Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:14:29 (2254807): wrapper (7.7.26015): starting
12:14:29 (2254807): wrapper: running run_atlas (--nthreads 6)
[2025-07-28 12:14:29] Arguments: --nthreads 6
[2025-07-28 12:14:29] Threads: 6
[2025-07-28 12:14:29] Checking for CVMFS
[2025-07-28 12:14:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 12:14:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 12:14:29] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 12:14:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 12:14:29] 2.11.5.0 2723278 4661 74340 148832 1 57 52236704 52428800 1858 130560 0 10332404 99.997 160428 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-07-28 12:14:29] CVMFS is ok
[2025-07-28 12:14:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 12:14:29] Checking for apptainer binary...
[2025-07-28 12:14:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 12:14:29] Running /usr/bin/apptainer --version
[2025-07-28 12:14:29] apptainer version 1.3.5-1.el9
[2025-07-28 12:14:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 12:14:29] testio008
[2025-07-28 12:14:29] apptainer works
[2025-07-28 12:14:29] Set ATHENA_PROC_NUMBER=6
[2025-07-28 12:14:29] Set ATHENA_CORE_NUMBER=6
[2025-07-28 12:14:29] Starting ATLAS job with PandaID=6747599823
[2025-07-28 12:14:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 13:39:28]  *** The last 200 lines of the pilot log: ***
[2025-07-28 13:39:28] 2025-07-28 04:37:35,308 | INFO     | summary of transferred files:
[2025-07-28 13:39:28] 2025-07-28 04:37:35,308 | INFO     |  -- lfn=log.45743349._054206.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 13:39:28] 2025-07-28 04:37:35,308 | INFO     | stage-out finished correctly
[2025-07-28 13:39:28] 2025-07-28 04:37:35,356 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 13:39:28] 2025-07-28 04:37:35,407 | INFO     | job 6747599823 has state=finished
[2025-07-28 13:39:28] 2025-07-28 04:37:35,407 | INFO     | preparing for final server update for job 6747599823 in state='finished'
[2025-07-28 13:39:28] 2025-07-28 04:37:35,407 | INFO     | this job has now completed (state=finished)
[2025-07-28 13:39:28] 2025-07-28 04:37:35,407 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 13:39:28] 2025-07-28 04:37:35,407 | INFO     | log transfer has been attempted: DONE
[2025-07-28 13:39:28] 2025-07-28 04:37:35,408 | INFO     | job 6747599823 has finished - writing final server update
[2025-07-28 13:39:28] 2025-07-28 04:37:35,408 | INFO     | total number of processed events: 400 (read)
[2025-07-28 13:39:28] 2025-07-28 04:37:35,408 | INFO     | executing command: lscpu
[2025-07-28 13:39:28] 2025-07-28 04:37:35,420 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 13:39:28] 2025-07-28 04:37:38,577 | WARNING  | process 2265177 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 13:39:28] 2025-07-28 04:37:38,577 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6747599823/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 13:39:28] 2025-07-28 04:37:38,578 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6747599823/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 13:39:28] 2025-07-28 04:37:38,578 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2609782 B
[2025-07-28 13:39:28] 2025-07-28 04:37:38,578 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15540 B
[2025-07-28 13:39:28] 2025-07-28 04:37:38,578 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-07-28 13:39:28] 2025-07-28 04:37:49,921 | INFO     | PID=2258551 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 13:39:28] 2025-07-28 04:37:49,921 | INFO     | .. there are 3 such processes running
[2025-07-28 13:39:28] 2025-07-28 04:38:12,017 | INFO     | PID=2258551 has CPU usage=0.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 13:39:28] 2025-07-28 04:38:12,018 | INFO     | .. there are 3 such processes running
[2025-07-28 13:39:28] 2025-07-28 04:38:34,119 | INFO     | PID=2258551 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 13:39:28] 2025-07-28 04:38:34,119 | INFO     | .. there are 3 such processes running
[2025-07-28 13:39:28] 2025-07-28 04:38:56,257 | INFO     | PID=2258551 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 13:39:28] 2025-07-28 04:38:56,257 | INFO     | .. there are 3 such processes running
[2025-07-28 13:39:28] 2025-07-28 04:38:56,489 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 13:39:28] 2025-07-28 04:38:56,495 | INFO     | found 12 cores (12 cores per socket, 1 socket) , CPU MHz: 1999.9978500000002
[2025-07-28 13:39:28] 2025-07-28 04:38:56,499 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6747599823/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 13:39:28] 2025-07-28 04:38:56,500 | INFO     | extracted standard info from prmon json
[2025-07-28 13:39:28] 2025-07-28 04:38:56,501 | INFO     | sufficient remaining disk space (271054798848 B)
[2025-07-28 13:39:28] 2025-07-28 04:38:56,501 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 13:39:28] 2025-07-28 04:38:56,501 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 13:39:28] 2025-07-28 04:38:56,501 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 13:39:28] 2025-07-28 04:38:56,501 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-28 13:39:28] 2025-07-28 04:38:56,501 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 13:39:28] 2025-07-28 04:38:56,503 | INFO     | fitting pss+swap vs Time
[2025-07-28 13:39:28] 2025-07-28 04:38:56,504 | INFO     | sum of square deviations: 130793150.0
[2025-07-28 13:39:28] 2025-07-28 04:38:56,504 | INFO     | sum of deviations: 16369985193.0
[2025-07-28 13:39:28] 2025-07-28 04:38:56,504 | INFO     | mean x: 1753675055.0
[2025-07-28 13:39:28] 2025-07-28 04:38:56,504 | INFO     | mean y: 2368965.0933333333
[2025-07-28 13:39:28] 2025-07-28 04:38:56,504 | INFO     | -- intersect: -219486455057.2921
[2025-07-28 13:39:28] 2025-07-28 04:38:56,504 | INFO     | intersect: -219486455057.2921
[2025-07-28 13:39:28] 2025-07-28 04:38:56,505 | INFO     | chi2: 1.7209969748427405
[2025-07-28 13:39:28] 2025-07-28 04:38:56,505 | INFO     | -- intersect: -219486455057.2921
[2025-07-28 13:39:28] 2025-07-28 04:38:56,505 | INFO     | current memory leak: 125.16 B/s (using 75 data points, chi2=1.72)
[2025-07-28 13:39:28] 2025-07-28 04:38:56,505 | INFO     | could have reported an average CPU frequency of 3576 MHz (6 samples)
[2025-07-28 13:39:28] 2025-07-28 04:38:56,505 | INFO     | ..............................
[2025-07-28 13:39:28] 2025-07-28 04:38:56,505 | INFO     | . Timing measurements:
[2025-07-28 13:39:28] 2025-07-28 04:38:56,505 | INFO     | . get job = 0 s
[2025-07-28 13:39:28] 2025-07-28 04:38:56,506 | INFO     | . initial setup = 4 s
[2025-07-28 13:39:28] 2025-07-28 04:38:56,506 | INFO     | . payload setup = 2 s
[2025-07-28 13:39:28] 2025-07-28 04:38:56,506 | INFO     | . stage-in = 0 s
[2025-07-28 13:39:28] 2025-07-28 04:38:56,506 | INFO     | . payload execution = 4958 s
[2025-07-28 13:39:28] 2025-07-28 04:38:56,506 | INFO     | . stage-out = 1 s
[2025-07-28 13:39:28] 2025-07-28 04:38:56,506 | INFO     | . log creation = 0 s
[2025-07-28 13:39:28] 2025-07-28 04:38:56,506 | INFO     | ..............................
[2025-07-28 13:39:28] 2025-07-28 04:38:56,552 | INFO     | size of work directory /var/lib/boinc/slots/3/PanDA_Pilot-6747599823: 2907550 B (within 2537553920 B limit)
[2025-07-28 13:39:28] 2025-07-28 04:38:56,580 | INFO     | pfn file=/var/lib/boinc/slots/3/PanDA_Pilot-6747599823/HITS.45743349._054206.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-28 13:39:28] 2025-07-28 04:38:56,590 | INFO     | total size of present files: 0 B (workdir size: 2907550 B)
[2025-07-28 13:39:28] 2025-07-28 04:38:56,595 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/3/PanDA_Pilot-6747599823/HITS.45743349._054206.pool.root.1 since it does not exist
[2025-07-28 13:39:28] 2025-07-28 04:38:56,656 | INFO     | number of running child processes to parent process 2265177: 1
[2025-07-28 13:39:28] 2025-07-28 04:38:56,657 | INFO     | maximum number of monitored processes: 6
[2025-07-28 13:39:28] 2025-07-28 04:38:56,657 | INFO     | aborting job monitoring since job object (job id=6747599823) has expired
[2025-07-28 13:39:28] 2025-07-28 04:38:56,661 | INFO     | 
[2025-07-28 13:39:28] 2025-07-28 04:38:56,661 | INFO     | job summary report
[2025-07-28 13:39:28] 2025-07-28 04:38:56,661 | INFO     | --------------------------------------------------
[2025-07-28 13:39:28] 2025-07-28 04:38:56,662 | INFO     | PanDA job id: 6747599823
[2025-07-28 13:39:28] 2025-07-28 04:38:56,662 | INFO     | task id: 45743349
[2025-07-28 13:39:28] 2025-07-28 04:38:56,662 | INFO     | errors: (none)
[2025-07-28 13:39:28] 2025-07-28 04:38:56,662 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 13:39:28] 2025-07-28 04:38:56,662 | INFO     | pilot state: finished 
[2025-07-28 13:39:28] 2025-07-28 04:38:56,662 | INFO     | transexitcode: 0
[2025-07-28 13:39:28] 2025-07-28 04:38:56,662 | INFO     | exeerrorcode: 0
[2025-07-28 13:39:28] 2025-07-28 04:38:56,662 | INFO     | exeerrordiag: 
[2025-07-28 13:39:28] 2025-07-28 04:38:56,662 | INFO     | exitcode: 0
[2025-07-28 13:39:28] 2025-07-28 04:38:56,662 | INFO     | exitmsg: OK
[2025-07-28 13:39:28] 2025-07-28 04:38:56,662 | INFO     | cpuconsumptiontime: 25232 s
[2025-07-28 13:39:28] 2025-07-28 04:38:56,662 | INFO     | nevents: 400
[2025-07-28 13:39:28] 2025-07-28 04:38:56,662 | INFO     | neventsw: 0
[2025-07-28 13:39:28] 2025-07-28 04:38:56,662 | INFO     | pid: 2265177
[2025-07-28 13:39:28] 2025-07-28 04:38:56,662 | INFO     | pgrp: 2265177
[2025-07-28 13:39:28] 2025-07-28 04:38:56,662 | INFO     | corecount: 6
[2025-07-28 13:39:28] 2025-07-28 04:38:56,662 | INFO     | event service: False
[2025-07-28 13:39:28] 2025-07-28 04:38:56,663 | INFO     | sizes: {0: 2397474, 1: 2397736, 10: 2397764, 4964: 2424065, 4966: 2433119, 5047: 2433285}
[2025-07-28 13:39:28] 2025-07-28 04:38:56,663 | INFO     | --------------------------------------------------
[2025-07-28 13:39:28] 2025-07-28 04:38:56,663 | INFO     | 
[2025-07-28 13:39:28] 2025-07-28 04:38:56,663 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-07-28 13:39:28] 2025-07-28 04:38:56,678 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 13:39:28] 2025-07-28 04:38:56,679 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 13:39:28] 2025-07-28 04:38:56,679 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 13:39:28] 2025-07-28 04:38:56,679 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 13:39:28] 2025-07-28 04:38:56,679 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 13:39:28] 2025-07-28 04:38:56,679 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 13:39:28] 2025-07-28 04:38:56,679 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 13:39:28] 2025-07-28 04:38:56,679 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 13:39:28] 2025-07-28 04:38:56,679 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 13:39:28] 2025-07-28 04:38:56,679 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 13:39:28] 2025-07-28 04:38:56,679 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 13:39:28] 2025-07-28 04:38:56,679 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 13:39:28] 2025-07-28 04:38:56,679 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 13:39:28] 2025-07-28 04:38:56,679 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 13:39:28] 2025-07-28 04:38:56,679 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 13:39:28] 2025-07-28 04:38:56,679 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 13:39:28] 2025-07-28 04:38:56,680 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 13:39:28] 2025-07-28 04:38:56,680 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 13:39:28] 2025-07-28 04:38:56,680 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 13:39:28] 2025-07-28 04:38:56,680 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 13:39:28] 2025-07-28 04:38:56,680 | INFO     | job 6747599823 has completed (purged errors)
[2025-07-28 13:39:28] 2025-07-28 04:38:56,680 | INFO     | overall cleanup function is called
[2025-07-28 13:39:28] 2025-07-28 04:38:57,687 | INFO     | --- collectZombieJob: --- 10, [2265177]
[2025-07-28 13:39:28] 2025-07-28 04:38:57,687 | INFO     | zombie collector waiting for pid 2265177
[2025-07-28 13:39:28] 2025-07-28 04:38:57,687 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 13:39:28] 2025-07-28 04:38:57,687 | INFO     | collected zombie processes
[2025-07-28 13:39:28] 2025-07-28 04:38:57,687 | INFO     | will attempt to kill all subprocesses of pid=2265177
[2025-07-28 13:39:28] 2025-07-28 04:38:57,755 | INFO     | process IDs to be killed: [2265177] (in reverse order)
[2025-07-28 13:39:28] 2025-07-28 04:38:57,787 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 13:39:28] 2025-07-28 04:38:57,788 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 13:39:28] 2025-07-28 04:38:57,791 | INFO     | did not find any defunct processes belonging to 2265177
[2025-07-28 13:39:28] 2025-07-28 04:38:57,793 | INFO     | did not find any defunct processes belonging to 2265177
[2025-07-28 13:39:28] 2025-07-28 04:38:57,793 | INFO     | ready for new job
[2025-07-28 13:39:28] 2025-07-28 04:38:57,793 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 13:39:28] 2025-07-28 04:38:57,795 | INFO     | ***************************************
[2025-07-28 13:39:28] 2025-07-28 04:38:57,795 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 13:39:28] 2025-07-28 04:38:57,795 | INFO     | ***************************************
[2025-07-28 13:39:28] 2025-07-28 04:38:57,795 | INFO     | 
[2025-07-28 13:39:28] 2025-07-28 04:38:57,796 | INFO     | architecture information:
[2025-07-28 13:39:28] 2025-07-28 04:38:57,796 | INFO     | executing command: cat /etc/os-release
[2025-07-28 13:39:28] 2025-07-28 04:38:57,807 | INFO     | cat /etc/os-release:
[2025-07-28 13:39:28] NAME="CentOS Linux"
[2025-07-28 13:39:28] VERSION="7 (Core)"
[2025-07-28 13:39:28] ID="centos"
[2025-07-28 13:39:28] ID_LIKE="rhel fedora"
[2025-07-28 13:39:28] VERSION_ID="7"
[2025-07-28 13:39:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 13:39:28] ANSI_COLOR="0;31"
[2025-07-28 13:39:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 13:39:28] HOME_URL="https://www.centos.org/"
[2025-07-28 13:39:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 13:39:28] 
[2025-07-28 13:39:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 13:39:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 13:39:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 13:39:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 13:39:28] 
[2025-07-28 13:39:28] 2025-07-28 04:38:57,807 | INFO     | ***************************************
[2025-07-28 13:39:28] 2025-07-28 04:38:58,310 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-07-28 13:39:28] 2025-07-28 04:38:58,321 | INFO     | sufficient remaining disk space (271057944576 B)
[2025-07-28 13:39:28] 2025-07-28 04:38:58,321 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 13:39:28] 2025-07-28 04:38:58,321 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 13:39:28] 2025-07-28 04:38:58,321 | INFO     | update_server=False
[2025-07-28 13:39:28] 2025-07-28 04:38:58,322 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 13:39:28] 2025-07-28 04:38:58,322 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 13:39:28] 2025-07-28 04:38:58,322 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 13:39:28] 2025-07-28 04:38:58,322 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 13:39:28] 2025-07-28 04:38:58,322 | INFO     | aborting loop
[2025-07-28 13:39:28] 2025-07-28 04:38:58,439 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 13:39:28] 2025-07-28 04:38:58,665 | INFO     | all data control threads have been joined
[2025-07-28 13:39:28] 2025-07-28 04:38:59,327 | INFO     | [job] retrieve thread has finished
[2025-07-28 13:39:28] 2025-07-28 04:38:59,327 | INFO     | [job] queue monitor thread has finished
[2025-07-28 13:39:28] 2025-07-28 04:38:59,328 | INFO     | [job] job monitor thread has finished
[2025-07-28 13:39:28] 2025-07-28 04:38:59,513 | INFO     | [job] validate thread has finished
[2025-07-28 13:39:28] 2025-07-28 04:38:59,591 | INFO     | all payload control threads have been joined
[2025-07-28 13:39:28] 2025-07-28 04:38:59,641 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 13:39:28] 2025-07-28 04:38:59,642 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 13:39:28] 2025-07-28 04:38:59,670 | INFO     | [data] control thread has finished
[2025-07-28 13:39:28] 2025-07-28 04:38:59,821 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 13:39:28] 2025-07-28 04:38:59,985 | INFO     | all job control threads have been joined
[2025-07-28 13:39:28] 2025-07-28 04:39:00,132 | INFO     | [payload] failed_post thread has finished
[2025-07-28 13:39:28] 2025-07-28 04:39:00,445 | INFO     | [data] copytool_out thread has finished
[2025-07-28 13:39:28] 2025-07-28 04:39:00,597 | INFO     | [payload] control thread has finished
[2025-07-28 13:39:28] 2025-07-28 04:39:00,653 | INFO     | [payload] validate_post thread has finished
[2025-07-28 13:39:28] 2025-07-28 04:39:00,784 | INFO     | [data] copytool_in thread has finished
[2025-07-28 13:39:28] 2025-07-28 04:39:00,990 | INFO     | [job] control thread has finished
[2025-07-28 13:39:28] 2025-07-28 04:39:02,327 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 13:39:28] 2025-07-28 04:39:08,922 | INFO     | job.realtimelogging is not enabled
[2025-07-28 13:39:28] 2025-07-28 04:39:09,923 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 13:39:28] 2025-07-28 04:39:11,415 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139840007673664)>', '<ExcThread(monitor, started 139839294924544)>']
[2025-07-28 13:39:28] 2025-07-28 04:39:16,427 | INFO     | all workflow threads have been joined
[2025-07-28 13:39:28] 2025-07-28 04:39:16,427 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 13:39:28] 2025-07-28 04:39:16,428 | INFO     | traces error code: 0
[2025-07-28 13:39:28] 2025-07-28 04:39:16,428 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 13:39:28] 2025-07-28 04:39:28,349 | INFO     | PID=2258551 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 13:39:28] 2025-07-28 04:39:28,353 | INFO     | .. there are 3 such processes running
[2025-07-28 13:39:28] 2025-07-28 04:39:28,353 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 13:39:28] 2025-07-28 04:39:28,353 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 13:39:28] 2025-07-28 04:39:28,353 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 13:39:28] 2025-07-28 04:39:28,354 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 13:39:28] 2025-07-28 04:39:28,354 | INFO     | [monitor] control thread has ended
[2025-07-28 13:39:28] 2025-07-28 04:39:28,411 [wrapper] ==== pilot stdout END ====
[2025-07-28 13:39:28] 2025-07-28 04:39:28,412 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 13:39:28] 2025-07-28 04:39:28,413 [wrapper] pilotpid: 2258551
[2025-07-28 13:39:28] 2025-07-28 04:39:28,414 [wrapper] Pilot exit status: 0
[2025-07-28 13:39:28] 2025-07-28 04:39:28,417 [wrapper] pandaids: 6747599823
[2025-07-28 13:39:28] 2025-07-28 04:39:28,428 [wrapper] cleanup supervisor_pilot 2323278 2258552
[2025-07-28 13:39:28] 2025-07-28 04:39:28,429 [wrapper] Test setup, not cleaning
[2025-07-28 13:39:28] 2025-07-28 04:39:28,430 [wrapper] apfmon messages muted
[2025-07-28 13:39:28] 2025-07-28 04:39:28,431 [wrapper] ==== wrapper stdout END ====
[2025-07-28 13:39:28] 2025-07-28 04:39:28,432 [wrapper] ==== wrapper stderr END ====
[2025-07-28 13:39:28]  *** Error codes and diagnostics ***
[2025-07-28 13:39:28]     "exeErrorCode": 0,
[2025-07-28 13:39:28]     "exeErrorDiag": "",
[2025-07-28 13:39:28]     "pilotErrorCode": 0,
[2025-07-28 13:39:28]     "pilotErrorDiag": "",
[2025-07-28 13:39:28]  *** Listing of results directory ***
[2025-07-28 13:39:28] total 349504
[2025-07-28 13:39:28] -rw-r--r--. 1 boinc boinc    530466 Jul 28 03:41 pilot3.tar.gz
[2025-07-28 13:39:28] -rw-r--r--. 1 boinc boinc      5112 Jul 28 04:04 queuedata.json
[2025-07-28 13:39:28] -rwx------. 1 boinc boinc     36292 Jul 28 04:08 runpilot2-wrapper.sh
[2025-07-28 13:39:28] -rw-r--r--. 1 boinc boinc       100 Jul 28 12:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 13:39:28] -rwxr-xr-x. 1 boinc boinc      7986 Jul 28 12:14 run_atlas
[2025-07-28 13:39:28] -rw-r--r--. 1 boinc boinc       105 Jul 28 12:14 job.xml
[2025-07-28 13:39:28] -rw-r--r--. 2 boinc boinc     15095 Jul 28 12:14 start_atlas.sh
[2025-07-28 13:39:28] drwxrwx--x. 2 boinc boinc        68 Jul 28 12:14 shared
[2025-07-28 13:39:28] -rw-r--r--. 2 boinc boinc    542892 Jul 28 12:14 input.tar.gz
[2025-07-28 13:39:28] -rw-r--r--. 1 boinc boinc      9508 Jul 28 12:14 init_data.xml
[2025-07-28 13:39:28] -rw-r--r--. 2 boinc boinc 144649952 Jul 28 12:14 EVNT.45743347._002897.pool.root.1
[2025-07-28 13:39:28] -rw-r--r--. 1 boinc boinc         0 Jul 28 12:14 boinc_lockfile
[2025-07-28 13:39:28] -rw-r--r--. 1 boinc boinc      2562 Jul 28 12:14 pandaJob.out
[2025-07-28 13:39:28] -rw-------. 1 boinc boinc    980125 Jul 28 12:14 agis_schedconf.cvmfs.json
[2025-07-28 13:39:28] -rw-------. 1 boinc boinc   1593052 Jul 28 12:14 agis_ddmendpoints.agis.ALL.json
[2025-07-28 13:39:28] drwx------. 4 boinc boinc      4096 Jul 28 12:14 pilot3
[2025-07-28 13:39:28] -rw-------. 1 boinc boinc 207860796 Jul 28 13:37 HITS.45743349._054206.pool.root.1
[2025-07-28 13:39:28] -rw-r--r--. 1 boinc boinc       529 Jul 28 13:37 boinc_task_state.xml
[2025-07-28 13:39:28] -rw-------. 1 boinc boinc      1020 Jul 28 13:37 memory_monitor_summary.json
[2025-07-28 13:39:28] -rw-------. 1 boinc boinc    268496 Jul 28 13:37 log.45743349._054206.job.log.tgz.1
[2025-07-28 13:39:28] -rw-------. 1 boinc boinc      7764 Jul 28 13:38 heartbeat.json
[2025-07-28 13:39:28] -rw-r--r--. 1 boinc boinc      8192 Jul 28 13:39 boinc_mmap_file
[2025-07-28 13:39:28] -rw-r--r--. 1 boinc boinc        27 Jul 28 13:39 wrapper_checkpoint.txt
[2025-07-28 13:39:28] -rw-------. 1 boinc boinc       822 Jul 28 13:39 pilotlog.txt
[2025-07-28 13:39:28] -rw-------. 1 boinc boinc        95 Jul 28 13:39 pilot_heartbeat.json
[2025-07-28 13:39:28] -rw-------. 1 boinc boinc    491215 Jul 28 13:39 log.45743349._054206.job.log.1
[2025-07-28 13:39:28] -rw-------. 1 boinc boinc       357 Jul 28 13:39 output.list
[2025-07-28 13:39:28] -rw-r--r--. 1 boinc boinc       620 Jul 28 13:39 runtime_log
[2025-07-28 13:39:28] -rw-------. 1 boinc boinc    778240 Jul 28 13:39 result.tar.gz
[2025-07-28 13:39:28] -rw-r--r--. 1 boinc boinc      8618 Jul 28 13:39 runtime_log.err
[2025-07-28 13:39:28] -rw-------. 1 boinc boinc       642 Jul 28 13:39 8RaNDmpuL07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmPBWLDmNjo8Pn.diag
[2025-07-28 13:39:28] -rw-r--r--. 1 boinc boinc     22345 Jul 28 13:39 stderr.txt
[2025-07-28 13:39:28] HITS file was successfully produced:
[2025-07-28 13:39:28] -rw-------. 1 boinc boinc 207860796 Jul 28 13:37 shared/HITS.pool.root.1
[2025-07-28 13:39:28]  *** Contents of shared directory: ***
[2025-07-28 13:39:28] total 345560
[2025-07-28 13:39:28] -rw-r--r--. 2 boinc boinc     15095 Jul 28 12:14 start_atlas.sh
[2025-07-28 13:39:28] -rw-r--r--. 2 boinc boinc    542892 Jul 28 12:14 input.tar.gz
[2025-07-28 13:39:28] -rw-r--r--. 2 boinc boinc 144649952 Jul 28 12:14 ATLAS.root_0
[2025-07-28 13:39:28] -rw-------. 1 boinc boinc 207860796 Jul 28 13:37 HITS.pool.root.1
[2025-07-28 13:39:28] -rw-------. 1 boinc boinc    778240 Jul 28 13:39 result.tar.gz
13:39:30 (2254807): run_atlas exited; CPU time 25264.709361
13:39:30 (2254807): called boinc_finish(0)

</stderr_txt>
]]>

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