Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:38:50 (2099087): wrapper (7.7.26015): starting
21:38:50 (2099087): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 21:38:50] Arguments: --nthreads 12
[2025-07-27 21:38:50] Threads: 12
[2025-07-27 21:38:50] Checking for CVMFS
[2025-07-27 21:38:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 21:38:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 21:38:50] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 21:38:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 21:38:50] 2.13.0.0 2408171 19156 309760 148830 1 110 29593411 32935937 10119 16776704 0 39291052 99.683 60427874 29719 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 21:38:50] CVMFS is ok
[2025-07-27 21:38:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 21:38:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 21:38:50] Further information can be found at the LHC@home message board.
[2025-07-27 21:38:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 21:38:50] Checking for apptainer binary...
[2025-07-27 21:38:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 21:38:50] Running /usr/bin/apptainer --version
[2025-07-27 21:38:50] apptainer version 1.4.1-1.el9
[2025-07-27 21:38:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 21:38:51] c6-5-7-3.aglt2.org
[2025-07-27 21:38:51] apptainer works
[2025-07-27 21:38:51] Set ATHENA_PROC_NUMBER=12
[2025-07-27 21:38:51] Set ATHENA_CORE_NUMBER=12
[2025-07-27 21:38:51] Starting ATLAS job with PandaID=6747599732
[2025-07-27 21:38:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 22:51:46]  *** The last 200 lines of the pilot log: ***
[2025-07-27 22:51:46]  protocol_id=None
[2025-07-27 22:51:46]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 22:51:46]  replicas=None
[2025-07-27 22:51:46]  scope=mc23_13p6TeV
[2025-07-27 22:51:46]  status=None
[2025-07-27 22:51:46]  status_code=0
[2025-07-27 22:51:46]  storage_token=
[2025-07-27 22:51:46]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747599732/log.45743349._054115.job.log.tgz.1
[2025-07-27 22:51:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a9/47/log.45743349._054115.job.log.tgz.1
[2025-07-27 22:51:46]  workdir=None
[2025-07-27 22:51:46] ]
[2025-07-27 22:51:46] 2025-07-28 02:51:07,649 | INFO     | transferring file log.45743349._054115.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747599732/log.45743349._054115.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 22:51:46] 2025-07-28 02:51:07,650 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747599732/log.45743349._054115.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._054115.job
[2025-07-27 22:51:46] 2025-07-28 02:51:07,671 | INFO     | adding to output.list: log.45743349._054115.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a9/47/log.45743349._054115.job.log.tg
[2025-07-27 22:51:46] 2025-07-28 02:51:07,672 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 22:51:46] 2025-07-28 02:51:07,673 | INFO     | summary of transferred files:
[2025-07-27 22:51:46] 2025-07-28 02:51:07,673 | INFO     |  -- lfn=log.45743349._054115.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 22:51:46] 2025-07-28 02:51:07,673 | INFO     | stage-out finished correctly
[2025-07-27 22:51:46] 2025-07-28 02:51:08,752 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 22:51:46] 2025-07-28 02:51:08,850 | INFO     | job 6747599732 has state=finished
[2025-07-27 22:51:46] 2025-07-28 02:51:08,850 | INFO     | preparing for final server update for job 6747599732 in state='finished'
[2025-07-27 22:51:46] 2025-07-28 02:51:08,851 | INFO     | this job has now completed (state=finished)
[2025-07-27 22:51:46] 2025-07-28 02:51:08,851 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 22:51:46] 2025-07-28 02:51:08,851 | INFO     | log transfer has been attempted: DONE
[2025-07-27 22:51:46] 2025-07-28 02:51:08,851 | INFO     | job 6747599732 has finished - writing final server update
[2025-07-27 22:51:46] 2025-07-28 02:51:08,851 | INFO     | total number of processed events: 400 (read)
[2025-07-27 22:51:46] 2025-07-28 02:51:08,853 | INFO     | executing command: lscpu
[2025-07-27 22:51:46] 2025-07-28 02:51:08,907 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 22:51:46] 2025-07-28 02:51:09,300 | WARNING  | process 2111147 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 22:51:46] 2025-07-28 02:51:09,301 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747599732/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 22:51:46] 2025-07-28 02:51:09,549 | INFO     | number of running child processes to parent process 2111147: 1
[2025-07-27 22:51:46] 2025-07-28 02:51:09,550 | INFO     | maximum number of monitored processes: 6
[2025-07-27 22:51:46] 2025-07-28 02:51:12,052 | INFO     | monitor loop #319: job 0:6747599732 is in state 'finished'
[2025-07-27 22:51:46] 2025-07-28 02:51:12,052 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 22:51:46] 2025-07-28 02:51:13,526 | INFO     | PID=2103472 has CPU usage=11.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-27 22:51:46] 2025-07-28 02:51:13,526 | INFO     | .. there are 13 such processes running
[2025-07-27 22:51:46] 2025-07-28 02:51:13,690 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 22:51:46] 2025-07-28 02:51:13,712 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2846.311017857142
[2025-07-27 22:51:46] 2025-07-28 02:51:13,723 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747599732/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 22:51:46] 2025-07-28 02:51:13,723 | INFO     | extracted standard info from prmon json
[2025-07-27 22:51:46] 2025-07-28 02:51:13,724 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 22:51:46] 2025-07-28 02:51:13,724 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 22:51:46] 2025-07-28 02:51:13,724 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 22:51:46] 2025-07-28 02:51:13,724 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 22:51:46] 2025-07-28 02:51:13,726 | INFO     | fitting pss+swap vs Time
[2025-07-27 22:51:46] 2025-07-28 02:51:13,727 | INFO     | sum of square deviations: 81266640.0
[2025-07-27 22:51:46] 2025-07-28 02:51:13,727 | INFO     | sum of deviations: -9397420453.0
[2025-07-27 22:51:46] 2025-07-28 02:51:13,727 | INFO     | mean x: 1753668998.5
[2025-07-27 22:51:46] 2025-07-28 02:51:13,727 | INFO     | mean y: 2463521.21875
[2025-07-27 22:51:46] 2025-07-28 02:51:13,727 | INFO     | -- intersect: 202791269780.41595
[2025-07-27 22:51:46] 2025-07-28 02:51:13,727 | INFO     | intersect: 202791269780.41595
[2025-07-27 22:51:46] 2025-07-28 02:51:13,728 | INFO     | chi2: 0.162245261343587
[2025-07-27 22:51:46] 2025-07-28 02:51:13,728 | INFO     | -- intersect: 202791269780.41595
[2025-07-27 22:51:46] 2025-07-28 02:51:13,728 | INFO     | current memory leak: -115.64 B/s (using 64 data points, chi2=0.16)
[2025-07-27 22:51:46] 2025-07-28 02:51:13,728 | INFO     | could have reported an average CPU frequency of 2830 MHz (6 samples)
[2025-07-27 22:51:46] 2025-07-28 02:51:13,728 | INFO     | ..............................
[2025-07-27 22:51:46] 2025-07-28 02:51:13,729 | INFO     | . Timing measurements:
[2025-07-27 22:51:46] 2025-07-28 02:51:13,729 | INFO     | . get job = 0 s
[2025-07-27 22:51:46] 2025-07-28 02:51:13,729 | INFO     | . initial setup = 2 s
[2025-07-27 22:51:46] 2025-07-28 02:51:13,729 | INFO     | . payload setup = 7 s
[2025-07-27 22:51:46] 2025-07-28 02:51:13,729 | INFO     | . stage-in = 0 s
[2025-07-27 22:51:46] 2025-07-28 02:51:13,729 | INFO     | . payload execution = 4296 s
[2025-07-27 22:51:46] 2025-07-28 02:51:13,729 | INFO     | . stage-out = 0 s
[2025-07-27 22:51:46] 2025-07-28 02:51:13,729 | INFO     | . log creation = 0 s
[2025-07-27 22:51:46] 2025-07-28 02:51:13,729 | INFO     | ..............................
[2025-07-27 22:51:46] 2025-07-28 02:51:13,828 | INFO     | 
[2025-07-27 22:51:46] 2025-07-28 02:51:13,828 | INFO     | job summary report
[2025-07-27 22:51:46] 2025-07-28 02:51:13,828 | INFO     | --------------------------------------------------
[2025-07-27 22:51:46] 2025-07-28 02:51:13,828 | INFO     | PanDA job id: 6747599732
[2025-07-27 22:51:46] 2025-07-28 02:51:13,828 | INFO     | task id: 45743349
[2025-07-27 22:51:46] 2025-07-28 02:51:13,828 | INFO     | errors: (none)
[2025-07-27 22:51:46] 2025-07-28 02:51:13,828 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 22:51:46] 2025-07-28 02:51:13,828 | INFO     | pilot state: finished 
[2025-07-27 22:51:46] 2025-07-28 02:51:13,829 | INFO     | transexitcode: 0
[2025-07-27 22:51:46] 2025-07-28 02:51:13,829 | INFO     | exeerrorcode: 0
[2025-07-27 22:51:46] 2025-07-28 02:51:13,829 | INFO     | exeerrordiag: 
[2025-07-27 22:51:46] 2025-07-28 02:51:13,829 | INFO     | exitcode: 0
[2025-07-27 22:51:46] 2025-07-28 02:51:13,829 | INFO     | exitmsg: OK
[2025-07-27 22:51:46] 2025-07-28 02:51:13,829 | INFO     | cpuconsumptiontime: 46015 s
[2025-07-27 22:51:46] 2025-07-28 02:51:13,829 | INFO     | nevents: 400
[2025-07-27 22:51:46] 2025-07-28 02:51:13,829 | INFO     | neventsw: 0
[2025-07-27 22:51:46] 2025-07-28 02:51:13,829 | INFO     | pid: 2111147
[2025-07-27 22:51:46] 2025-07-28 02:51:13,829 | INFO     | pgrp: 2111147
[2025-07-27 22:51:46] 2025-07-28 02:51:13,829 | INFO     | corecount: 12
[2025-07-27 22:51:46] 2025-07-28 02:51:13,829 | INFO     | event service: False
[2025-07-27 22:51:46] 2025-07-28 02:51:13,829 | INFO     | sizes: {0: 2397304, 1: 2397503, 5: 2397765, 12: 2397821, 4308: 2423687, 4309: 2432685, 4310: 2432869, 4315: 2433063}
[2025-07-27 22:51:46] 2025-07-28 02:51:13,829 | INFO     | --------------------------------------------------
[2025-07-27 22:51:46] 2025-07-28 02:51:13,830 | INFO     | 
[2025-07-27 22:51:46] 2025-07-28 02:51:13,830 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 22:51:46] 2025-07-28 02:51:13,850 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 22:51:46] 2025-07-28 02:51:13,851 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 22:51:46] 2025-07-28 02:51:13,851 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 22:51:46] 2025-07-28 02:51:13,851 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 22:51:46] 2025-07-28 02:51:13,851 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 22:51:46] 2025-07-28 02:51:13,851 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 22:51:46] 2025-07-28 02:51:13,851 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 22:51:46] 2025-07-28 02:51:13,851 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 22:51:46] 2025-07-28 02:51:13,851 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 22:51:46] 2025-07-28 02:51:13,851 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 22:51:46] 2025-07-28 02:51:13,851 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 22:51:46] 2025-07-28 02:51:13,851 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 22:51:46] 2025-07-28 02:51:13,852 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 22:51:46] 2025-07-28 02:51:13,852 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 22:51:46] 2025-07-28 02:51:13,852 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 22:51:46] 2025-07-28 02:51:13,852 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 22:51:46] 2025-07-28 02:51:13,852 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 22:51:46] 2025-07-28 02:51:13,852 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 22:51:46] 2025-07-28 02:51:13,852 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 22:51:46] 2025-07-28 02:51:13,852 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 22:51:46] 2025-07-28 02:51:13,852 | INFO     | job 6747599732 has completed (purged errors)
[2025-07-27 22:51:46] 2025-07-28 02:51:13,853 | INFO     | overall cleanup function is called
[2025-07-27 22:51:46] 2025-07-28 02:51:14,860 | INFO     | --- collectZombieJob: --- 10, [2111147]
[2025-07-27 22:51:46] 2025-07-28 02:51:14,860 | INFO     | zombie collector waiting for pid 2111147
[2025-07-27 22:51:46] 2025-07-28 02:51:14,860 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 22:51:46] 2025-07-28 02:51:14,861 | INFO     | collected zombie processes
[2025-07-27 22:51:46] 2025-07-28 02:51:14,861 | INFO     | will attempt to kill all subprocesses of pid=2111147
[2025-07-27 22:51:46] 2025-07-28 02:51:15,101 | INFO     | process IDs to be killed: [2111147] (in reverse order)
[2025-07-27 22:51:46] 2025-07-28 02:51:15,186 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 22:51:46] 2025-07-28 02:51:15,186 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 22:51:46] 2025-07-28 02:51:15,198 | INFO     | did not find any defunct processes belonging to 2111147
[2025-07-27 22:51:46] 2025-07-28 02:51:15,210 | INFO     | did not find any defunct processes belonging to 2111147
[2025-07-27 22:51:46] 2025-07-28 02:51:15,211 | INFO     | ready for new job
[2025-07-27 22:51:46] 2025-07-28 02:51:15,211 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 22:51:46] 2025-07-28 02:51:15,212 | INFO     | ***************************************
[2025-07-27 22:51:46] 2025-07-28 02:51:15,213 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 22:51:46] 2025-07-28 02:51:15,213 | INFO     | ***************************************
[2025-07-27 22:51:46] 2025-07-28 02:51:15,213 | INFO     | 
[2025-07-27 22:51:46] 2025-07-28 02:51:15,229 | INFO     | architecture information:
[2025-07-27 22:51:46] 2025-07-28 02:51:15,230 | INFO     | executing command: cat /etc/os-release
[2025-07-27 22:51:46] 2025-07-28 02:51:15,245 | INFO     | cat /etc/os-release:
[2025-07-27 22:51:46] NAME="CentOS Linux"
[2025-07-27 22:51:46] VERSION="7 (Core)"
[2025-07-27 22:51:46] ID="centos"
[2025-07-27 22:51:46] ID_LIKE="rhel fedora"
[2025-07-27 22:51:46] VERSION_ID="7"
[2025-07-27 22:51:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 22:51:46] ANSI_COLOR="0;31"
[2025-07-27 22:51:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 22:51:46] HOME_URL="https://www.centos.org/"
[2025-07-27 22:51:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 22:51:46] 
[2025-07-27 22:51:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 22:51:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 22:51:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 22:51:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 22:51:46] 
[2025-07-27 22:51:46] 2025-07-28 02:51:15,245 | INFO     | ***************************************
[2025-07-27 22:51:46] 2025-07-28 02:51:15,750 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 22:51:46] 2025-07-28 02:51:15,765 | INFO     | sufficient remaining disk space (76505153536 B)
[2025-07-27 22:51:46] 2025-07-28 02:51:15,766 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 22:51:46] 2025-07-28 02:51:15,766 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 22:51:46] 2025-07-28 02:51:15,766 | INFO     | update_server=False
[2025-07-27 22:51:46] 2025-07-28 02:51:15,766 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 22:51:46] 2025-07-28 02:51:15,766 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 22:51:46] 2025-07-28 02:51:15,767 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 22:51:46] 2025-07-28 02:51:15,767 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 22:51:46] 2025-07-28 02:51:15,767 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 22:51:46] 2025-07-28 02:51:15,768 | INFO     | aborting loop
[2025-07-27 22:51:46] 2025-07-28 02:51:16,069 | INFO     | all payload control threads have been joined
[2025-07-27 22:51:46] 2025-07-28 02:51:16,469 | INFO     | all data control threads have been joined
[2025-07-27 22:51:46] 2025-07-28 02:51:16,771 | INFO     | [job] retrieve thread has finished
[2025-07-27 22:51:46] 2025-07-28 02:51:16,773 | INFO     | [job] job monitor thread has finished
[2025-07-27 22:51:46] 2025-07-28 02:51:16,774 | INFO     | [job] queue monitor thread has finished
[2025-07-27 22:51:46] 2025-07-28 02:51:17,074 | INFO     | [payload] control thread has finished
[2025-07-27 22:51:46] 2025-07-28 02:51:17,365 | INFO     | all job control threads have been joined
[2025-07-27 22:51:46] 2025-07-28 02:51:17,474 | INFO     | [data] control thread has finished
[2025-07-27 22:51:46] 2025-07-28 02:51:17,494 | INFO     | [payload] validate_post thread has finished
[2025-07-27 22:51:46] 2025-07-28 02:51:17,530 | INFO     | [job] validate thread has finished
[2025-07-27 22:51:46] 2025-07-28 02:51:17,631 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 22:51:46] 2025-07-28 02:51:17,772 | INFO     | [data] copytool_out thread has finished
[2025-07-27 22:51:46] 2025-07-28 02:51:17,814 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 22:51:46] 2025-07-28 02:51:17,883 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 22:51:46] 2025-07-28 02:51:17,935 | INFO     | [data] copytool_in thread has finished
[2025-07-27 22:51:46] 2025-07-28 02:51:18,348 | INFO     | [payload] failed_post thread has finished
[2025-07-27 22:51:46] 2025-07-28 02:51:18,370 | INFO     | [job] control thread has finished
[2025-07-27 22:51:46] 2025-07-28 02:51:19,772 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 22:51:46] 2025-07-28 02:51:26,543 | INFO     | job.realtimelogging is not enabled
[2025-07-27 22:51:46] 2025-07-28 02:51:27,548 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 22:51:46] 2025-07-28 02:51:29,184 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140176750589760)>', '<ExcThread(monitor, started 140175963309824)>']
[2025-07-27 22:51:46] 2025-07-28 02:51:34,210 | INFO     | all workflow threads have been joined
[2025-07-27 22:51:46] 2025-07-28 02:51:34,210 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 22:51:46] 2025-07-28 02:51:34,211 | INFO     | traces error code: 0
[2025-07-27 22:51:46] 2025-07-28 02:51:34,211 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 22:51:46] 2025-07-28 02:51:45,938 | INFO     | PID=2103472 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 22:51:46] 2025-07-28 02:51:45,939 | INFO     | .. there are 13 such processes running
[2025-07-27 22:51:46] 2025-07-28 02:51:45,940 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 22:51:46] 2025-07-28 02:51:45,940 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 22:51:46] 2025-07-28 02:51:45,940 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 22:51:46] 2025-07-28 02:51:45,940 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 22:51:46] 2025-07-28 02:51:45,940 | INFO     | [monitor] control thread has ended
[2025-07-27 22:51:46] 2025-07-28 02:51:46,103 [wrapper] ==== pilot stdout END ====
[2025-07-27 22:51:46] 2025-07-28 02:51:46,108 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 22:51:46] 2025-07-28 02:51:46,112 [wrapper] pilotpid: 2103472
[2025-07-27 22:51:46] 2025-07-28 02:51:46,116 [wrapper] Pilot exit status: 0
[2025-07-27 22:51:46] 2025-07-28 02:51:46,132 [wrapper] pandaids: 6747599732
[2025-07-27 22:51:46] 2025-07-28 02:51:46,218 [wrapper] cleanup supervisor_pilot 2215003 2103473
[2025-07-27 22:51:46] 2025-07-28 02:51:46,221 [wrapper] Test setup, not cleaning
[2025-07-27 22:51:46] 2025-07-28 02:51:46,224 [wrapper] apfmon messages muted
[2025-07-27 22:51:46] 2025-07-28 02:51:46,228 [wrapper] ==== wrapper stdout END ====
[2025-07-27 22:51:46] 2025-07-28 02:51:46,233 [wrapper] ==== wrapper stderr END ====
[2025-07-27 22:51:46]  *** Error codes and diagnostics ***
[2025-07-27 22:51:46]     "exeErrorCode": 0,
[2025-07-27 22:51:46]     "exeErrorDiag": "",
[2025-07-27 22:51:46]     "pilotErrorCode": 0,
[2025-07-27 22:51:46]     "pilotErrorDiag": "",
[2025-07-27 22:51:46]  *** Listing of results directory ***
[2025-07-27 22:51:46] total 358768
[2025-07-27 22:51:46] -rw-r--r--. 1 boincer umatlas    550332 Jun 18 11:33 pilot3.tar.gz
[2025-07-27 22:51:46] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 14:47 queuedata.json
[2025-07-27 22:51:46] -rwx------. 1 boincer umatlas     36292 Jul 27 14:48 runpilot2-wrapper.sh
[2025-07-27 22:51:46] -rw-r--r--. 1 boincer umatlas       100 Jul 27 21:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 22:51:46] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 21:38 run_atlas
[2025-07-27 22:51:46] -rw-r--r--. 1 boincer umatlas       105 Jul 27 21:38 job.xml
[2025-07-27 22:51:46] -rw-r--r--. 2 boincer umatlas 149807336 Jul 27 21:38 EVNT.45743347._002864.pool.root.1
[2025-07-27 22:51:46] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 21:38 start_atlas.sh
[2025-07-27 22:51:46] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 21:38 shared
[2025-07-27 22:51:46] -rw-r--r--. 2 boincer umatlas    564557 Jul 27 21:38 input.tar.gz
[2025-07-27 22:51:46] -rw-r--r--. 1 boincer umatlas         0 Jul 27 21:38 boinc_lockfile
[2025-07-27 22:51:46] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 21:38 pandaJob.out
[2025-07-27 22:51:46] -rw-------. 1 boincer umatlas    980125 Jul 27 21:39 agis_schedconf.cvmfs.json
[2025-07-27 22:51:46] -rw-------. 1 boincer umatlas   1593052 Jul 27 21:39 agis_ddmendpoints.agis.ALL.json
[2025-07-27 22:51:46] drwx------. 6 boincer umatlas      4096 Jul 27 21:39 pilot3
[2025-07-27 22:51:46] -rw-r--r--. 1 boincer umatlas      6841 Jul 27 22:48 init_data.xml
[2025-07-27 22:51:46] -rw-------. 1 boincer umatlas 212069166 Jul 27 22:50 HITS.45743349._054115.pool.root.1
[2025-07-27 22:51:46] -rw-r--r--. 1 boincer umatlas       529 Jul 27 22:50 boinc_task_state.xml
[2025-07-27 22:51:46] -rw-------. 1 boincer umatlas      1034 Jul 27 22:51 memory_monitor_summary.json
[2025-07-27 22:51:46] -rw-------. 1 boincer umatlas    357649 Jul 27 22:51 log.45743349._054115.job.log.tgz.1
[2025-07-27 22:51:46] -rw-------. 1 boincer umatlas      7823 Jul 27 22:51 heartbeat.json
[2025-07-27 22:51:46] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 22:51 boinc_mmap_file
[2025-07-27 22:51:46] -rw-r--r--. 1 boincer umatlas        27 Jul 27 22:51 wrapper_checkpoint.txt
[2025-07-27 22:51:46] -rw-------. 1 boincer umatlas        95 Jul 27 22:51 pilot_heartbeat.json
[2025-07-27 22:51:46] -rw-------. 1 boincer umatlas       823 Jul 27 22:51 pilotlog.txt
[2025-07-27 22:51:46] -rw-------. 1 boincer umatlas    436123 Jul 27 22:51 log.45743349._054115.job.log.1
[2025-07-27 22:51:46] -rw-------. 1 boincer umatlas       357 Jul 27 22:51 output.list
[2025-07-27 22:51:46] -rw-r--r--. 1 boincer umatlas       620 Jul 27 22:51 runtime_log
[2025-07-27 22:51:46] -rw-------. 1 boincer umatlas    808960 Jul 27 22:51 result.tar.gz
[2025-07-27 22:51:46] -rw-r--r--. 1 boincer umatlas      8662 Jul 27 22:51 runtime_log.err
[2025-07-27 22:51:46] -rw-------. 1 boincer umatlas       654 Jul 27 22:51 NvKLDmlbL07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmaAWLDmIvuvAn.diag
[2025-07-27 22:51:46] -rw-r--r--. 1 boincer umatlas     21902 Jul 27 22:51 stderr.txt
[2025-07-27 22:51:46] HITS file was successfully produced:
[2025-07-27 22:51:46] -rw-------. 1 boincer umatlas 212069166 Jul 27 22:50 shared/HITS.pool.root.1
[2025-07-27 22:51:46]  *** Contents of shared directory: ***
[2025-07-27 22:51:46] total 354764
[2025-07-27 22:51:46] -rw-r--r--. 2 boincer umatlas 149807336 Jul 27 21:38 ATLAS.root_0
[2025-07-27 22:51:46] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 21:38 start_atlas.sh
[2025-07-27 22:51:46] -rw-r--r--. 2 boincer umatlas    564557 Jul 27 21:38 input.tar.gz
[2025-07-27 22:51:46] -rw-------. 1 boincer umatlas 212069166 Jul 27 22:50 HITS.pool.root.1
[2025-07-27 22:51:46] -rw-------. 1 boincer umatlas    808960 Jul 27 22:51 result.tar.gz
22:51:47 (2099087): run_atlas exited; CPU time 46036.397812
22:51:47 (2099087): called boinc_finish(0)

</stderr_txt>
]]>

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