Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:25:04 (27777): wrapper (7.7.26015): starting
20:25:04 (27777): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 20:25:04] Arguments: --nthreads 12
[2025-07-27 20:25:04] Threads: 12
[2025-07-27 20:25:04] Checking for CVMFS
[2025-07-27 20:25:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 20:25:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 20:25:04] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 20:25:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 20:25:04] 2.11.2.0 2979 112719 103548 148829 0 56 15899364 20275200 1 130560 0 38755294 99.971 9540402 10591 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 20:25:04] CVMFS is ok
[2025-07-27 20:25:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 20:25:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 20:25:04] Further information can be found at the LHC@home message board.
[2025-07-27 20:25:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 20:25:04] Checking for apptainer binary...
[2025-07-27 20:25:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 20:25:04] Running /usr/bin/apptainer --version
[2025-07-27 20:25:05] apptainer version 1.3.2-1.el7
[2025-07-27 20:25:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 20:25:06] c-205-7.aglt2.org
[2025-07-27 20:25:06] apptainer works
[2025-07-27 20:25:06] Set ATHENA_PROC_NUMBER=12
[2025-07-27 20:25:06] Set ATHENA_CORE_NUMBER=12
[2025-07-27 20:25:06] Starting ATLAS job with PandaID=6747411489
[2025-07-27 20:25:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 21:44:44]  *** The last 200 lines of the pilot log: ***
[2025-07-27 21:44:44]  is_tar=False
[2025-07-27 21:44:44]  lfn=log.45743349._048703.job.log.tgz.1
[2025-07-27 21:44:44]  mtime=0
[2025-07-27 21:44:44]  protocol_id=None
[2025-07-27 21:44:44]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 21:44:44]  replicas=None
[2025-07-27 21:44:44]  scope=mc23_13p6TeV
[2025-07-27 21:44:44]  status=None
[2025-07-27 21:44:44]  status_code=0
[2025-07-27 21:44:44]  storage_token=
[2025-07-27 21:44:44]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747411489/log.45743349._048703.job.log.tgz.1
[2025-07-27 21:44:44]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f0/8f/log.45743349._048703.job.log.tgz.1
[2025-07-27 21:44:44]  workdir=None
[2025-07-27 21:44:44] ]
[2025-07-27 21:44:44] 2025-07-28 01:44:03,838 | INFO     | transferring file log.45743349._048703.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747411489/log.45743349._048703.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 21:44:44] 2025-07-28 01:44:03,838 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747411489/log.45743349._048703.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._048703.job
[2025-07-27 21:44:44] 2025-07-28 01:44:03,860 | INFO     | adding to output.list: log.45743349._048703.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f0/8f/log.45743349._048703.job.log.tg
[2025-07-27 21:44:44] 2025-07-28 01:44:03,861 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 21:44:44] 2025-07-28 01:44:03,861 | INFO     | summary of transferred files:
[2025-07-27 21:44:44] 2025-07-28 01:44:03,861 | INFO     |  -- lfn=log.45743349._048703.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 21:44:44] 2025-07-28 01:44:03,862 | INFO     | stage-out finished correctly
[2025-07-27 21:44:44] 2025-07-28 01:44:03,947 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 21:44:44] 2025-07-28 01:44:05,952 | INFO     | PID=31389 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 21:44:44] 2025-07-28 01:44:06,926 | INFO     | job 6747411489 has state=finished
[2025-07-27 21:44:44] 2025-07-28 01:44:06,926 | INFO     | preparing for final server update for job 6747411489 in state='finished'
[2025-07-27 21:44:44] 2025-07-28 01:44:06,994 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-27 21:44:44] 2025-07-28 01:44:06,994 | INFO     | this job has now completed (state=finished)
[2025-07-27 21:44:44] 2025-07-28 01:44:06,994 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 21:44:44] 2025-07-28 01:44:06,994 | INFO     | log transfer has been attempted: DONE
[2025-07-27 21:44:44] 2025-07-28 01:44:06,994 | INFO     | job 6747411489 has finished - writing final server update
[2025-07-27 21:44:44] 2025-07-28 01:44:06,995 | INFO     | total number of processed events: 400 (read)
[2025-07-27 21:44:44] 2025-07-28 01:44:06,995 | INFO     | executing command: lscpu
[2025-07-27 21:44:44] 2025-07-28 01:44:07,021 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 21:44:44] 2025-07-28 01:44:09,516 | WARNING  | process 5534 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 21:44:44] 2025-07-28 01:44:09,516 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747411489/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 21:44:44] 2025-07-28 01:44:09,606 | INFO     | number of running child processes to parent process 5534: 1
[2025-07-27 21:44:44] 2025-07-28 01:44:09,606 | INFO     | maximum number of monitored processes: 6
[2025-07-27 21:44:44] 2025-07-28 01:44:11,960 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-27 21:44:44] 2025-07-28 01:44:11,964 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1773.5
[2025-07-27 21:44:44] 2025-07-28 01:44:12,011 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747411489/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 21:44:44] 2025-07-28 01:44:12,012 | INFO     | extracted standard info from prmon json
[2025-07-27 21:44:44] 2025-07-28 01:44:12,012 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 21:44:44] 2025-07-28 01:44:12,012 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 21:44:44] 2025-07-28 01:44:12,012 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 21:44:44] 2025-07-28 01:44:12,012 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 21:44:44] 2025-07-28 01:44:12,014 | INFO     | fitting pss+swap vs Time
[2025-07-27 21:44:44] 2025-07-28 01:44:12,014 | INFO     | sum of square deviations: 106336877.5
[2025-07-27 21:44:44] 2025-07-28 01:44:12,015 | INFO     | sum of deviations: -7791774945.5
[2025-07-27 21:44:44] 2025-07-28 01:44:12,015 | INFO     | mean x: 1753664759.5
[2025-07-27 21:44:44] 2025-07-28 01:44:12,015 | INFO     | mean y: 2859131.5285714287
[2025-07-27 21:44:44] 2025-07-28 01:44:12,015 | INFO     | -- intersect: 128501658956.43768
[2025-07-27 21:44:44] 2025-07-28 01:44:12,015 | INFO     | intersect: 128501658956.43768
[2025-07-27 21:44:44] 2025-07-28 01:44:12,015 | INFO     | chi2: 0.07859938655771033
[2025-07-27 21:44:44] 2025-07-28 01:44:12,015 | INFO     | -- intersect: 128501658956.43768
[2025-07-27 21:44:44] 2025-07-28 01:44:12,016 | INFO     | current memory leak: -73.27 B/s (using 70 data points, chi2=0.08)
[2025-07-27 21:44:44] 2025-07-28 01:44:12,016 | INFO     | could have reported an average CPU frequency of 2056 MHz (6 samples)
[2025-07-27 21:44:44] 2025-07-28 01:44:12,016 | INFO     | ..............................
[2025-07-27 21:44:44] 2025-07-28 01:44:12,016 | INFO     | . Timing measurements:
[2025-07-27 21:44:44] 2025-07-28 01:44:12,016 | INFO     | . get job = 0 s
[2025-07-27 21:44:44] 2025-07-28 01:44:12,016 | INFO     | . initial setup = 2 s
[2025-07-27 21:44:44] 2025-07-28 01:44:12,016 | INFO     | . payload setup = 9 s
[2025-07-27 21:44:44] 2025-07-28 01:44:12,017 | INFO     | . stage-in = 0 s
[2025-07-27 21:44:44] 2025-07-28 01:44:12,017 | INFO     | . payload execution = 4694 s
[2025-07-27 21:44:44] 2025-07-28 01:44:12,017 | INFO     | . stage-out = 0 s
[2025-07-27 21:44:44] 2025-07-28 01:44:12,017 | INFO     | . log creation = 0 s
[2025-07-27 21:44:44] 2025-07-28 01:44:12,017 | INFO     | ..............................
[2025-07-27 21:44:44] 2025-07-28 01:44:12,102 | INFO     | 
[2025-07-27 21:44:44] 2025-07-28 01:44:12,102 | INFO     | job summary report
[2025-07-27 21:44:44] 2025-07-28 01:44:12,102 | INFO     | --------------------------------------------------
[2025-07-27 21:44:44] 2025-07-28 01:44:12,103 | INFO     | PanDA job id: 6747411489
[2025-07-27 21:44:44] 2025-07-28 01:44:12,103 | INFO     | task id: 45743349
[2025-07-27 21:44:44] 2025-07-28 01:44:12,103 | INFO     | errors: (none)
[2025-07-27 21:44:44] 2025-07-28 01:44:12,103 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 21:44:44] 2025-07-28 01:44:12,103 | INFO     | pilot state: finished 
[2025-07-27 21:44:44] 2025-07-28 01:44:12,103 | INFO     | transexitcode: 0
[2025-07-27 21:44:44] 2025-07-28 01:44:12,104 | INFO     | exeerrorcode: 0
[2025-07-27 21:44:44] 2025-07-28 01:44:12,104 | INFO     | exeerrordiag: 
[2025-07-27 21:44:44] 2025-07-28 01:44:12,104 | INFO     | exitcode: 0
[2025-07-27 21:44:44] 2025-07-28 01:44:12,104 | INFO     | exitmsg: OK
[2025-07-27 21:44:44] 2025-07-28 01:44:12,104 | INFO     | cpuconsumptiontime: 51300 s
[2025-07-27 21:44:44] 2025-07-28 01:44:12,104 | INFO     | nevents: 400
[2025-07-27 21:44:44] 2025-07-28 01:44:12,104 | INFO     | neventsw: 0
[2025-07-27 21:44:44] 2025-07-28 01:44:12,105 | INFO     | pid: 5534
[2025-07-27 21:44:44] 2025-07-28 01:44:12,105 | INFO     | pgrp: 5534
[2025-07-27 21:44:44] 2025-07-28 01:44:12,105 | INFO     | corecount: 12
[2025-07-27 21:44:44] 2025-07-28 01:44:12,105 | INFO     | event service: False
[2025-07-27 21:44:44] 2025-07-28 01:44:12,105 | INFO     | sizes: {0: 2397475, 5: 2397737, 11: 2397793, 4707: 2423993, 4708: 2433047, 4716: 2433185}
[2025-07-27 21:44:44] 2025-07-28 01:44:12,105 | INFO     | --------------------------------------------------
[2025-07-27 21:44:44] 2025-07-28 01:44:12,106 | INFO     | 
[2025-07-27 21:44:44] 2025-07-28 01:44:12,106 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 21:44:44] 2025-07-28 01:44:12,130 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 21:44:44] 2025-07-28 01:44:12,131 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 21:44:44] 2025-07-28 01:44:12,131 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 21:44:44] 2025-07-28 01:44:12,131 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 21:44:44] 2025-07-28 01:44:12,131 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 21:44:44] 2025-07-28 01:44:12,131 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 21:44:44] 2025-07-28 01:44:12,131 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 21:44:44] 2025-07-28 01:44:12,132 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 21:44:44] 2025-07-28 01:44:12,132 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 21:44:44] 2025-07-28 01:44:12,132 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 21:44:44] 2025-07-28 01:44:12,132 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 21:44:44] 2025-07-28 01:44:12,132 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 21:44:44] 2025-07-28 01:44:12,132 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 21:44:44] 2025-07-28 01:44:12,133 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 21:44:44] 2025-07-28 01:44:12,133 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 21:44:44] 2025-07-28 01:44:12,133 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 21:44:44] 2025-07-28 01:44:12,133 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 21:44:44] 2025-07-28 01:44:12,133 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 21:44:44] 2025-07-28 01:44:12,133 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 21:44:44] 2025-07-28 01:44:12,134 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 21:44:44] 2025-07-28 01:44:12,134 | INFO     | job 6747411489 has completed (purged errors)
[2025-07-27 21:44:44] 2025-07-28 01:44:12,134 | INFO     | overall cleanup function is called
[2025-07-27 21:44:44] 2025-07-28 01:44:13,142 | INFO     | --- collectZombieJob: --- 10, [5534]
[2025-07-27 21:44:44] 2025-07-28 01:44:13,142 | INFO     | zombie collector waiting for pid 5534
[2025-07-27 21:44:44] 2025-07-28 01:44:13,142 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 21:44:44] 2025-07-28 01:44:13,142 | INFO     | collected zombie processes
[2025-07-27 21:44:44] 2025-07-28 01:44:13,143 | INFO     | will attempt to kill all subprocesses of pid=5534
[2025-07-27 21:44:44] 2025-07-28 01:44:13,233 | INFO     | process IDs to be killed: [5534] (in reverse order)
[2025-07-27 21:44:44] 2025-07-28 01:44:13,284 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 21:44:44] 2025-07-28 01:44:13,284 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 21:44:44] 2025-07-28 01:44:13,287 | INFO     | did not find any defunct processes belonging to 5534
[2025-07-27 21:44:44] 2025-07-28 01:44:13,289 | INFO     | did not find any defunct processes belonging to 5534
[2025-07-27 21:44:44] 2025-07-28 01:44:13,289 | INFO     | ready for new job
[2025-07-27 21:44:44] 2025-07-28 01:44:13,290 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 21:44:44] 2025-07-28 01:44:13,291 | INFO     | ***************************************
[2025-07-27 21:44:44] 2025-07-28 01:44:13,291 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 21:44:44] 2025-07-28 01:44:13,291 | INFO     | ***************************************
[2025-07-27 21:44:44] 2025-07-28 01:44:13,291 | INFO     | 
[2025-07-27 21:44:44] 2025-07-28 01:44:13,291 | INFO     | architecture information:
[2025-07-27 21:44:44] 2025-07-28 01:44:13,292 | INFO     | executing command: cat /etc/os-release
[2025-07-27 21:44:44] 2025-07-28 01:44:13,307 | INFO     | cat /etc/os-release:
[2025-07-27 21:44:44] NAME="CentOS Linux"
[2025-07-27 21:44:44] VERSION="7 (Core)"
[2025-07-27 21:44:44] ID="centos"
[2025-07-27 21:44:44] ID_LIKE="rhel fedora"
[2025-07-27 21:44:44] VERSION_ID="7"
[2025-07-27 21:44:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 21:44:44] ANSI_COLOR="0;31"
[2025-07-27 21:44:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 21:44:44] HOME_URL="https://www.centos.org/"
[2025-07-27 21:44:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 21:44:44] 
[2025-07-27 21:44:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 21:44:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 21:44:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 21:44:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 21:44:44] 
[2025-07-27 21:44:44] 2025-07-28 01:44:13,307 | INFO     | ***************************************
[2025-07-27 21:44:44] 2025-07-28 01:44:13,810 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 21:44:44] 2025-07-28 01:44:13,827 | INFO     | sufficient remaining disk space (29361176576 B)
[2025-07-27 21:44:44] 2025-07-28 01:44:13,827 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 21:44:44] 2025-07-28 01:44:13,828 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 21:44:44] 2025-07-28 01:44:13,828 | INFO     | update_server=False
[2025-07-27 21:44:44] 2025-07-28 01:44:13,828 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 21:44:44] 2025-07-28 01:44:13,828 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:44:44] 2025-07-28 01:44:13,829 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:44:44] 2025-07-28 01:44:13,829 | INFO     | aborting loop
[2025-07-27 21:44:44] 2025-07-28 01:44:14,068 | INFO     | all job control threads have been joined
[2025-07-27 21:44:44] 2025-07-28 01:44:14,136 | INFO     | all data control threads have been joined
[2025-07-27 21:44:44] 2025-07-28 01:44:14,461 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 21:44:44] 2025-07-28 01:44:14,542 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 21:44:44] 2025-07-28 01:44:14,727 | INFO     | all payload control threads have been joined
[2025-07-27 21:44:44] 2025-07-28 01:44:14,833 | INFO     | [job] job monitor thread has finished
[2025-07-27 21:44:44] 2025-07-28 01:44:14,834 | INFO     | [job] retrieve thread has finished
[2025-07-27 21:44:44] 2025-07-28 01:44:14,834 | INFO     | [job] queue monitor thread has finished
[2025-07-27 21:44:44] 2025-07-28 01:44:15,067 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 21:44:44] 2025-07-28 01:44:15,068 | INFO     | [data] copytool_in thread has finished
[2025-07-27 21:44:44] 2025-07-28 01:44:15,074 | INFO     | [job] control thread has finished
[2025-07-27 21:44:44] 2025-07-28 01:44:15,141 | INFO     | [data] control thread has finished
[2025-07-27 21:44:44] 2025-07-28 01:44:15,216 | INFO     | [payload] validate_post thread has finished
[2025-07-27 21:44:44] 2025-07-28 01:44:15,304 | INFO     | [payload] failed_post thread has finished
[2025-07-27 21:44:44] 2025-07-28 01:44:15,733 | INFO     | [payload] control thread has finished
[2025-07-27 21:44:44] 2025-07-28 01:44:15,925 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 21:44:44] 2025-07-28 01:44:16,058 | INFO     | [job] validate thread has finished
[2025-07-27 21:44:44] 2025-07-28 01:44:16,063 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 21:44:44] 2025-07-28 01:44:16,465 | INFO     | [data] copytool_out thread has finished
[2025-07-27 21:44:44] 2025-07-28 01:44:18,548 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 21:44:44] 2025-07-28 01:44:24,149 | INFO     | job.realtimelogging is not enabled
[2025-07-27 21:44:44] 2025-07-28 01:44:25,155 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 21:44:44] 2025-07-28 01:44:25,587 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139758329485120)>', '<ExcThread(monitor, started 139757724083968)>']
[2025-07-27 21:44:44] 2025-07-28 01:44:30,595 | INFO     | all workflow threads have been joined
[2025-07-27 21:44:44] 2025-07-28 01:44:30,596 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 21:44:44] 2025-07-28 01:44:30,596 | INFO     | traces error code: 0
[2025-07-27 21:44:44] 2025-07-28 01:44:30,596 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 21:44:44] 2025-07-28 01:44:44,167 | INFO     | PID=31389 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 21:44:44] 2025-07-28 01:44:44,168 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 21:44:44] 2025-07-28 01:44:44,168 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 21:44:44] 2025-07-28 01:44:44,168 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 21:44:44] 2025-07-28 01:44:44,168 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 21:44:44] 2025-07-28 01:44:44,168 | INFO     | [monitor] control thread has ended
[2025-07-27 21:44:44] 2025-07-28 01:44:44,262 [wrapper] ==== pilot stdout END ====
[2025-07-27 21:44:44] 2025-07-28 01:44:44,266 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 21:44:44] 2025-07-28 01:44:44,269 [wrapper] pilotpid: 31389
[2025-07-27 21:44:44] 2025-07-28 01:44:44,273 [wrapper] Pilot exit status: 0
[2025-07-27 21:44:44] 2025-07-28 01:44:44,289 [wrapper] pandaids: 6747411489
[2025-07-27 21:44:44] 2025-07-28 01:44:44,326 [wrapper] cleanup supervisor_pilot 15874 31390
[2025-07-27 21:44:44] 2025-07-28 01:44:44,329 [wrapper] Test setup, not cleaning
[2025-07-27 21:44:44] 2025-07-28 01:44:44,333 [wrapper] apfmon messages muted
[2025-07-27 21:44:44] 2025-07-28 01:44:44,336 [wrapper] ==== wrapper stdout END ====
[2025-07-27 21:44:44] 2025-07-28 01:44:44,340 [wrapper] ==== wrapper stderr END ====
[2025-07-27 21:44:44]  *** Error codes and diagnostics ***
[2025-07-27 21:44:44]     "exeErrorCode": 0,
[2025-07-27 21:44:44]     "exeErrorDiag": "",
[2025-07-27 21:44:44]     "pilotErrorCode": 0,
[2025-07-27 21:44:44]     "pilotErrorDiag": "",
[2025-07-27 21:44:44]  *** Listing of results directory ***
[2025-07-27 21:44:44] total 422808
[2025-07-27 21:44:44] -rw-r--r-- 1 boincer umatlas    530466 Jul 27 09:04 pilot3.tar.gz
[2025-07-27 21:44:44] -rw-r--r-- 1 boincer umatlas      5112 Jul 27 09:05 queuedata.json
[2025-07-27 21:44:44] -rwx------ 1 boincer umatlas     36292 Jul 27 09:06 runpilot2-wrapper.sh
[2025-07-27 21:44:44] -rw-r--r-- 1 boincer umatlas       100 Jul 27 20:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 21:44:44] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 20:25 run_atlas
[2025-07-27 21:44:44] -rw-r--r-- 1 boincer umatlas       105 Jul 27 20:25 job.xml
[2025-07-27 21:44:44] -rw-r--r-- 2 boincer umatlas 228706552 Jul 27 20:25 EVNT.45743347._002699.pool.root.1
[2025-07-27 21:44:44] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 20:25 start_atlas.sh
[2025-07-27 21:44:44] drwxrwx--x 2 boincer umatlas      4096 Jul 27 20:25 shared
[2025-07-27 21:44:44] -rw-r--r-- 2 boincer umatlas    542893 Jul 27 20:25 input.tar.gz
[2025-07-27 21:44:44] -rw-r--r-- 1 boincer umatlas         0 Jul 27 20:25 boinc_lockfile
[2025-07-27 21:44:44] -rw-r--r-- 1 boincer umatlas      2563 Jul 27 20:25 pandaJob.out
[2025-07-27 21:44:44] -rw------- 1 boincer umatlas    980125 Jul 27 20:25 agis_schedconf.cvmfs.json
[2025-07-27 21:44:44] -rw------- 1 boincer umatlas   1593052 Jul 27 20:25 agis_ddmendpoints.agis.ALL.json
[2025-07-27 21:44:44] drwx------ 4 boincer umatlas      4096 Jul 27 20:25 pilot3
[2025-07-27 21:44:44] -rw-r--r-- 1 boincer umatlas      5867 Jul 27 21:39 init_data.xml
[2025-07-27 21:44:44] -rw------- 1 boincer umatlas 198744378 Jul 27 21:43 HITS.45743349._048703.pool.root.1
[2025-07-27 21:44:44] -rw-r--r-- 1 boincer umatlas       529 Jul 27 21:43 boinc_task_state.xml
[2025-07-27 21:44:44] -rw------- 1 boincer umatlas      1048 Jul 27 21:43 memory_monitor_summary.json
[2025-07-27 21:44:44] -rw------- 1 boincer umatlas    363081 Jul 27 21:44 log.45743349._048703.job.log.tgz.1
[2025-07-27 21:44:44] -rw------- 1 boincer umatlas      7856 Jul 27 21:44 heartbeat.json
[2025-07-27 21:44:44] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 21:44 boinc_mmap_file
[2025-07-27 21:44:44] -rw-r--r-- 1 boincer umatlas        27 Jul 27 21:44 wrapper_checkpoint.txt
[2025-07-27 21:44:44] -rw------- 1 boincer umatlas        95 Jul 27 21:44 pilot_heartbeat.json
[2025-07-27 21:44:44] -rw------- 1 boincer umatlas       745 Jul 27 21:44 pilotlog.txt
[2025-07-27 21:44:44] -rw------- 1 boincer umatlas    451022 Jul 27 21:44 log.45743349._048703.job.log.1
[2025-07-27 21:44:44] -rw------- 1 boincer umatlas       357 Jul 27 21:44 output.list
[2025-07-27 21:44:44] -rw-r--r-- 1 boincer umatlas       620 Jul 27 21:44 runtime_log
[2025-07-27 21:44:44] -rw------- 1 boincer umatlas    829440 Jul 27 21:44 result.tar.gz
[2025-07-27 21:44:44] -rw------- 1 boincer umatlas       658 Jul 27 21:44 zJGKDmWGG07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmdJVLDmWIfgxn.diag
[2025-07-27 21:44:44] -rw-r--r-- 1 boincer umatlas      8657 Jul 27 21:44 runtime_log.err
[2025-07-27 21:44:44] -rw-r--r-- 1 boincer umatlas     21614 Jul 27 21:44 stderr.txt
[2025-07-27 21:44:44] HITS file was successfully produced:
[2025-07-27 21:44:44] -rw------- 1 boincer umatlas 198744378 Jul 27 21:43 shared/HITS.pool.root.1
[2025-07-27 21:44:44]  *** Contents of shared directory: ***
[2025-07-27 21:44:44] total 418804
[2025-07-27 21:44:44] -rw-r--r-- 2 boincer umatlas 228706552 Jul 27 20:25 ATLAS.root_0
[2025-07-27 21:44:44] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 20:25 start_atlas.sh
[2025-07-27 21:44:44] -rw-r--r-- 2 boincer umatlas    542893 Jul 27 20:25 input.tar.gz
[2025-07-27 21:44:44] -rw------- 1 boincer umatlas 198744378 Jul 27 21:43 HITS.pool.root.1
[2025-07-27 21:44:44] -rw------- 1 boincer umatlas    829440 Jul 27 21:44 result.tar.gz
21:44:46 (27777): run_atlas exited; CPU time 51275.061246
21:44:46 (27777): called boinc_finish(0)

</stderr_txt>
]]>

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