Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:12:48 (3552139): wrapper (7.7.26015): starting
20:12:48 (3552139): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 20:12:48] Arguments: --nthreads 8
[2025-07-27 20:12:48] Threads: 8
[2025-07-27 20:12:48] Checking for CVMFS
[2025-07-27 20:12:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 20:12:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 20:12:49] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 20:12:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 20:12:49] 2.13.1.0 672044 14862 157256 148828 2 196 24582898 40960001 9712 16776704 0 48113682 99.887 26274472 43592 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 20:12:49] CVMFS is ok
[2025-07-27 20:12:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 20:12:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 20:12:49] Further information can be found at the LHC@home message board.
[2025-07-27 20:12:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 20:12:49] Checking for apptainer binary...
[2025-07-27 20:12:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 20:12:49] Running /usr/bin/apptainer --version
[2025-07-27 20:12:49] apptainer version 1.4.1-1.el9
[2025-07-27 20:12:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 20:12:49] c-212-3.aglt2.org
[2025-07-27 20:12:49] apptainer works
[2025-07-27 20:12:49] Set ATHENA_PROC_NUMBER=8
[2025-07-27 20:12:49] Set ATHENA_CORE_NUMBER=8
[2025-07-27 20:12:49] Starting ATLAS job with PandaID=6747525692
[2025-07-27 20:12:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 21:37:11]  *** The last 200 lines of the pilot log: ***
[2025-07-27 21:37:11]  mtime=0
[2025-07-27 21:37:11]  protocol_id=None
[2025-07-27 21:37:11]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 21:37:11]  replicas=None
[2025-07-27 21:37:11]  scope=mc23_13p6TeV
[2025-07-27 21:37:11]  status=None
[2025-07-27 21:37:11]  status_code=0
[2025-07-27 21:37:11]  storage_token=
[2025-07-27 21:37:11]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6747525692/log.45743349._052239.job.log.tgz.1
[2025-07-27 21:37:11]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9c/51/log.45743349._052239.job.log.tgz.1
[2025-07-27 21:37:11]  workdir=None
[2025-07-27 21:37:11] ]
[2025-07-27 21:37:11] 2025-07-28 01:36:30,898 | INFO     | transferring file log.45743349._052239.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6747525692/log.45743349._052239.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 21:37:11] 2025-07-28 01:36:30,898 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6747525692/log.45743349._052239.job.log.tgz.1 /tmp/boinchome/slots/2/log.45743349._052239.job
[2025-07-27 21:37:11] 2025-07-28 01:36:30,918 | INFO     | adding to output.list: log.45743349._052239.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9c/51/log.45743349._052239.job.log.tg
[2025-07-27 21:37:11] 2025-07-28 01:36:30,919 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 21:37:11] 2025-07-28 01:36:30,919 | INFO     | summary of transferred files:
[2025-07-27 21:37:11] 2025-07-28 01:36:30,919 | INFO     |  -- lfn=log.45743349._052239.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 21:37:11] 2025-07-28 01:36:30,919 | INFO     | stage-out finished correctly
[2025-07-27 21:37:11] 2025-07-28 01:36:31,631 | INFO     | monitor loop #367: job 0:6747525692 is in state 'finished'
[2025-07-27 21:37:11] 2025-07-28 01:36:31,631 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:37:11] 2025-07-28 01:36:33,279 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 21:37:11] 2025-07-28 01:36:33,354 | INFO     | job 6747525692 has state=finished
[2025-07-27 21:37:11] 2025-07-28 01:36:33,354 | INFO     | preparing for final server update for job 6747525692 in state='finished'
[2025-07-27 21:37:11] 2025-07-28 01:36:33,355 | INFO     | this job has now completed (state=finished)
[2025-07-27 21:37:11] 2025-07-28 01:36:33,355 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 21:37:11] 2025-07-28 01:36:33,355 | INFO     | log transfer has been attempted: DONE
[2025-07-27 21:37:11] 2025-07-28 01:36:33,355 | INFO     | job 6747525692 has finished - writing final server update
[2025-07-27 21:37:11] 2025-07-28 01:36:33,355 | INFO     | total number of processed events: 400 (read)
[2025-07-27 21:37:11] 2025-07-28 01:36:33,356 | INFO     | executing command: lscpu
[2025-07-27 21:37:11] 2025-07-28 01:36:33,417 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 21:37:11] 2025-07-28 01:36:34,134 | INFO     | monitor loop #368: job 0:6747525692 is in state 'finished'
[2025-07-27 21:37:11] 2025-07-28 01:36:34,134 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:37:11] 2025-07-28 01:36:36,639 | INFO     | monitor loop #369: job 0:6747525692 is in state 'finished'
[2025-07-27 21:37:11] 2025-07-28 01:36:36,639 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:37:11] 2025-07-28 01:36:37,853 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 21:37:11] 2025-07-28 01:36:37,858 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3308.196760416666
[2025-07-27 21:37:11] 2025-07-28 01:36:37,868 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6747525692/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 21:37:11] 2025-07-28 01:36:37,869 | INFO     | extracted standard info from prmon json
[2025-07-27 21:37:11] 2025-07-28 01:36:37,869 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 21:37:11] 2025-07-28 01:36:37,869 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 21:37:11] 2025-07-28 01:36:37,869 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 21:37:11] 2025-07-28 01:36:37,869 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 21:37:11] 2025-07-28 01:36:37,870 | INFO     | fitting pss+swap vs Time
[2025-07-27 21:37:11] 2025-07-28 01:36:37,871 | INFO     | sum of square deviations: 130793150.0
[2025-07-27 21:37:11] 2025-07-28 01:36:37,871 | INFO     | sum of deviations: 1832572613.9999998
[2025-07-27 21:37:11] 2025-07-28 01:36:37,871 | INFO     | mean x: 1753664171.0
[2025-07-27 21:37:11] 2025-07-28 01:36:37,871 | INFO     | mean y: 2508836.6266666665
[2025-07-27 21:37:11] 2025-07-28 01:36:37,871 | INFO     | -- intersect: -24568479276.494034
[2025-07-27 21:37:11] 2025-07-28 01:36:37,871 | INFO     | intersect: -24568479276.494034
[2025-07-27 21:37:11] 2025-07-28 01:36:37,871 | INFO     | chi2: 0.0009214907287880419
[2025-07-27 21:37:11] 2025-07-28 01:36:37,871 | INFO     | -- intersect: -24568479276.494034
[2025-07-27 21:37:11] 2025-07-28 01:36:37,871 | INFO     | current memory leak: 14.01 B/s (using 75 data points, chi2=0.00)
[2025-07-27 21:37:11] 2025-07-28 01:36:37,871 | INFO     | could have reported an average CPU frequency of 3297 MHz (6 samples)
[2025-07-27 21:37:11] 2025-07-28 01:36:37,871 | INFO     | ..............................
[2025-07-27 21:37:11] 2025-07-28 01:36:37,871 | INFO     | . Timing measurements:
[2025-07-27 21:37:11] 2025-07-28 01:36:37,872 | INFO     | . get job = 0 s
[2025-07-27 21:37:11] 2025-07-28 01:36:37,872 | INFO     | . initial setup = 2 s
[2025-07-27 21:37:11] 2025-07-28 01:36:37,872 | INFO     | . payload setup = 6 s
[2025-07-27 21:37:11] 2025-07-28 01:36:37,872 | INFO     | . stage-in = 0 s
[2025-07-27 21:37:11] 2025-07-28 01:36:37,872 | INFO     | . payload execution = 4983 s
[2025-07-27 21:37:11] 2025-07-28 01:36:37,872 | INFO     | . stage-out = 0 s
[2025-07-27 21:37:11] 2025-07-28 01:36:37,872 | INFO     | . log creation = 0 s
[2025-07-27 21:37:11] 2025-07-28 01:36:37,872 | INFO     | ..............................
[2025-07-27 21:37:11] 2025-07-28 01:36:37,924 | INFO     | 
[2025-07-27 21:37:11] 2025-07-28 01:36:37,924 | INFO     | job summary report
[2025-07-27 21:37:11] 2025-07-28 01:36:37,924 | INFO     | --------------------------------------------------
[2025-07-27 21:37:11] 2025-07-28 01:36:37,924 | INFO     | PanDA job id: 6747525692
[2025-07-27 21:37:11] 2025-07-28 01:36:37,925 | INFO     | task id: 45743349
[2025-07-27 21:37:11] 2025-07-28 01:36:37,925 | INFO     | errors: (none)
[2025-07-27 21:37:11] 2025-07-28 01:36:37,925 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 21:37:11] 2025-07-28 01:36:37,925 | INFO     | pilot state: finished 
[2025-07-27 21:37:11] 2025-07-28 01:36:37,925 | INFO     | transexitcode: 0
[2025-07-27 21:37:11] 2025-07-28 01:36:37,925 | INFO     | exeerrorcode: 0
[2025-07-27 21:37:11] 2025-07-28 01:36:37,925 | INFO     | exeerrordiag: 
[2025-07-27 21:37:11] 2025-07-28 01:36:37,925 | INFO     | exitcode: 0
[2025-07-27 21:37:11] 2025-07-28 01:36:37,925 | INFO     | exitmsg: OK
[2025-07-27 21:37:11] 2025-07-28 01:36:37,925 | INFO     | cpuconsumptiontime: 35362 s
[2025-07-27 21:37:11] 2025-07-28 01:36:37,925 | INFO     | nevents: 400
[2025-07-27 21:37:11] 2025-07-28 01:36:37,925 | INFO     | neventsw: 0
[2025-07-27 21:37:11] 2025-07-28 01:36:37,925 | INFO     | pid: 3566943
[2025-07-27 21:37:11] 2025-07-28 01:36:37,925 | INFO     | pgrp: 3566943
[2025-07-27 21:37:11] 2025-07-28 01:36:37,925 | INFO     | corecount: 8
[2025-07-27 21:37:11] 2025-07-28 01:36:37,925 | INFO     | event service: False
[2025-07-27 21:37:11] 2025-07-28 01:36:37,925 | INFO     | sizes: {0: 2397475, 5: 2397737, 11: 2397793, 4993: 2424133, 4994: 2433131, 4996: 2433187, 5001: 2433509}
[2025-07-27 21:37:11] 2025-07-28 01:36:37,925 | INFO     | --------------------------------------------------
[2025-07-27 21:37:11] 2025-07-28 01:36:37,925 | INFO     | 
[2025-07-27 21:37:11] 2025-07-28 01:36:37,925 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-27 21:37:11] 2025-07-28 01:36:37,940 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 21:37:11] 2025-07-28 01:36:37,941 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 21:37:11] 2025-07-28 01:36:37,941 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 21:37:11] 2025-07-28 01:36:37,941 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 21:37:11] 2025-07-28 01:36:37,941 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 21:37:11] 2025-07-28 01:36:37,941 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 21:37:11] 2025-07-28 01:36:37,941 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 21:37:11] 2025-07-28 01:36:37,941 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 21:37:11] 2025-07-28 01:36:37,941 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 21:37:11] 2025-07-28 01:36:37,941 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 21:37:11] 2025-07-28 01:36:37,941 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 21:37:11] 2025-07-28 01:36:37,941 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 21:37:11] 2025-07-28 01:36:37,941 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 21:37:11] 2025-07-28 01:36:37,941 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 21:37:11] 2025-07-28 01:36:37,941 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 21:37:11] 2025-07-28 01:36:37,941 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 21:37:11] 2025-07-28 01:36:37,941 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 21:37:11] 2025-07-28 01:36:37,941 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 21:37:11] 2025-07-28 01:36:37,941 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 21:37:11] 2025-07-28 01:36:37,941 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 21:37:11] 2025-07-28 01:36:37,941 | INFO     | job 6747525692 has completed (purged errors)
[2025-07-27 21:37:11] 2025-07-28 01:36:37,942 | INFO     | overall cleanup function is called
[2025-07-27 21:37:11] 2025-07-28 01:36:38,949 | INFO     | --- collectZombieJob: --- 10, [3566943]
[2025-07-27 21:37:11] 2025-07-28 01:36:38,949 | INFO     | zombie collector waiting for pid 3566943
[2025-07-27 21:37:11] 2025-07-28 01:36:38,949 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 21:37:11] 2025-07-28 01:36:38,949 | INFO     | collected zombie processes
[2025-07-27 21:37:11] 2025-07-28 01:36:38,949 | INFO     | will attempt to kill all subprocesses of pid=3566943
[2025-07-27 21:37:11] 2025-07-28 01:36:39,318 | INFO     | process IDs to be killed: [3566943] (in reverse order)
[2025-07-27 21:37:11] 2025-07-28 01:36:39,441 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 21:37:11] 2025-07-28 01:36:39,442 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 21:37:11] 2025-07-28 01:36:39,457 | INFO     | did not find any defunct processes belonging to 3566943
[2025-07-27 21:37:11] 2025-07-28 01:36:39,470 | INFO     | did not find any defunct processes belonging to 3566943
[2025-07-27 21:37:11] 2025-07-28 01:36:39,470 | INFO     | ready for new job
[2025-07-27 21:37:11] 2025-07-28 01:36:39,470 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 21:37:11] 2025-07-28 01:36:39,472 | INFO     | ***************************************
[2025-07-27 21:37:11] 2025-07-28 01:36:39,472 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 21:37:11] 2025-07-28 01:36:39,472 | INFO     | ***************************************
[2025-07-27 21:37:11] 2025-07-28 01:36:39,472 | INFO     | 
[2025-07-27 21:37:11] 2025-07-28 01:36:39,477 | INFO     | architecture information:
[2025-07-27 21:37:11] 2025-07-28 01:36:39,477 | INFO     | executing command: cat /etc/os-release
[2025-07-27 21:37:11] 2025-07-28 01:36:39,493 | INFO     | cat /etc/os-release:
[2025-07-27 21:37:11] NAME="CentOS Linux"
[2025-07-27 21:37:11] VERSION="7 (Core)"
[2025-07-27 21:37:11] ID="centos"
[2025-07-27 21:37:11] ID_LIKE="rhel fedora"
[2025-07-27 21:37:11] VERSION_ID="7"
[2025-07-27 21:37:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 21:37:11] ANSI_COLOR="0;31"
[2025-07-27 21:37:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 21:37:11] HOME_URL="https://www.centos.org/"
[2025-07-27 21:37:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 21:37:11] 
[2025-07-27 21:37:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 21:37:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 21:37:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 21:37:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 21:37:11] 
[2025-07-27 21:37:11] 2025-07-28 01:36:39,493 | INFO     | ***************************************
[2025-07-27 21:37:11] 2025-07-28 01:36:39,995 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-27 21:37:11] 2025-07-28 01:36:40,021 | INFO     | sufficient remaining disk space (124967190528 B)
[2025-07-27 21:37:11] 2025-07-28 01:36:40,022 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 21:37:11] 2025-07-28 01:36:40,022 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 21:37:11] 2025-07-28 01:36:40,022 | INFO     | update_server=False
[2025-07-27 21:37:11] 2025-07-28 01:36:40,022 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 21:37:11] 2025-07-28 01:36:40,023 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 21:37:11] 2025-07-28 01:36:40,147 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:37:11] 2025-07-28 01:36:40,147 | INFO     | aborting loop
[2025-07-27 21:37:11] 2025-07-28 01:36:40,289 | INFO     | all data control threads have been joined
[2025-07-27 21:37:11] 2025-07-28 01:36:40,714 | INFO     | all job control threads have been joined
[2025-07-27 21:37:11] 2025-07-28 01:36:41,027 | INFO     | [job] retrieve thread has finished
[2025-07-27 21:37:11] 2025-07-28 01:36:41,152 | INFO     | [job] job monitor thread has finished
[2025-07-27 21:37:11] 2025-07-28 01:36:41,168 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 21:37:11] 2025-07-28 01:36:41,294 | INFO     | [data] control thread has finished
[2025-07-27 21:37:11] 2025-07-28 01:36:41,313 | INFO     | all payload control threads have been joined
[2025-07-27 21:37:11] 2025-07-28 01:36:41,340 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 21:37:11] 2025-07-28 01:36:41,505 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 21:37:11] 2025-07-28 01:36:41,511 | INFO     | [payload] failed_post thread has finished
[2025-07-27 21:37:11] 2025-07-28 01:36:41,720 | INFO     | [job] control thread has finished
[2025-07-27 21:37:11] 2025-07-28 01:36:41,752 | INFO     | [data] copytool_in thread has finished
[2025-07-27 21:37:11] 2025-07-28 01:36:42,167 | INFO     | [job] validate thread has finished
[2025-07-27 21:37:11] 2025-07-28 01:36:42,318 | INFO     | [payload] control thread has finished
[2025-07-27 21:37:11] 2025-07-28 01:36:42,369 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 21:37:11] 2025-07-28 01:36:42,464 | INFO     | [payload] validate_post thread has finished
[2025-07-27 21:37:11] 2025-07-28 01:36:42,936 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:37:11] 2025-07-28 01:36:43,510 | INFO     | [data] copytool_out thread has finished
[2025-07-27 21:37:11] 2025-07-28 01:36:43,942 | INFO     | [job] queue monitor thread has finished
[2025-07-27 21:37:11] 2025-07-28 01:36:44,031 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 21:37:11] 2025-07-28 01:36:51,012 | INFO     | job.realtimelogging is not enabled
[2025-07-27 21:37:11] 2025-07-28 01:36:52,018 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 21:37:11] 2025-07-28 01:36:52,673 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140045416781632)>', '<ExcThread(monitor, started 140044773873408)>']
[2025-07-27 21:37:11] 2025-07-28 01:36:57,698 | INFO     | all workflow threads have been joined
[2025-07-27 21:37:11] 2025-07-28 01:36:57,698 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 21:37:11] 2025-07-28 01:36:57,698 | INFO     | traces error code: 0
[2025-07-27 21:37:11] 2025-07-28 01:36:57,698 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 21:37:11] 2025-07-28 01:37:10,737 | INFO     | PID=3560172 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 21:37:11] 2025-07-28 01:37:10,737 | INFO     | .. there are 13 such processes running
[2025-07-27 21:37:11] 2025-07-28 01:37:10,738 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 21:37:11] 2025-07-28 01:37:10,738 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 21:37:11] 2025-07-28 01:37:10,738 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 21:37:11] 2025-07-28 01:37:10,738 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 21:37:11] 2025-07-28 01:37:10,738 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 21:37:11] 2025-07-28 01:37:10,738 | INFO     | [monitor] control thread has ended
[2025-07-27 21:37:11] 2025-07-28 01:37:10,826 [wrapper] ==== pilot stdout END ====
[2025-07-27 21:37:11] 2025-07-28 01:37:10,833 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 21:37:11] 2025-07-28 01:37:10,837 [wrapper] pilotpid: 3560172
[2025-07-27 21:37:11] 2025-07-28 01:37:10,840 [wrapper] Pilot exit status: 0
[2025-07-27 21:37:11] 2025-07-28 01:37:10,855 [wrapper] pandaids: 6747525692
[2025-07-27 21:37:11] 2025-07-28 01:37:10,936 [wrapper] cleanup supervisor_pilot 3874593 3560173
[2025-07-27 21:37:11] 2025-07-28 01:37:10,941 [wrapper] Test setup, not cleaning
[2025-07-27 21:37:11] 2025-07-28 01:37:10,946 [wrapper] apfmon messages muted
[2025-07-27 21:37:11] 2025-07-28 01:37:10,950 [wrapper] ==== wrapper stdout END ====
[2025-07-27 21:37:11] 2025-07-28 01:37:10,953 [wrapper] ==== wrapper stderr END ====
[2025-07-27 21:37:11]  *** Error codes and diagnostics ***
[2025-07-27 21:37:11]     "exeErrorCode": 0,
[2025-07-27 21:37:11]     "exeErrorDiag": "",
[2025-07-27 21:37:11]     "pilotErrorCode": 0,
[2025-07-27 21:37:11]     "pilotErrorDiag": "",
[2025-07-27 21:37:11]  *** Listing of results directory ***
[2025-07-27 21:37:11] total 354508
[2025-07-27 21:37:11] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 12:02 pilot3.tar.gz
[2025-07-27 21:37:11] -rwx------. 1 boincer umatlas     36292 Jul 27 12:15 runpilot2-wrapper.sh
[2025-07-27 21:37:11] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 12:15 queuedata.json
[2025-07-27 21:37:11] -rw-r--r--. 1 boincer umatlas       100 Jul 27 20:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 21:37:11] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 20:12 run_atlas
[2025-07-27 21:37:11] -rw-r--r--. 1 boincer umatlas       105 Jul 27 20:12 job.xml
[2025-07-27 21:37:11] -rw-r--r--. 2 boincer umatlas 147048096 Jul 27 20:12 EVNT.45743347._002876.pool.root.1
[2025-07-27 21:37:11] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 20:12 start_atlas.sh
[2025-07-27 21:37:11] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 20:12 shared
[2025-07-27 21:37:11] -rw-r--r--. 2 boincer umatlas    542896 Jul 27 20:12 input.tar.gz
[2025-07-27 21:37:11] -rw-r--r--. 1 boincer umatlas         0 Jul 27 20:12 boinc_lockfile
[2025-07-27 21:37:11] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 20:12 pandaJob.out
[2025-07-27 21:37:11] -rw-------. 1 boincer umatlas    980125 Jul 27 20:12 agis_schedconf.cvmfs.json
[2025-07-27 21:37:11] -rw-------. 1 boincer umatlas   1593052 Jul 27 20:12 agis_ddmendpoints.agis.ALL.json
[2025-07-27 21:37:11] drwx------. 4 boincer umatlas      4096 Jul 27 20:13 pilot3
[2025-07-27 21:37:11] -rw-------. 1 boincer umatlas 210496013 Jul 27 21:36 HITS.45743349._052239.pool.root.1
[2025-07-27 21:37:11] -rw-r--r--. 1 boincer umatlas       530 Jul 27 21:36 boinc_task_state.xml
[2025-07-27 21:37:11] -rw-------. 1 boincer umatlas      1026 Jul 27 21:36 memory_monitor_summary.json
[2025-07-27 21:37:11] -rw-------. 1 boincer umatlas    308504 Jul 27 21:36 log.45743349._052239.job.log.tgz.1
[2025-07-27 21:37:11] -rw-------. 1 boincer umatlas      7764 Jul 27 21:36 heartbeat.json
[2025-07-27 21:37:11] -rw-r--r--. 1 boincer umatlas      6946 Jul 27 21:37 init_data.xml
[2025-07-27 21:37:11] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 21:37 boinc_mmap_file
[2025-07-27 21:37:11] -rw-r--r--. 1 boincer umatlas        27 Jul 27 21:37 wrapper_checkpoint.txt
[2025-07-27 21:37:11] -rw-------. 1 boincer umatlas        95 Jul 27 21:37 pilot_heartbeat.json
[2025-07-27 21:37:11] -rw-------. 1 boincer umatlas       893 Jul 27 21:37 pilotlog.txt
[2025-07-27 21:37:11] -rw-------. 1 boincer umatlas    489451 Jul 27 21:37 log.45743349._052239.job.log.1
[2025-07-27 21:37:11] -rw-------. 1 boincer umatlas       357 Jul 27 21:37 output.list
[2025-07-27 21:37:11] -rw-r--r--. 1 boincer umatlas       620 Jul 27 21:37 runtime_log
[2025-07-27 21:37:11] -rw-------. 1 boincer umatlas    819200 Jul 27 21:37 result.tar.gz
[2025-07-27 21:37:11] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 21:37 runtime_log.err
[2025-07-27 21:37:11] -rw-------. 1 boincer umatlas       651 Jul 27 21:37 glJMDmaDJ07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmpoVLDm6UAB1n.diag
[2025-07-27 21:37:11] -rw-r--r--. 1 boincer umatlas     21694 Jul 27 21:37 stderr.txt
[2025-07-27 21:37:11] HITS file was successfully produced:
[2025-07-27 21:37:11] -rw-------. 1 boincer umatlas 210496013 Jul 27 21:36 shared/HITS.pool.root.1
[2025-07-27 21:37:11]  *** Contents of shared directory: ***
[2025-07-27 21:37:11] total 350520
[2025-07-27 21:37:11] -rw-r--r--. 2 boincer umatlas 147048096 Jul 27 20:12 ATLAS.root_0
[2025-07-27 21:37:11] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 20:12 start_atlas.sh
[2025-07-27 21:37:11] -rw-r--r--. 2 boincer umatlas    542896 Jul 27 20:12 input.tar.gz
[2025-07-27 21:37:11] -rw-------. 1 boincer umatlas 210496013 Jul 27 21:36 HITS.pool.root.1
[2025-07-27 21:37:11] -rw-------. 1 boincer umatlas    819200 Jul 27 21:37 result.tar.gz
21:37:12 (3552139): run_atlas exited; CPU time 35486.127366
21:37:12 (3552139): called boinc_finish(0)

</stderr_txt>
]]>

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