144514384863
[2025-07-27 22:42:53] 2025-07-28 02:42:20,339 | INFO     | current chi2=0.11469144514384863 (change=92.56079239607851 %)
[2025-07-27 22:42:53] 2025-07-28 02:42:20,339 | INFO     | sum of square deviations: 338804492.0
[2025-07-27 22:42:53] 2025-07-28 02:42:20,340 | INFO     | sum of deviations: -14241089341.0
[2025-07-27 22:42:53] 2025-07-28 02:42:20,340 | INFO     | mean x: 1753667365.0
[2025-07-27 22:42:53] 2025-07-28 02:42:20,340 | INFO     | mean y: 2717351.86407767
[2025-07-27 22:42:53] 2025-07-28 02:42:20,340 | INFO     | -- intersect: 73715239496.82152
[2025-07-27 22:42:53] 2025-07-28 02:42:20,340 | INFO     | intersect: 73715239496.82152
[2025-07-27 22:42:53] 2025-07-28 02:42:20,341 | INFO     | chi2: 0.09018028500361713
[2025-07-27 22:42:53] 2025-07-28 02:42:20,341 | INFO     | current chi2=0.09018028500361713 (change=21.37139357646862 %)
[2025-07-27 22:42:53] 2025-07-28 02:42:20,341 | INFO     | left removable region: 20
[2025-07-27 22:42:53] 2025-07-28 02:42:20,341 | INFO     | sum of square deviations: 204163828.0
[2025-07-27 22:42:53] 2025-07-28 02:42:20,341 | INFO     | sum of deviations: -7453791483.000001
[2025-07-27 22:42:53] 2025-07-28 02:42:20,342 | INFO     | mean x: 1753667487.0
[2025-07-27 22:42:53] 2025-07-28 02:42:20,342 | INFO     | mean y: 2698074.4137931033
[2025-07-27 22:42:53] 2025-07-28 02:42:20,342 | INFO     | -- intersect: 64027123491.31288
[2025-07-27 22:42:53] 2025-07-28 02:42:20,342 | INFO     | intersect: 64027123491.31288
[2025-07-27 22:42:53] 2025-07-28 02:42:20,342 | INFO     | chi2: 0.07491058875818801
[2025-07-27 22:42:53] 2025-07-28 02:42:20,342 | INFO     | -- intersect: 64027123491.31288
[2025-07-27 22:42:53] 2025-07-28 02:42:20,343 | INFO     | current memory leak: -36.51 B/s (using 87 data points, chi2=0.07)
[2025-07-27 22:42:53] 2025-07-28 02:42:20,343 | INFO     | could have reported an average CPU frequency of 2128 MHz (7 samples)
[2025-07-27 22:42:53] 2025-07-28 02:42:20,343 | INFO     | ..............................
[2025-07-27 22:42:53] 2025-07-28 02:42:20,343 | INFO     | . Timing measurements:
[2025-07-27 22:42:53] 2025-07-28 02:42:20,343 | INFO     | . get job = 0 s
[2025-07-27 22:42:53] 2025-07-28 02:42:20,344 | INFO     | . initial setup = 2 s
[2025-07-27 22:42:53] 2025-07-28 02:42:20,344 | INFO     | . payload setup = 9 s
[2025-07-27 22:42:53] 2025-07-28 02:42:20,344 | INFO     | . stage-in = 0 s
[2025-07-27 22:42:53] 2025-07-28 02:42:20,344 | INFO     | . payload execution = 6892 s
[2025-07-27 22:42:53] 2025-07-28 02:42:20,345 | INFO     | . stage-out = 0 s
[2025-07-27 22:42:53] 2025-07-28 02:42:20,345 | INFO     | . log creation = 0 s
[2025-07-27 22:42:53] 2025-07-28 02:42:20,345 | INFO     | ..............................
[2025-07-27 22:42:53] 2025-07-28 02:42:20,519 | WARNING  | process 12930 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 22:42:53] 2025-07-28 02:42:20,519 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747544553/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 22:42:53] 2025-07-28 02:42:20,520 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747544553/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 22:42:53] 2025-07-28 02:42:20,521 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3834720 B
[2025-07-27 22:42:53] 2025-07-28 02:42:20,521 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15773 B
[2025-07-27 22:42:53] 2025-07-28 02:42:20,521 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 22:42:53] 2025-07-28 02:42:20,537 | INFO     | sufficient remaining disk space (29423042560 B)
[2025-07-27 22:42:53] 2025-07-28 02:42:20,537 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-27 22:42:53] 2025-07-28 02:42:20,538 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6747544553: 4149480 B (within 2537553920 B limit)
[2025-07-27 22:42:53] 2025-07-28 02:42:20,538 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6747544553/HITS.45758484._000029.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-27 22:42:53] 2025-07-28 02:42:20,538 | INFO     | total size of present files: 0 B (workdir size: 4149480 B)
[2025-07-27 22:42:53] 2025-07-28 02:42:20,539 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6747544553/HITS.45758484._000029.pool.root.1 since it does not exist
[2025-07-27 22:42:53] 2025-07-28 02:42:20,630 | INFO     | number of running child processes to parent process 12930: 1
[2025-07-27 22:42:53] 2025-07-28 02:42:20,630 | INFO     | maximum number of monitored processes: 6
[2025-07-27 22:42:53] 2025-07-28 02:42:20,630 | INFO     | aborting job monitoring since job object (job id=6747544553) has expired
[2025-07-27 22:42:53] 2025-07-28 02:42:20,656 | INFO     | 
[2025-07-27 22:42:53] 2025-07-28 02:42:20,657 | INFO     | job summary report
[2025-07-27 22:42:53] 2025-07-28 02:42:20,657 | INFO     | --------------------------------------------------
[2025-07-27 22:42:53] 2025-07-28 02:42:20,657 | INFO     | PanDA job id: 6747544553
[2025-07-27 22:42:53] 2025-07-28 02:42:20,657 | INFO     | task id: 45758484
[2025-07-27 22:42:53] 2025-07-28 02:42:20,657 | INFO     | errors: (none)
[2025-07-27 22:42:53] 2025-07-28 02:42:20,657 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 22:42:53] 2025-07-28 02:42:20,658 | INFO     | pilot state: finished 
[2025-07-27 22:42:53] 2025-07-28 02:42:20,658 | INFO     | transexitcode: 0
[2025-07-27 22:42:53] 2025-07-28 02:42:20,658 | INFO     | exeerrorcode: 0
[2025-07-27 22:42:53] 2025-07-28 02:42:20,658 | INFO     | exeerrordiag: 
[2025-07-27 22:42:53] 2025-07-28 02:42:20,658 | INFO     | exitcode: 0
[2025-07-27 22:42:53] 2025-07-28 02:42:20,658 | INFO     | exitmsg: OK
[2025-07-27 22:42:53] 2025-07-28 02:42:20,659 | INFO     | cpuconsumptiontime: 76589 s
[2025-07-27 22:42:53] 2025-07-28 02:42:20,659 | INFO     | nevents: 400
[2025-07-27 22:42:53] 2025-07-28 02:42:20,659 | INFO     | neventsw: 0
[2025-07-27 22:42:53] 2025-07-28 02:42:20,659 | INFO     | pid: 12930
[2025-07-27 22:42:53] 2025-07-28 02:42:20,659 | INFO     | pgrp: 12930
[2025-07-27 22:42:53] 2025-07-28 02:42:20,659 | INFO     | corecount: 12
[2025-07-27 22:42:53] 2025-07-28 02:42:20,659 | INFO     | event service: False
[2025-07-27 22:42:53] 2025-07-28 02:42:20,660 | INFO     | sizes: {0: 2397468, 5: 2397730, 11: 2397786, 6905: 2433947, 6906: 2433947, 6911: 2434141}
[2025-07-27 22:42:53] 2025-07-28 02:42:20,660 | INFO     | --------------------------------------------------
[2025-07-27 22:42:53] 2025-07-28 02:42:20,660 | INFO     | 
[2025-07-27 22:42:53] 2025-07-28 02:42:20,660 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 22:42:53] 2025-07-28 02:42:20,685 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 22:42:53] 2025-07-28 02:42:20,686 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 22:42:53] 2025-07-28 02:42:20,686 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 22:42:53] 2025-07-28 02:42:20,686 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 22:42:53] 2025-07-28 02:42:20,686 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 22:42:53] 2025-07-28 02:42:20,686 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 22:42:53] 2025-07-28 02:42:20,687 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 22:42:53] 2025-07-28 02:42:20,687 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 22:42:53] 2025-07-28 02:42:20,687 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 22:42:53] 2025-07-28 02:42:20,687 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 22:42:53] 2025-07-28 02:42:20,687 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 22:42:53] 2025-07-28 02:42:20,687 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 22:42:53] 2025-07-28 02:42:20,688 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 22:42:53] 2025-07-28 02:42:20,688 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 22:42:53] 2025-07-28 02:42:20,688 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 22:42:53] 2025-07-28 02:42:20,688 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 22:42:53] 2025-07-28 02:42:20,688 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 22:42:53] 2025-07-28 02:42:20,688 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 22:42:53] 2025-07-28 02:42:20,689 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 22:42:53] 2025-07-28 02:42:20,689 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 22:42:53] 2025-07-28 02:42:20,689 | INFO     | job 6747544553 has completed (purged errors)
[2025-07-27 22:42:53] 2025-07-28 02:42:20,689 | INFO     | overall cleanup function is called
[2025-07-27 22:42:53] 2025-07-28 02:42:21,697 | INFO     | --- collectZombieJob: --- 10, [12930]
[2025-07-27 22:42:53] 2025-07-28 02:42:21,697 | INFO     | zombie collector waiting for pid 12930
[2025-07-27 22:42:53] 2025-07-28 02:42:21,697 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 22:42:53] 2025-07-28 02:42:21,697 | INFO     | collected zombie processes
[2025-07-27 22:42:53] 2025-07-28 02:42:21,697 | INFO     | will attempt to kill all subprocesses of pid=12930
[2025-07-27 22:42:53] 2025-07-28 02:42:21,788 | INFO     | process IDs to be killed: [12930] (in reverse order)
[2025-07-27 22:42:53] 2025-07-28 02:42:21,842 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 22:42:53] 2025-07-28 02:42:21,842 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 22:42:53] 2025-07-28 02:42:21,846 | INFO     | did not find any defunct processes belonging to 12930
[2025-07-27 22:42:53] 2025-07-28 02:42:21,849 | INFO     | did not find any defunct processes belonging to 12930
[2025-07-27 22:42:53] 2025-07-28 02:42:21,849 | INFO     | ready for new job
[2025-07-27 22:42:53] 2025-07-28 02:42:21,850 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 22:42:53] 2025-07-28 02:42:21,851 | INFO     | ***************************************
[2025-07-27 22:42:53] 2025-07-28 02:42:21,851 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 22:42:53] 2025-07-28 02:42:21,851 | INFO     | ***************************************
[2025-07-27 22:42:53] 2025-07-28 02:42:21,851 | INFO     | 
[2025-07-27 22:42:53] 2025-07-28 02:42:21,852 | INFO     | architecture information:
[2025-07-27 22:42:53] 2025-07-28 02:42:21,852 | INFO     | executing command: cat /etc/os-release
[2025-07-27 22:42:53] 2025-07-28 02:42:21,868 | INFO     | cat /etc/os-release:
[2025-07-27 22:42:53] NAME="CentOS Linux"
[2025-07-27 22:42:53] VERSION="7 (Core)"
[2025-07-27 22:42:53] ID="centos"
[2025-07-27 22:42:53] ID_LIKE="rhel fedora"
[2025-07-27 22:42:53] VERSION_ID="7"
[2025-07-27 22:42:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 22:42:53] ANSI_COLOR="0;31"
[2025-07-27 22:42:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 22:42:53] HOME_URL="https://www.centos.org/"
[2025-07-27 22:42:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 22:42:53] 
[2025-07-27 22:42:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 22:42:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 22:42:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 22:42:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 22:42:53] 
[2025-07-27 22:42:53] 2025-07-28 02:42:21,868 | INFO     | ***************************************
[2025-07-27 22:42:53] 2025-07-28 02:42:22,372 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 22:42:53] 2025-07-28 02:42:22,389 | INFO     | sufficient remaining disk space (29428285440 B)
[2025-07-27 22:42:53] 2025-07-28 02:42:22,390 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 22:42:53] 2025-07-28 02:42:22,390 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 22:42:53] 2025-07-28 02:42:22,390 | INFO     | update_server=False
[2025-07-27 22:42:53] 2025-07-28 02:42:22,390 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 22:42:53] 2025-07-28 02:42:22,391 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 22:42:53] 2025-07-28 02:42:22,391 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 22:42:53] 2025-07-28 02:42:22,391 | INFO     | aborting loop
[2025-07-27 22:42:53] 2025-07-28 02:42:22,391 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 22:42:53] 2025-07-28 02:42:22,925 | INFO     | all job control threads have been joined
[2025-07-27 22:42:53] 2025-07-28 02:42:23,140 | INFO     | all payload control threads have been joined
[2025-07-27 22:42:53] 2025-07-28 02:42:23,348 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 22:42:53] 2025-07-28 02:42:23,395 | INFO     | [job] retrieve thread has finished
[2025-07-27 22:42:53] 2025-07-28 02:42:23,396 | INFO     | [job] queue monitor thread has finished
[2025-07-27 22:42:53] 2025-07-28 02:42:23,397 | INFO     | [job] job monitor thread has finished
[2025-07-27 22:42:53] 2025-07-28 02:42:23,411 | INFO     | all data control threads have been joined
[2025-07-27 22:42:53] 2025-07-28 02:42:23,415 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 22:42:53] 2025-07-28 02:42:23,417 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 22:42:53] 2025-07-28 02:42:23,524 | INFO     | [payload] validate_post thread has finished
[2025-07-27 22:42:53] 2025-07-28 02:42:23,930 | INFO     | [job] control thread has finished
[2025-07-27 22:42:53] 2025-07-28 02:42:24,096 | INFO     | [data] copytool_in thread has finished
[2025-07-27 22:42:53] 2025-07-28 02:42:24,146 | INFO     | [payload] control thread has finished
[2025-07-27 22:42:53] 2025-07-28 02:42:24,270 | INFO     | [payload] failed_post thread has finished
[2025-07-27 22:42:53] 2025-07-28 02:42:24,416 | INFO     | [data] control thread has finished
[2025-07-27 22:42:53] 2025-07-28 02:42:24,443 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 22:42:53] 2025-07-28 02:42:24,791 | INFO     | [job] validate thread has finished
[2025-07-27 22:42:53] 2025-07-28 02:42:25,349 | INFO     | [data] copytool_out thread has finished
[2025-07-27 22:42:53] 2025-07-28 02:42:26,397 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 22:42:53] 2025-07-28 02:42:33,346 | INFO     | job.realtimelogging is not enabled
[2025-07-27 22:42:53] 2025-07-28 02:42:34,352 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 22:42:53] 2025-07-28 02:42:36,366 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140214023264064)>', '<ExcThread(monitor, started 140213720422144)>']
[2025-07-27 22:42:53] 2025-07-28 02:42:41,391 | INFO     | all workflow threads have been joined
[2025-07-27 22:42:53] 2025-07-28 02:42:41,392 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 22:42:53] 2025-07-28 02:42:41,392 | INFO     | traces error code: 0
[2025-07-27 22:42:53] 2025-07-28 02:42:41,392 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 22:42:53] 2025-07-28 02:42:52,723 | INFO     | PID=6447 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-27 22:42:53] 2025-07-28 02:42:52,724 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 22:42:53] 2025-07-28 02:42:52,724 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 22:42:53] 2025-07-28 02:42:52,724 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 22:42:53] 2025-07-28 02:42:52,724 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 22:42:53] 2025-07-28 02:42:52,724 | INFO     | [monitor] control thread has ended
[2025-07-27 22:42:53] 2025-07-28 02:42:52,807 [wrapper] ==== pilot stdout END ====
[2025-07-27 22:42:53] 2025-07-28 02:42:52,811 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 22:42:53] 2025-07-28 02:42:52,815 [wrapper] pilotpid: 6447
[2025-07-27 22:42:53] 2025-07-28 02:42:52,819 [wrapper] Pilot exit status: 0
[2025-07-27 22:42:53] 2025-07-28 02:42:52,835 [wrapper] pandaids: 6747544553
[2025-07-27 22:42:53] 2025-07-28 02:42:52,875 [wrapper] cleanup supervisor_pilot 12096 6448
[2025-07-27 22:42:53] 2025-07-28 02:42:52,879 [wrapper] Test setup, not cleaning
[2025-07-27 22:42:53] 2025-07-28 02:42:52,882 [wrapper] apfmon messages muted
[2025-07-27 22:42:53] 2025-07-28 02:42:52,886 [wrapper] ==== wrapper stdout END ====
[2025-07-27 22:42:53] 2025-07-28 02:42:52,889 [wrapper] ==== wrapper stderr END ====
[2025-07-27 22:42:53]  *** Error codes and diagnostics ***
[2025-07-27 22:42:53]     "exeErrorCode": 0,
[2025-07-27 22:42:53]     "exeErrorDiag": "",
[2025-07-27 22:42:53]     "pilotErrorCode": 0,
[2025-07-27 22:42:53]     "pilotErrorDiag": "",
[2025-07-27 22:42:53]  *** Listing of results directory ***
[2025-07-27 22:42:53] total 369092
[2025-07-27 22:42:53] -rw-r--r-- 1 boincer umatlas    530466 Jul 27 12:02 pilot3.tar.gz
[2025-07-27 22:42:53] -rw-r--r-- 1 boincer umatlas      5112 Jul 27 12:41 queuedata.json
[2025-07-27 22:42:53] -rwx------ 1 boincer umatlas     36292 Jul 27 12:43 runpilot2-wrapper.sh
[2025-07-27 22:42:53] -rw-r--r-- 1 boincer umatlas       100 Jul 27 20:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 22:42:53] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 20:46 run_atlas
[2025-07-27 22:42:53] -rw-r--r-- 1 boincer umatlas       105 Jul 27 20:46 job.xml
[2025-07-27 22:42:53] -rw-r--r-- 2 boincer umatlas 217413105 Jul 27 20:46 EVNT.45758482._000002.pool.root.1
[2025-07-27 22:42:53] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 20:46 start_atlas.sh
[2025-07-27 22:42:53] drwxrwx--x 2 boincer umatlas      4096 Jul 27 20:46 shared
[2025-07-27 22:42:53] -rw-r--r-- 2 boincer umatlas    542874 Jul 27 20:46 input.tar.gz
[2025-07-27 22:42:53] -rw-r--r-- 1 boincer umatlas         0 Jul 27 20:46 boinc_lockfile
[2025-07-27 22:42:53] -rw-r--r-- 1 boincer umatlas      2559 Jul 27 20:46 pandaJob.out
[2025-07-27 22:42:53] -rw------- 1 boincer umatlas    980125 Jul 27 20:46 agis_schedconf.cvmfs.json
[2025-07-27 22:42:53] -rw------- 1 boincer umatlas   1593052 Jul 27 20:46 agis_ddmendpoints.agis.ALL.json
[2025-07-27 22:42:53] drwx------ 4 boincer umatlas      4096 Jul 27 20:46 pilot3
[2025-07-27 22:42:53] -rw-r--r-- 1 boincer umatlas      5867 Jul 27 22:40 init_data.xml
[2025-07-27 22:42:53] -rw------- 1 boincer umatlas 154630818 Jul 27 22:41 HITS.45758484._000029.pool.root.1
[2025-07-27 22:42:53] -rw-r--r-- 1 boincer umatlas       529 Jul 27 22:42 boinc_task_state.xml
[2025-07-27 22:42:53] -rw------- 1 boincer umatlas      1048 Jul 27 22:42 memory_monitor_summary.json
[2025-07-27 22:42:53] -rw------- 1 boincer umatlas    374843 Jul 27 22:42 log.45758484._000029.job.log.tgz.1
[2025-07-27 22:42:53] -rw------- 1 boincer umatlas      7840 Jul 27 22:42 heartbeat.json
[2025-07-27 22:42:53] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 22:42 boinc_mmap_file
[2025-07-27 22:42:53] -rw-r--r-- 1 boincer umatlas        27 Jul 27 22:42 wrapper_checkpoint.txt
[2025-07-27 22:42:53] -rw------- 1 boincer umatlas        95 Jul 27 22:42 pilot_heartbeat.json
[2025-07-27 22:42:53] -rw------- 1 boincer umatlas       744 Jul 27 22:42 pilotlog.txt
[2025-07-27 22:42:53] -rw------- 1 boincer umatlas    639105 Jul 27 22:42 log.45758484._000029.job.log.1
[2025-07-27 22:42:53] -rw------- 1 boincer umatlas       357 Jul 27 22:42 output.list
[2025-07-27 22:42:53] -rw-r--r-- 1 boincer umatlas       620 Jul 27 22:42 runtime_log
[2025-07-27 22:42:53] -rw------- 1 boincer umatlas   1034240 Jul 27 22:42 result.tar.gz
[2025-07-27 22:42:53] -rw------- 1 boincer umatlas       659 Jul 27 22:42 xthKDmbeJ07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmJrVLDmeqodMm.diag
[2025-07-27 22:42:53] -rw-r--r-- 1 boincer umatlas      8657 Jul 27 22:42 runtime_log.err
[2025-07-27 22:42:53] -rw-r--r-- 1 boincer umatlas     21559 Jul 27 22:42 stderr.txt
[2025-07-27 22:42:53] HITS file was successfully produced:
[2025-07-27 22:42:53] -rw------- 1 boincer umatlas 154630818 Jul 27 22:41 shared/HITS.pool.root.1
[2025-07-27 22:42:53]  *** Contents of shared directory: ***
[2025-07-27 22:42:53] total 364892
[2025-07-27 22:42:53] -rw-r--r-- 2 boincer umatlas 217413105 Jul 27 20:46 ATLAS.root_0
[2025-07-27 22:42:53] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 20:46 start_atlas.sh
[2025-07-27 22:42:53] -rw-r--r-- 2 boincer umatlas    542874 Jul 27 20:46 input.tar.gz
[2025-07-27 22:42:53] -rw------- 1 boincer umatlas 154630818 Jul 27 22:41 HITS.pool.root.1
[2025-07-27 22:42:53] -rw------- 1 boincer umatlas   1034240 Jul 27 22:42 result.tar.gz
22:42:54 (2808): run_atlas exited; CPU time 76552.968957
22:42:54 (2808): called boinc_finish(0)

</stderr_txt>
]]>

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