Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:01:15 (914008): wrapper (7.7.26015): starting
16:01:15 (914008): wrapper: running run_atlas (--nthreads 6)
[2025-07-28 16:01:15] Arguments: --nthreads 6
[2025-07-28 16:01:15] Threads: 6
[2025-07-28 16:01:15] Checking for CVMFS
[2025-07-28 16:01:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 16:01:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 16:01:15] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 16:01:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 16:01:15] 2.11.5.0 2646 1466 72120 148839 2 62 29565344 52428800 929 130560 0 2506016 99.996 48887 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-07-28 16:01:15] CVMFS is ok
[2025-07-28 16:01:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 16:01:15] Checking for apptainer binary...
[2025-07-28 16:01:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 16:01:15] Running /usr/bin/apptainer --version
[2025-07-28 16:01:15] apptainer version 1.3.6-1.el9
[2025-07-28 16:01:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 16:01:16] testio002
[2025-07-28 16:01:16] apptainer works
[2025-07-28 16:01:16] Set ATHENA_PROC_NUMBER=6
[2025-07-28 16:01:16] Set ATHENA_CORE_NUMBER=6
[2025-07-28 16:01:16] Starting ATLAS job with PandaID=6747626232
[2025-07-28 16:01:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 17:19:39]  *** The last 200 lines of the pilot log: ***
[2025-07-28 17:19:39] 2025-07-28 08:18:31,654 | INFO     | monitor loop #355: job 0:6747626232 is in state 'finished'
[2025-07-28 17:19:39] 2025-07-28 08:18:31,654 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:19:39] 2025-07-28 08:18:33,464 | INFO     | PID=917732 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 17:19:39] 2025-07-28 08:18:33,464 | INFO     | .. there are 2 such processes running
[2025-07-28 17:19:39] 2025-07-28 08:18:34,157 | INFO     | monitor loop #356: job 0:6747626232 is in state 'finished'
[2025-07-28 17:19:39] 2025-07-28 08:18:34,157 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:19:39] 2025-07-28 08:18:36,659 | INFO     | monitor loop #357: job 0:6747626232 is in state 'finished'
[2025-07-28 17:19:39] 2025-07-28 08:18:36,659 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:19:39] 2025-07-28 08:18:39,161 | INFO     | monitor loop #358: job 0:6747626232 is in state 'finished'
[2025-07-28 17:19:39] 2025-07-28 08:18:39,161 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:19:39] 2025-07-28 08:18:41,664 | INFO     | monitor loop #359: job 0:6747626232 is in state 'finished'
[2025-07-28 17:19:39] 2025-07-28 08:18:41,664 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:19:39] 2025-07-28 08:18:44,167 | INFO     | monitor loop #360: job 0:6747626232 is in state 'finished'
[2025-07-28 17:19:39] 2025-07-28 08:18:44,167 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:19:39] 2025-07-28 08:18:46,670 | INFO     | monitor loop #361: job 0:6747626232 is in state 'finished'
[2025-07-28 17:19:39] 2025-07-28 08:18:46,670 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:19:39] 2025-07-28 08:18:49,173 | INFO     | monitor loop #362: job 0:6747626232 is in state 'finished'
[2025-07-28 17:19:39] 2025-07-28 08:18:49,173 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:19:39] 2025-07-28 08:18:51,676 | INFO     | monitor loop #363: job 0:6747626232 is in state 'finished'
[2025-07-28 17:19:39] 2025-07-28 08:18:51,676 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:19:39] 2025-07-28 08:18:54,179 | INFO     | monitor loop #364: job 0:6747626232 is in state 'finished'
[2025-07-28 17:19:39] 2025-07-28 08:18:54,179 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:19:39] 2025-07-28 08:18:55,576 | INFO     | PID=917732 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 17:19:39] 2025-07-28 08:18:55,576 | INFO     | .. there are 2 such processes running
[2025-07-28 17:19:39] 2025-07-28 08:18:56,682 | INFO     | monitor loop #365: job 0:6747626232 is in state 'finished'
[2025-07-28 17:19:39] 2025-07-28 08:18:56,682 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:19:39] 2025-07-28 08:18:59,185 | INFO     | monitor loop #366: job 0:6747626232 is in state 'finished'
[2025-07-28 17:19:39] 2025-07-28 08:18:59,185 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:19:39] 2025-07-28 08:19:01,687 | INFO     | monitor loop #367: job 0:6747626232 is in state 'finished'
[2025-07-28 17:19:39] 2025-07-28 08:19:01,687 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:19:39] 2025-07-28 08:19:04,190 | INFO     | monitor loop #368: job 0:6747626232 is in state 'finished'
[2025-07-28 17:19:39] 2025-07-28 08:19:04,190 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:19:39] 2025-07-28 08:19:06,693 | INFO     | monitor loop #369: job 0:6747626232 is in state 'finished'
[2025-07-28 17:19:39] 2025-07-28 08:19:06,693 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:19:39] 2025-07-28 08:19:07,161 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-28 17:19:39] 2025-07-28 08:19:07,163 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 4399.9035625
[2025-07-28 17:19:39] 2025-07-28 08:19:07,164 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6747626232/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 17:19:39] 2025-07-28 08:19:07,165 | INFO     | extracted standard info from prmon json
[2025-07-28 17:19:39] 2025-07-28 08:19:07,165 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 17:19:39] 2025-07-28 08:19:07,165 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 17:19:39] 2025-07-28 08:19:07,165 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 17:19:39] 2025-07-28 08:19:07,165 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 17:19:39] 2025-07-28 08:19:07,166 | INFO     | fitting pss+swap vs Time
[2025-07-28 17:19:39] 2025-07-28 08:19:07,166 | INFO     | sum of square deviations: 97479037.0
[2025-07-28 17:19:39] 2025-07-28 08:19:07,166 | INFO     | sum of deviations: 13256783001.500002
[2025-07-28 17:19:39] 2025-07-28 08:19:07,166 | INFO     | mean x: 1753688468.5
[2025-07-28 17:19:39] 2025-07-28 08:19:07,166 | INFO     | mean y: 2406780.044117647
[2025-07-28 17:19:39] 2025-07-28 08:19:07,166 | INFO     | -- intersect: -238492639894.83603
[2025-07-28 17:19:39] 2025-07-28 08:19:07,166 | INFO     | intersect: -238492639894.83603
[2025-07-28 17:19:39] 2025-07-28 08:19:07,166 | INFO     | chi2: 1.6371671982416807
[2025-07-28 17:19:39] 2025-07-28 08:19:07,166 | INFO     | -- intersect: -238492639894.83603
[2025-07-28 17:19:39] 2025-07-28 08:19:07,166 | INFO     | current memory leak: 136.00 B/s (using 68 data points, chi2=1.64)
[2025-07-28 17:19:39] 2025-07-28 08:19:07,166 | INFO     | could have reported an average CPU frequency of 4382 MHz (6 samples)
[2025-07-28 17:19:39] 2025-07-28 08:19:07,166 | INFO     | ..............................
[2025-07-28 17:19:39] 2025-07-28 08:19:07,166 | INFO     | . Timing measurements:
[2025-07-28 17:19:39] 2025-07-28 08:19:07,166 | INFO     | . get job = 0 s
[2025-07-28 17:19:39] 2025-07-28 08:19:07,166 | INFO     | . initial setup = 24 s
[2025-07-28 17:19:39] 2025-07-28 08:19:07,166 | INFO     | . payload setup = 2 s
[2025-07-28 17:19:39] 2025-07-28 08:19:07,166 | INFO     | . stage-in = 0 s
[2025-07-28 17:19:39] 2025-07-28 08:19:07,167 | INFO     | . payload execution = 4546 s
[2025-07-28 17:19:39] 2025-07-28 08:19:07,167 | INFO     | . stage-out = 0 s
[2025-07-28 17:19:39] 2025-07-28 08:19:07,167 | INFO     | . log creation = 0 s
[2025-07-28 17:19:39] 2025-07-28 08:19:07,167 | INFO     | ..............................
[2025-07-28 17:19:39] 2025-07-28 08:19:07,195 | INFO     | 
[2025-07-28 17:19:39] 2025-07-28 08:19:07,195 | INFO     | job summary report
[2025-07-28 17:19:39] 2025-07-28 08:19:07,195 | INFO     | --------------------------------------------------
[2025-07-28 17:19:39] 2025-07-28 08:19:07,195 | INFO     | PanDA job id: 6747626232
[2025-07-28 17:19:39] 2025-07-28 08:19:07,195 | INFO     | task id: 45743349
[2025-07-28 17:19:39] 2025-07-28 08:19:07,195 | INFO     | errors: (none)
[2025-07-28 17:19:39] 2025-07-28 08:19:07,196 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 17:19:39] 2025-07-28 08:19:07,196 | INFO     | pilot state: finished 
[2025-07-28 17:19:39] 2025-07-28 08:19:07,196 | INFO     | transexitcode: 0
[2025-07-28 17:19:39] 2025-07-28 08:19:07,196 | INFO     | exeerrorcode: 0
[2025-07-28 17:19:39] 2025-07-28 08:19:07,196 | INFO     | exeerrordiag: 
[2025-07-28 17:19:39] 2025-07-28 08:19:07,196 | INFO     | exitcode: 0
[2025-07-28 17:19:39] 2025-07-28 08:19:07,196 | INFO     | exitmsg: OK
[2025-07-28 17:19:39] 2025-07-28 08:19:07,196 | INFO     | cpuconsumptiontime: 22995 s
[2025-07-28 17:19:39] 2025-07-28 08:19:07,196 | INFO     | nevents: 400
[2025-07-28 17:19:39] 2025-07-28 08:19:07,196 | INFO     | neventsw: 0
[2025-07-28 17:19:39] 2025-07-28 08:19:07,196 | INFO     | pid: 924296
[2025-07-28 17:19:39] 2025-07-28 08:19:07,196 | INFO     | pgrp: 924296
[2025-07-28 17:19:39] 2025-07-28 08:19:07,196 | INFO     | corecount: 6
[2025-07-28 17:19:39] 2025-07-28 08:19:07,196 | INFO     | event service: False
[2025-07-28 17:19:39] 2025-07-28 08:19:07,196 | INFO     | sizes: {0: 2397304, 1: 2397503, 2: 2397765, 11: 2397793, 4552: 2424005, 4553: 2433003, 4555: 2433215, 4631: 2433409}
[2025-07-28 17:19:39] 2025-07-28 08:19:07,196 | INFO     | --------------------------------------------------
[2025-07-28 17:19:39] 2025-07-28 08:19:07,196 | INFO     | 
[2025-07-28 17:19:39] 2025-07-28 08:19:07,196 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-07-28 17:19:39] 2025-07-28 08:19:07,203 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 17:19:39] 2025-07-28 08:19:07,203 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 17:19:39] 2025-07-28 08:19:07,203 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 17:19:39] 2025-07-28 08:19:07,203 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 17:19:39] 2025-07-28 08:19:07,203 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 17:19:39] 2025-07-28 08:19:07,203 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 17:19:39] 2025-07-28 08:19:07,203 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 17:19:39] 2025-07-28 08:19:07,203 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 17:19:39] 2025-07-28 08:19:07,204 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 17:19:39] 2025-07-28 08:19:07,204 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 17:19:39] 2025-07-28 08:19:07,204 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 17:19:39] 2025-07-28 08:19:07,204 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 17:19:39] 2025-07-28 08:19:07,204 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 17:19:39] 2025-07-28 08:19:07,204 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 17:19:39] 2025-07-28 08:19:07,204 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 17:19:39] 2025-07-28 08:19:07,204 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 17:19:39] 2025-07-28 08:19:07,204 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 17:19:39] 2025-07-28 08:19:07,204 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 17:19:39] 2025-07-28 08:19:07,204 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 17:19:39] 2025-07-28 08:19:07,204 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 17:19:39] 2025-07-28 08:19:07,204 | INFO     | job 6747626232 has completed (purged errors)
[2025-07-28 17:19:39] 2025-07-28 08:19:07,204 | INFO     | overall cleanup function is called
[2025-07-28 17:19:39] 2025-07-28 08:19:08,210 | INFO     | --- collectZombieJob: --- 10, [924296]
[2025-07-28 17:19:39] 2025-07-28 08:19:08,210 | INFO     | zombie collector waiting for pid 924296
[2025-07-28 17:19:39] 2025-07-28 08:19:08,210 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 17:19:39] 2025-07-28 08:19:08,210 | INFO     | collected zombie processes
[2025-07-28 17:19:39] 2025-07-28 08:19:08,210 | INFO     | will attempt to kill all subprocesses of pid=924296
[2025-07-28 17:19:39] 2025-07-28 08:19:08,257 | INFO     | process IDs to be killed: [924296] (in reverse order)
[2025-07-28 17:19:39] 2025-07-28 08:19:08,277 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 17:19:39] 2025-07-28 08:19:08,277 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 17:19:39] 2025-07-28 08:19:08,279 | INFO     | did not find any defunct processes belonging to 924296
[2025-07-28 17:19:39] 2025-07-28 08:19:08,280 | INFO     | did not find any defunct processes belonging to 924296
[2025-07-28 17:19:39] 2025-07-28 08:19:08,280 | INFO     | ready for new job
[2025-07-28 17:19:39] 2025-07-28 08:19:08,280 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 17:19:39] 2025-07-28 08:19:08,281 | INFO     | ***************************************
[2025-07-28 17:19:39] 2025-07-28 08:19:08,281 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 17:19:39] 2025-07-28 08:19:08,281 | INFO     | ***************************************
[2025-07-28 17:19:39] 2025-07-28 08:19:08,281 | INFO     | 
[2025-07-28 17:19:39] 2025-07-28 08:19:08,282 | INFO     | architecture information:
[2025-07-28 17:19:39] 2025-07-28 08:19:08,282 | INFO     | executing command: cat /etc/os-release
[2025-07-28 17:19:39] 2025-07-28 08:19:08,288 | INFO     | cat /etc/os-release:
[2025-07-28 17:19:39] NAME="CentOS Linux"
[2025-07-28 17:19:39] VERSION="7 (Core)"
[2025-07-28 17:19:39] ID="centos"
[2025-07-28 17:19:39] ID_LIKE="rhel fedora"
[2025-07-28 17:19:39] VERSION_ID="7"
[2025-07-28 17:19:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 17:19:39] ANSI_COLOR="0;31"
[2025-07-28 17:19:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 17:19:39] HOME_URL="https://www.centos.org/"
[2025-07-28 17:19:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 17:19:39] 
[2025-07-28 17:19:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 17:19:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 17:19:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 17:19:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 17:19:39] 
[2025-07-28 17:19:39] 2025-07-28 08:19:08,288 | INFO     | ***************************************
[2025-07-28 17:19:39] 2025-07-28 08:19:08,790 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-07-28 17:19:39] 2025-07-28 08:19:08,797 | INFO     | sufficient remaining disk space (316125741056 B)
[2025-07-28 17:19:39] 2025-07-28 08:19:08,797 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 17:19:39] 2025-07-28 08:19:08,797 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 17:19:39] 2025-07-28 08:19:08,797 | INFO     | update_server=False
[2025-07-28 17:19:39] 2025-07-28 08:19:08,797 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 17:19:39] 2025-07-28 08:19:08,797 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 17:19:39] 2025-07-28 08:19:08,906 | INFO     | all data control threads have been joined
[2025-07-28 17:19:39] 2025-07-28 08:19:08,911 | INFO     | all job control threads have been joined
[2025-07-28 17:19:39] 2025-07-28 08:19:09,026 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 17:19:39] 2025-07-28 08:19:09,196 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-28 17:19:39] 2025-07-28 08:19:09,196 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-28 17:19:39] 2025-07-28 08:19:09,196 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 17:19:39] 2025-07-28 08:19:09,196 | INFO     | will abort loop
[2025-07-28 17:19:39] 2025-07-28 08:19:09,364 | INFO     | all payload control threads have been joined
[2025-07-28 17:19:39] 2025-07-28 08:19:09,565 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 17:19:39] 2025-07-28 08:19:09,802 | INFO     | [job] retrieve thread has finished
[2025-07-28 17:19:39] 2025-07-28 08:19:09,802 | INFO     | [job] queue monitor thread has finished
[2025-07-28 17:19:39] 2025-07-28 08:19:09,911 | INFO     | [data] control thread has finished
[2025-07-28 17:19:39] 2025-07-28 08:19:09,917 | INFO     | [job] control thread has finished
[2025-07-28 17:19:39] 2025-07-28 08:19:10,168 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 17:19:39] 2025-07-28 08:19:10,201 | INFO     | [job] job monitor thread has finished
[2025-07-28 17:19:39] 2025-07-28 08:19:10,369 | INFO     | [payload] control thread has finished
[2025-07-28 17:19:39] 2025-07-28 08:19:10,752 | INFO     | [job] validate thread has finished
[2025-07-28 17:19:39] 2025-07-28 08:19:10,836 | INFO     | [payload] validate_post thread has finished
[2025-07-28 17:19:39] 2025-07-28 08:19:10,967 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 17:19:39] 2025-07-28 08:19:11,064 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 17:19:39] 2025-07-28 08:19:11,264 | INFO     | [data] copytool_in thread has finished
[2025-07-28 17:19:39] 2025-07-28 08:19:11,265 | INFO     | [payload] failed_post thread has finished
[2025-07-28 17:19:39] 2025-07-28 08:19:11,570 | INFO     | [data] copytool_out thread has finished
[2025-07-28 17:19:39] 2025-07-28 08:19:13,031 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 17:19:39] 2025-07-28 08:19:19,554 | INFO     | job.realtimelogging is not enabled
[2025-07-28 17:19:39] 2025-07-28 08:19:20,559 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 17:19:39] 2025-07-28 08:19:21,571 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139791487268672)>', '<ExcThread(monitor, started 139791135905536)>']
[2025-07-28 17:19:39] 2025-07-28 08:19:26,596 | INFO     | all workflow threads have been joined
[2025-07-28 17:19:39] 2025-07-28 08:19:26,596 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 17:19:39] 2025-07-28 08:19:26,596 | INFO     | traces error code: 0
[2025-07-28 17:19:39] 2025-07-28 08:19:26,596 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 17:19:39] 2025-07-28 08:19:39,717 | INFO     | PID=917732 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 17:19:39] 2025-07-28 08:19:39,717 | INFO     | .. there are 2 such processes running
[2025-07-28 17:19:39] 2025-07-28 08:19:39,717 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 17:19:39] 2025-07-28 08:19:39,717 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 17:19:39] 2025-07-28 08:19:39,717 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 17:19:39] 2025-07-28 08:19:39,717 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 17:19:39] 2025-07-28 08:19:39,717 | INFO     | [monitor] control thread has ended
[2025-07-28 17:19:39] 2025-07-28 08:19:39,779 [wrapper] ==== pilot stdout END ====
[2025-07-28 17:19:39] 2025-07-28 08:19:39,780 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 17:19:39] 2025-07-28 08:19:39,781 [wrapper] pilotpid: 917732
[2025-07-28 17:19:39] 2025-07-28 08:19:39,782 [wrapper] Pilot exit status: 0
[2025-07-28 17:19:39] 2025-07-28 08:19:39,786 [wrapper] pandaids: 6747626232
[2025-07-28 17:19:39] 2025-07-28 08:19:39,798 [wrapper] cleanup supervisor_pilot  959848 917733
[2025-07-28 17:19:39] 2025-07-28 08:19:39,799 [wrapper] Test setup, not cleaning
[2025-07-28 17:19:39] 2025-07-28 08:19:39,800 [wrapper] apfmon messages muted
[2025-07-28 17:19:39] 2025-07-28 08:19:39,801 [wrapper] ==== wrapper stdout END ====
[2025-07-28 17:19:39] 2025-07-28 08:19:39,802 [wrapper] ==== wrapper stderr END ====
[2025-07-28 17:19:39]  *** Error codes and diagnostics ***
[2025-07-28 17:19:39]     "exeErrorCode": 0,
[2025-07-28 17:19:39]     "exeErrorDiag": "",
[2025-07-28 17:19:39]     "pilotErrorCode": 0,
[2025-07-28 17:19:39]     "pilotErrorDiag": "",
[2025-07-28 17:19:39]  *** Listing of results directory ***
[2025-07-28 17:19:39] total 441720
[2025-07-28 17:19:39] -rwx------. 1 boinc boinc     36292 Jul 28 04:12 runpilot2-wrapper.sh
[2025-07-28 17:19:39] -rw-r--r--. 1 boinc boinc      5112 Jul 28 04:12 queuedata.json
[2025-07-28 17:19:39] -rw-r--r--. 1 boinc boinc    530466 Jul 28 04:12 pilot3.tar.gz
[2025-07-28 17:19:39] -rw-r--r--. 1 boinc boinc       100 Jul 28 16:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 17:19:39] -rwxr-xr-x. 1 boinc boinc      7986 Jul 28 16:01 run_atlas
[2025-07-28 17:19:39] -rw-r--r--. 1 boinc boinc       105 Jul 28 16:01 job.xml
[2025-07-28 17:19:39] -rw-r--r--. 2 boinc boinc     15095 Jul 28 16:01 start_atlas.sh
[2025-07-28 17:19:39] drwxrwx--x. 2 boinc boinc        68 Jul 28 16:01 shared
[2025-07-28 17:19:39] -rw-r--r--. 2 boinc boinc    542893 Jul 28 16:01 input.tar.gz
[2025-07-28 17:19:39] -rw-r--r--. 1 boinc boinc      9627 Jul 28 16:01 init_data.xml
[2025-07-28 17:19:39] -rw-r--r--. 2 boinc boinc 233704170 Jul 28 16:01 EVNT.45743347._002944.pool.root.1
[2025-07-28 17:19:39] -rw-r--r--. 1 boinc boinc         0 Jul 28 16:01 boinc_lockfile
[2025-07-28 17:19:39] -rw-r--r--. 1 boinc boinc      2563 Jul 28 16:01 pandaJob.out
[2025-07-28 17:19:39] -rw-------. 1 boinc boinc    978460 Jul 28 16:01 agis_schedconf.cvmfs.json
[2025-07-28 17:19:39] -rw-------. 1 boinc boinc   1593052 Jul 28 16:01 agis_ddmendpoints.agis.ALL.json
[2025-07-28 17:19:39] drwx------. 4 boinc boinc      4096 Jul 28 16:01 pilot3
[2025-07-28 17:19:39] -rw-------. 1 boinc boinc 213276692 Jul 28 17:17 HITS.45743349._054334.pool.root.1
[2025-07-28 17:19:39] -rw-r--r--. 1 boinc boinc       529 Jul 28 17:17 boinc_task_state.xml
[2025-07-28 17:19:39] -rw-------. 1 boinc boinc      1024 Jul 28 17:17 memory_monitor_summary.json
[2025-07-28 17:19:39] -rw-------. 1 boinc boinc    277216 Jul 28 17:17 log.45743349._054334.job.log.tgz.1
[2025-07-28 17:19:39] -rw-------. 1 boinc boinc        95 Jul 28 17:18 pilot_heartbeat.json
[2025-07-28 17:19:39] -rw-------. 1 boinc boinc      7794 Jul 28 17:19 heartbeat.json
[2025-07-28 17:19:39] -rw-r--r--. 1 boinc boinc      8192 Jul 28 17:19 boinc_mmap_file
[2025-07-28 17:19:39] -rw-r--r--. 1 boinc boinc        27 Jul 28 17:19 wrapper_checkpoint.txt
[2025-07-28 17:19:39] -rw-------. 1 boinc boinc       821 Jul 28 17:19 pilotlog.txt
[2025-07-28 17:19:39] -rw-------. 1 boinc boinc    463013 Jul 28 17:19 log.45743349._054334.job.log.1
[2025-07-28 17:19:39] -rw-------. 1 boinc boinc       357 Jul 28 17:19 output.list
[2025-07-28 17:19:39] -rw-r--r--. 1 boinc boinc       620 Jul 28 17:19 runtime_log
[2025-07-28 17:19:39] -rw-------. 1 boinc boinc    757760 Jul 28 17:19 result.tar.gz
[2025-07-28 17:19:39] -rw-r--r--. 1 boinc boinc      8618 Jul 28 17:19 runtime_log.err
[2025-07-28 17:19:39] -rw-------. 1 boinc boinc       642 Jul 28 17:19 GGlKDmqyL07n9Rq4apOajLDm4fhM0noT9bVof3QYDmfz2KDmOii2So.diag
[2025-07-28 17:19:39] -rw-r--r--. 1 boinc boinc     22116 Jul 28 17:19 stderr.txt
[2025-07-28 17:19:39] HITS file was successfully produced:
[2025-07-28 17:19:39] -rw-------. 1 boinc boinc 213276692 Jul 28 17:17 shared/HITS.pool.root.1
[2025-07-28 17:19:39]  *** Contents of shared directory: ***
[2025-07-28 17:19:39] total 437796
[2025-07-28 17:19:39] -rw-r--r--. 2 boinc boinc     15095 Jul 28 16:01 start_atlas.sh
[2025-07-28 17:19:39] -rw-r--r--. 2 boinc boinc    542893 Jul 28 16:01 input.tar.gz
[2025-07-28 17:19:39] -rw-r--r--. 2 boinc boinc 233704170 Jul 28 16:01 ATLAS.root_0
[2025-07-28 17:19:39] -rw-------. 1 boinc boinc 213276692 Jul 28 17:17 HITS.pool.root.1
[2025-07-28 17:19:39] -rw-------. 1 boinc boinc    757760 Jul 28 17:19 result.tar.gz
17:19:41 (914008): run_atlas exited; CPU time 23020.339420
17:19:41 (914008): called boinc_finish(0)

</stderr_txt>
]]>

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