Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:36:58 (462213): wrapper (7.7.26015): starting
21:36:58 (462213): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 21:36:58] Arguments: --nthreads 12
[2025-07-27 21:36:58] Threads: 12
[2025-07-27 21:36:58] Checking for CVMFS
[2025-07-27 21:36:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 21:36:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 21:36:59] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 21:36:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 21:36:59] 2.12.6.0 2624825 19153 338192 148830 0 318 36842882 40960001 9511 16776704 0 58780185 99.779 53657860 31189 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 21:36:59] CVMFS is ok
[2025-07-27 21:36:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 21:36:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 21:36:59] Further information can be found at the LHC@home message board.
[2025-07-27 21:36:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 21:36:59] Checking for apptainer binary...
[2025-07-27 21:36:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 21:36:59] Running /usr/bin/apptainer --version
[2025-07-27 21:36:59] apptainer version 1.4.1-1.el9
[2025-07-27 21:36:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 21:36:59] c6-8-12-1.aglt2.org
[2025-07-27 21:36:59] apptainer works
[2025-07-27 21:36:59] Set ATHENA_PROC_NUMBER=12
[2025-07-27 21:36:59] Set ATHENA_CORE_NUMBER=12
[2025-07-27 21:36:59] Starting ATLAS job with PandaID=6747626377
[2025-07-27 21:36:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 22:51:38]  *** The last 200 lines of the pilot log: ***
[2025-07-27 22:51:38]  protocol_id=None
[2025-07-27 22:51:38]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 22:51:38]  replicas=None
[2025-07-27 22:51:38]  scope=mc23_13p6TeV
[2025-07-27 22:51:38]  status=None
[2025-07-27 22:51:38]  status_code=0
[2025-07-27 22:51:38]  storage_token=
[2025-07-27 22:51:38]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747626377/log.45743349._054479.job.log.tgz.1
[2025-07-27 22:51:38]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/33/ee/log.45743349._054479.job.log.tgz.1
[2025-07-27 22:51:38]  workdir=None
[2025-07-27 22:51:38] ]
[2025-07-27 22:51:38] 2025-07-28 02:50:59,443 | INFO     | transferring file log.45743349._054479.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747626377/log.45743349._054479.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 22:51:38] 2025-07-28 02:50:59,443 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747626377/log.45743349._054479.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._054479.job
[2025-07-27 22:51:38] 2025-07-28 02:50:59,461 | INFO     | adding to output.list: log.45743349._054479.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/33/ee/log.45743349._054479.job.log.tg
[2025-07-27 22:51:38] 2025-07-28 02:50:59,463 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 22:51:38] 2025-07-28 02:50:59,463 | INFO     | summary of transferred files:
[2025-07-27 22:51:38] 2025-07-28 02:50:59,463 | INFO     |  -- lfn=log.45743349._054479.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 22:51:38] 2025-07-28 02:50:59,463 | INFO     | stage-out finished correctly
[2025-07-27 22:51:38] 2025-07-28 02:51:00,027 | WARNING  | process 472804 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 22:51:38] 2025-07-28 02:51:00,027 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747626377/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 22:51:38] 2025-07-28 02:51:00,194 | INFO     | number of running child processes to parent process 472804: 1
[2025-07-27 22:51:38] 2025-07-28 02:51:00,194 | INFO     | maximum number of monitored processes: 6
[2025-07-27 22:51:38] 2025-07-28 02:51:01,065 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 22:51:38] 2025-07-28 02:51:01,142 | INFO     | job 6747626377 has state=finished
[2025-07-27 22:51:38] 2025-07-28 02:51:01,143 | INFO     | preparing for final server update for job 6747626377 in state='finished'
[2025-07-27 22:51:38] 2025-07-28 02:51:01,143 | INFO     | this job has now completed (state=finished)
[2025-07-27 22:51:38] 2025-07-28 02:51:01,143 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 22:51:38] 2025-07-28 02:51:01,143 | INFO     | log transfer has been attempted: DONE
[2025-07-27 22:51:38] 2025-07-28 02:51:01,143 | INFO     | job 6747626377 has finished - writing final server update
[2025-07-27 22:51:38] 2025-07-28 02:51:01,143 | INFO     | total number of processed events: 400 (read)
[2025-07-27 22:51:38] 2025-07-28 02:51:01,144 | INFO     | executing command: lscpu
[2025-07-27 22:51:38] 2025-07-28 02:51:01,190 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 22:51:38] 2025-07-28 02:51:01,489 | INFO     | PID=465816 has CPU usage=10.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 22:51:38] 2025-07-28 02:51:01,489 | INFO     | .. there are 10 such processes running
[2025-07-27 22:51:38] 2025-07-28 02:51:02,697 | INFO     | monitor loop #328: job 0:6747626377 is in state 'finished'
[2025-07-27 22:51:38] 2025-07-28 02:51:02,698 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 22:51:38] 2025-07-28 02:51:04,600 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 22:51:38] 2025-07-28 02:51:04,607 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3078.265964285714
[2025-07-27 22:51:38] 2025-07-28 02:51:04,638 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747626377/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 22:51:38] 2025-07-28 02:51:04,639 | INFO     | extracted standard info from prmon json
[2025-07-27 22:51:38] 2025-07-28 02:51:04,639 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 22:51:38] 2025-07-28 02:51:04,639 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 22:51:38] 2025-07-28 02:51:04,639 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 22:51:38] 2025-07-28 02:51:04,639 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 22:51:38] 2025-07-28 02:51:04,640 | INFO     | fitting pss+swap vs Time
[2025-07-27 22:51:38] 2025-07-28 02:51:04,641 | INFO     | sum of square deviations: 89127252.5
[2025-07-27 22:51:38] 2025-07-28 02:51:04,641 | INFO     | sum of deviations: -10018208394.499998
[2025-07-27 22:51:38] 2025-07-28 02:51:04,641 | INFO     | mean x: 1753668944.5
[2025-07-27 22:51:38] 2025-07-28 02:51:04,641 | INFO     | mean y: 2515203.196969697
[2025-07-27 22:51:38] 2025-07-28 02:51:04,641 | INFO     | -- intersect: 197120909949.6731
[2025-07-27 22:51:38] 2025-07-28 02:51:04,641 | INFO     | intersect: 197120909949.6731
[2025-07-27 22:51:38] 2025-07-28 02:51:04,641 | INFO     | chi2: 0.12856902666742068
[2025-07-27 22:51:38] 2025-07-28 02:51:04,641 | INFO     | -- intersect: 197120909949.6731
[2025-07-27 22:51:38] 2025-07-28 02:51:04,641 | INFO     | current memory leak: -112.40 B/s (using 66 data points, chi2=0.13)
[2025-07-27 22:51:38] 2025-07-28 02:51:04,641 | INFO     | could have reported an average CPU frequency of 2875 MHz (6 samples)
[2025-07-27 22:51:38] 2025-07-28 02:51:04,642 | INFO     | ..............................
[2025-07-27 22:51:38] 2025-07-28 02:51:04,642 | INFO     | . Timing measurements:
[2025-07-27 22:51:38] 2025-07-28 02:51:04,642 | INFO     | . get job = 0 s
[2025-07-27 22:51:38] 2025-07-28 02:51:04,642 | INFO     | . initial setup = 2 s
[2025-07-27 22:51:38] 2025-07-28 02:51:04,642 | INFO     | . payload setup = 6 s
[2025-07-27 22:51:38] 2025-07-28 02:51:04,642 | INFO     | . stage-in = 0 s
[2025-07-27 22:51:38] 2025-07-28 02:51:04,642 | INFO     | . payload execution = 4402 s
[2025-07-27 22:51:38] 2025-07-28 02:51:04,642 | INFO     | . stage-out = 0 s
[2025-07-27 22:51:38] 2025-07-28 02:51:04,642 | INFO     | . log creation = 0 s
[2025-07-27 22:51:38] 2025-07-28 02:51:04,642 | INFO     | ..............................
[2025-07-27 22:51:38] 2025-07-28 02:51:04,999 | INFO     | 
[2025-07-27 22:51:38] 2025-07-28 02:51:05,000 | INFO     | job summary report
[2025-07-27 22:51:38] 2025-07-28 02:51:05,000 | INFO     | --------------------------------------------------
[2025-07-27 22:51:38] 2025-07-28 02:51:05,000 | INFO     | PanDA job id: 6747626377
[2025-07-27 22:51:38] 2025-07-28 02:51:05,000 | INFO     | task id: 45743349
[2025-07-27 22:51:38] 2025-07-28 02:51:05,000 | INFO     | errors: (none)
[2025-07-27 22:51:38] 2025-07-28 02:51:05,000 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 22:51:38] 2025-07-28 02:51:05,000 | INFO     | pilot state: finished 
[2025-07-27 22:51:38] 2025-07-28 02:51:05,000 | INFO     | transexitcode: 0
[2025-07-27 22:51:38] 2025-07-28 02:51:05,000 | INFO     | exeerrorcode: 0
[2025-07-27 22:51:38] 2025-07-28 02:51:05,000 | INFO     | exeerrordiag: 
[2025-07-27 22:51:38] 2025-07-28 02:51:05,000 | INFO     | exitcode: 0
[2025-07-27 22:51:38] 2025-07-28 02:51:05,000 | INFO     | exitmsg: OK
[2025-07-27 22:51:38] 2025-07-28 02:51:05,000 | INFO     | cpuconsumptiontime: 47039 s
[2025-07-27 22:51:38] 2025-07-28 02:51:05,000 | INFO     | nevents: 400
[2025-07-27 22:51:38] 2025-07-28 02:51:05,000 | INFO     | neventsw: 0
[2025-07-27 22:51:38] 2025-07-28 02:51:05,000 | INFO     | pid: 472804
[2025-07-27 22:51:38] 2025-07-28 02:51:05,000 | INFO     | pgrp: 472804
[2025-07-27 22:51:38] 2025-07-28 02:51:05,000 | INFO     | corecount: 12
[2025-07-27 22:51:38] 2025-07-28 02:51:05,000 | INFO     | event service: False
[2025-07-27 22:51:38] 2025-07-28 02:51:05,000 | INFO     | sizes: {0: 2397304, 1: 2397503, 5: 2397765, 11: 2397821, 4412: 2423984, 4413: 2423983, 4414: 2433165, 4415: 2433221, 4419: 2433415}
[2025-07-27 22:51:38] 2025-07-28 02:51:05,001 | INFO     | --------------------------------------------------
[2025-07-27 22:51:38] 2025-07-28 02:51:05,001 | INFO     | 
[2025-07-27 22:51:38] 2025-07-28 02:51:05,001 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 22:51:38] 2025-07-28 02:51:05,015 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 22:51:38] 2025-07-28 02:51:05,015 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 22:51:38] 2025-07-28 02:51:05,015 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 22:51:38] 2025-07-28 02:51:05,015 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 22:51:38] 2025-07-28 02:51:05,015 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 22:51:38] 2025-07-28 02:51:05,016 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 22:51:38] 2025-07-28 02:51:05,016 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 22:51:38] 2025-07-28 02:51:05,016 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 22:51:38] 2025-07-28 02:51:05,016 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 22:51:38] 2025-07-28 02:51:05,016 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 22:51:38] 2025-07-28 02:51:05,016 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 22:51:38] 2025-07-28 02:51:05,016 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 22:51:38] 2025-07-28 02:51:05,016 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 22:51:38] 2025-07-28 02:51:05,016 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 22:51:38] 2025-07-28 02:51:05,016 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 22:51:38] 2025-07-28 02:51:05,016 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 22:51:38] 2025-07-28 02:51:05,016 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 22:51:38] 2025-07-28 02:51:05,016 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 22:51:38] 2025-07-28 02:51:05,016 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 22:51:38] 2025-07-28 02:51:05,016 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 22:51:38] 2025-07-28 02:51:05,016 | INFO     | job 6747626377 has completed (purged errors)
[2025-07-27 22:51:38] 2025-07-28 02:51:05,016 | INFO     | overall cleanup function is called
[2025-07-27 22:51:38] 2025-07-28 02:51:06,023 | INFO     | --- collectZombieJob: --- 10, [472804]
[2025-07-27 22:51:38] 2025-07-28 02:51:06,024 | INFO     | zombie collector waiting for pid 472804
[2025-07-27 22:51:38] 2025-07-28 02:51:06,024 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 22:51:38] 2025-07-28 02:51:06,024 | INFO     | collected zombie processes
[2025-07-27 22:51:38] 2025-07-28 02:51:06,024 | INFO     | will attempt to kill all subprocesses of pid=472804
[2025-07-27 22:51:38] 2025-07-28 02:51:06,217 | INFO     | process IDs to be killed: [472804] (in reverse order)
[2025-07-27 22:51:38] 2025-07-28 02:51:06,297 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 22:51:38] 2025-07-28 02:51:06,297 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 22:51:38] 2025-07-28 02:51:06,307 | INFO     | did not find any defunct processes belonging to 472804
[2025-07-27 22:51:38] 2025-07-28 02:51:06,317 | INFO     | did not find any defunct processes belonging to 472804
[2025-07-27 22:51:38] 2025-07-28 02:51:06,318 | INFO     | ready for new job
[2025-07-27 22:51:38] 2025-07-28 02:51:06,318 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 22:51:38] 2025-07-28 02:51:06,319 | INFO     | ***************************************
[2025-07-27 22:51:38] 2025-07-28 02:51:06,320 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 22:51:38] 2025-07-28 02:51:06,320 | INFO     | ***************************************
[2025-07-27 22:51:38] 2025-07-28 02:51:06,320 | INFO     | 
[2025-07-27 22:51:38] 2025-07-28 02:51:06,336 | INFO     | architecture information:
[2025-07-27 22:51:38] 2025-07-28 02:51:06,336 | INFO     | executing command: cat /etc/os-release
[2025-07-27 22:51:38] 2025-07-28 02:51:06,348 | INFO     | cat /etc/os-release:
[2025-07-27 22:51:38] NAME="CentOS Linux"
[2025-07-27 22:51:38] VERSION="7 (Core)"
[2025-07-27 22:51:38] ID="centos"
[2025-07-27 22:51:38] ID_LIKE="rhel fedora"
[2025-07-27 22:51:38] VERSION_ID="7"
[2025-07-27 22:51:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 22:51:38] ANSI_COLOR="0;31"
[2025-07-27 22:51:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 22:51:38] HOME_URL="https://www.centos.org/"
[2025-07-27 22:51:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 22:51:38] 
[2025-07-27 22:51:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 22:51:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 22:51:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 22:51:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 22:51:38] 
[2025-07-27 22:51:38] 2025-07-28 02:51:06,349 | INFO     | ***************************************
[2025-07-27 22:51:38] 2025-07-28 02:51:06,852 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 22:51:38] 2025-07-28 02:51:06,865 | INFO     | sufficient remaining disk space (58821967872 B)
[2025-07-27 22:51:38] 2025-07-28 02:51:06,866 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 22:51:38] 2025-07-28 02:51:06,866 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 22:51:38] 2025-07-28 02:51:06,866 | INFO     | update_server=False
[2025-07-27 22:51:38] 2025-07-28 02:51:06,866 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 22:51:38] 2025-07-28 02:51:06,866 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 22:51:38] 2025-07-28 02:51:06,866 | INFO     | aborting loop
[2025-07-27 22:51:38] 2025-07-28 02:51:07,152 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 22:51:38] 2025-07-28 02:51:07,440 | INFO     | all payload control threads have been joined
[2025-07-27 22:51:38] 2025-07-28 02:51:07,551 | INFO     | all job control threads have been joined
[2025-07-27 22:51:38] 2025-07-28 02:51:07,594 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 22:51:38] 2025-07-28 02:51:07,871 | INFO     | [job] retrieve thread has finished
[2025-07-27 22:51:38] 2025-07-28 02:51:07,872 | INFO     | [job] job monitor thread has finished
[2025-07-27 22:51:38] 2025-07-28 02:51:07,927 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 22:51:38] 2025-07-28 02:51:07,927 | INFO     | [job] validate thread has finished
[2025-07-27 22:51:38] 2025-07-28 02:51:07,947 | INFO     | all data control threads have been joined
[2025-07-27 22:51:38] 2025-07-28 02:51:08,005 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 22:51:38] 2025-07-28 02:51:08,149 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 22:51:38] 2025-07-28 02:51:08,432 | INFO     | [payload] failed_post thread has finished
[2025-07-27 22:51:38] 2025-07-28 02:51:08,446 | INFO     | [payload] control thread has finished
[2025-07-27 22:51:38] 2025-07-28 02:51:08,556 | INFO     | [job] control thread has finished
[2025-07-27 22:51:38] 2025-07-28 02:51:08,953 | INFO     | [data] control thread has finished
[2025-07-27 22:51:38] 2025-07-28 02:51:09,148 | INFO     | [data] copytool_in thread has finished
[2025-07-27 22:51:38] 2025-07-28 02:51:09,160 | INFO     | [payload] validate_post thread has finished
[2025-07-27 22:51:38] 2025-07-28 02:51:09,600 | INFO     | [data] copytool_out thread has finished
[2025-07-27 22:51:38] 2025-07-28 02:51:09,701 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 22:51:38] 2025-07-28 02:51:10,707 | INFO     | [job] queue monitor thread has finished
[2025-07-27 22:51:38] 2025-07-28 02:51:11,158 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 22:51:38] 2025-07-28 02:51:17,650 | INFO     | job.realtimelogging is not enabled
[2025-07-27 22:51:38] 2025-07-28 02:51:18,655 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 22:51:38] 2025-07-28 02:51:20,523 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140701713377088)>', '<ExcThread(monitor, started 140701199210240)>']
[2025-07-27 22:51:38] 2025-07-28 02:51:25,547 | INFO     | all workflow threads have been joined
[2025-07-27 22:51:38] 2025-07-28 02:51:25,551 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 22:51:38] 2025-07-28 02:51:25,552 | INFO     | traces error code: 0
[2025-07-27 22:51:38] 2025-07-28 02:51:25,552 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 22:51:38] 2025-07-28 02:51:37,857 | INFO     | PID=465816 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 22:51:38] 2025-07-28 02:51:37,857 | INFO     | .. there are 10 such processes running
[2025-07-27 22:51:38] 2025-07-28 02:51:37,857 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 22:51:38] 2025-07-28 02:51:37,857 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 22:51:38] 2025-07-28 02:51:37,857 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 22:51:38] 2025-07-28 02:51:37,857 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 22:51:38] 2025-07-28 02:51:37,857 | INFO     | [monitor] control thread has ended
[2025-07-27 22:51:38] 2025-07-28 02:51:38,004 [wrapper] ==== pilot stdout END ====
[2025-07-27 22:51:38] 2025-07-28 02:51:38,007 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 22:51:38] 2025-07-28 02:51:38,010 [wrapper] pilotpid: 465816
[2025-07-27 22:51:38] 2025-07-28 02:51:38,012 [wrapper] Pilot exit status: 0
[2025-07-27 22:51:38] 2025-07-28 02:51:38,021 [wrapper] pandaids: 6747626377
[2025-07-27 22:51:38] 2025-07-28 02:51:38,080 [wrapper] cleanup supervisor_pilot  615750 465817
[2025-07-27 22:51:38] 2025-07-28 02:51:38,082 [wrapper] Test setup, not cleaning
[2025-07-27 22:51:38] 2025-07-28 02:51:38,085 [wrapper] apfmon messages muted
[2025-07-27 22:51:38] 2025-07-28 02:51:38,087 [wrapper] ==== wrapper stdout END ====
[2025-07-27 22:51:38] 2025-07-28 02:51:38,089 [wrapper] ==== wrapper stderr END ====
[2025-07-27 22:51:38]  *** Error codes and diagnostics ***
[2025-07-27 22:51:38]     "exeErrorCode": 0,
[2025-07-27 22:51:38]     "exeErrorDiag": "",
[2025-07-27 22:51:38]     "pilotErrorCode": 0,
[2025-07-27 22:51:38]     "pilotErrorDiag": "",
[2025-07-27 22:51:38]  *** Listing of results directory ***
[2025-07-27 22:51:38] total 348392
[2025-07-27 22:51:38] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 15:12 pilot3.tar.gz
[2025-07-27 22:51:38] -rwx------. 1 boincer umatlas     36292 Jul 27 15:18 runpilot2-wrapper.sh
[2025-07-27 22:51:38] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 15:18 queuedata.json
[2025-07-27 22:51:38] -rw-r--r--. 1 boincer umatlas       100 Jul 27 21:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 22:51:38] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 21:36 run_atlas
[2025-07-27 22:51:38] -rw-r--r--. 1 boincer umatlas       105 Jul 27 21:36 job.xml
[2025-07-27 22:51:38] -rw-r--r--. 2 boincer umatlas 148122593 Jul 27 21:36 EVNT.45743347._002952.pool.root.1
[2025-07-27 22:51:38] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 21:36 start_atlas.sh
[2025-07-27 22:51:38] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 21:36 shared
[2025-07-27 22:51:38] -rw-r--r--. 2 boincer umatlas    542901 Jul 27 21:36 input.tar.gz
[2025-07-27 22:51:38] -rw-r--r--. 1 boincer umatlas         0 Jul 27 21:36 boinc_lockfile
[2025-07-27 22:51:38] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 21:36 pandaJob.out
[2025-07-27 22:51:38] -rw-------. 1 boincer umatlas    980125 Jul 27 21:37 agis_schedconf.cvmfs.json
[2025-07-27 22:51:38] -rw-------. 1 boincer umatlas   1593052 Jul 27 21:37 agis_ddmendpoints.agis.ALL.json
[2025-07-27 22:51:38] drwx------. 4 boincer umatlas      4096 Jul 27 21:37 pilot3
[2025-07-27 22:51:38] -rw-r--r--. 1 boincer umatlas      6842 Jul 27 22:48 init_data.xml
[2025-07-27 22:51:38] -rw-------. 1 boincer umatlas 203155878 Jul 27 22:50 HITS.45743349._054479.pool.root.1
[2025-07-27 22:51:38] -rw-r--r--. 1 boincer umatlas       529 Jul 27 22:50 boinc_task_state.xml
[2025-07-27 22:51:38] -rw-------. 1 boincer umatlas        95 Jul 27 22:50 pilot_heartbeat.json
[2025-07-27 22:51:38] -rw-------. 1 boincer umatlas      1038 Jul 27 22:50 memory_monitor_summary.json
[2025-07-27 22:51:38] -rw-------. 1 boincer umatlas    352260 Jul 27 22:50 log.45743349._054479.job.log.tgz.1
[2025-07-27 22:51:38] -rw-------. 1 boincer umatlas      7830 Jul 27 22:51 heartbeat.json
[2025-07-27 22:51:38] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 22:51 boinc_mmap_file
[2025-07-27 22:51:38] -rw-r--r--. 1 boincer umatlas        27 Jul 27 22:51 wrapper_checkpoint.txt
[2025-07-27 22:51:38] -rw-------. 1 boincer umatlas       822 Jul 27 22:51 pilotlog.txt
[2025-07-27 22:51:38] -rw-------. 1 boincer umatlas    443350 Jul 27 22:51 log.45743349._054479.job.log.1
[2025-07-27 22:51:38] -rw-------. 1 boincer umatlas       357 Jul 27 22:51 output.list
[2025-07-27 22:51:38] -rw-r--r--. 1 boincer umatlas       620 Jul 27 22:51 runtime_log
[2025-07-27 22:51:38] -rw-------. 1 boincer umatlas    819200 Jul 27 22:51 result.tar.gz
[2025-07-27 22:51:38] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 22:51 runtime_log.err
[2025-07-27 22:51:38] -rw-------. 1 boincer umatlas       655 Jul 27 22:51 bY6NDmx3L07n9Rq4apOajLDm4fhM0noT9bVof3QYDms02KDmZrAdkm.diag
[2025-07-27 22:51:38] -rw-r--r--. 1 boincer umatlas     21912 Jul 27 22:51 stderr.txt
[2025-07-27 22:51:38] HITS file was successfully produced:
[2025-07-27 22:51:38] -rw-------. 1 boincer umatlas 203155878 Jul 27 22:50 shared/HITS.pool.root.1
[2025-07-27 22:51:38]  *** Contents of shared directory: ***
[2025-07-27 22:51:38] total 344404
[2025-07-27 22:51:38] -rw-r--r--. 2 boincer umatlas 148122593 Jul 27 21:36 ATLAS.root_0
[2025-07-27 22:51:38] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 21:36 start_atlas.sh
[2025-07-27 22:51:38] -rw-r--r--. 2 boincer umatlas    542901 Jul 27 21:36 input.tar.gz
[2025-07-27 22:51:38] -rw-------. 1 boincer umatlas 203155878 Jul 27 22:50 HITS.pool.root.1
[2025-07-27 22:51:38] -rw-------. 1 boincer umatlas    819200 Jul 27 22:51 result.tar.gz
22:51:39 (462213): run_atlas exited; CPU time 47089.593237
22:51:39 (462213): called boinc_finish(0)

</stderr_txt>
]]>

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