Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:25:52 (2893351): wrapper (7.7.26015): starting
16:25:52 (2893351): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 16:25:52] Arguments: --nthreads 12
[2025-07-28 16:25:52] Threads: 12
[2025-07-28 16:25:52] Checking for CVMFS
[2025-07-28 16:25:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 16:25:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 16:25:52] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 16:26:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 16:26:54] 2.13.1.0 3600 4784 152176 148851 3 110 27988537 46080000 42962 130560 0 27482421 99.950 4626715 26964 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-07-28 16:26:54] CVMFS is ok
[2025-07-28 16:26:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 16:26:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 16:26:54] Further information can be found at the LHC@home message board.
[2025-07-28 16:26:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 16:26:54] Checking for apptainer binary...
[2025-07-28 16:26:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 16:26:54] Running /usr/bin/apptainer --version
[2025-07-28 16:26:54] apptainer version 1.4.1-1.el9
[2025-07-28 16:26:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 16:26:55] mff2102.farm.particle.cz
[2025-07-28 16:26:55] apptainer works
[2025-07-28 16:26:55] Set ATHENA_PROC_NUMBER=12
[2025-07-28 16:26:55] Set ATHENA_CORE_NUMBER=12
[2025-07-28 16:26:55] Starting ATLAS job with PandaID=6747375667
[2025-07-28 16:26:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 17:40:38]  *** The last 200 lines of the pilot log: ***
[2025-07-28 17:40:38] 2025-07-28 15:37:45,762 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:40:38] 2025-07-28 15:37:47,770 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 17:40:38] 2025-07-28 15:37:47,859 | INFO     | job 6747375667 has state=finished
[2025-07-28 17:40:38] 2025-07-28 15:37:47,860 | INFO     | preparing for final server update for job 6747375667 in state='finished'
[2025-07-28 17:40:38] 2025-07-28 15:37:47,860 | INFO     | this job has now completed (state=finished)
[2025-07-28 17:40:38] 2025-07-28 15:37:47,860 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 17:40:38] 2025-07-28 15:37:47,860 | INFO     | log transfer has been attempted: DONE
[2025-07-28 17:40:38] 2025-07-28 15:37:47,860 | INFO     | job 6747375667 has finished - writing final server update
[2025-07-28 17:40:38] 2025-07-28 15:37:47,860 | INFO     | total number of processed events: 400 (read)
[2025-07-28 17:40:38] 2025-07-28 15:37:47,863 | INFO     | executing command: lscpu
[2025-07-28 17:40:38] 2025-07-28 15:37:48,053 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 17:40:38] 2025-07-28 15:37:48,265 | INFO     | monitor loop #303: job 0:6747375667 is in state 'finished'
[2025-07-28 17:40:38] 2025-07-28 15:37:48,266 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:40:38] 2025-07-28 15:37:50,770 | INFO     | monitor loop #304: job 0:6747375667 is in state 'finished'
[2025-07-28 17:40:38] 2025-07-28 15:37:50,771 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:40:38] 2025-07-28 15:37:53,275 | INFO     | monitor loop #305: job 0:6747375667 is in state 'finished'
[2025-07-28 17:40:38] 2025-07-28 15:37:53,275 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:40:38] 2025-07-28 15:37:55,783 | INFO     | monitor loop #306: job 0:6747375667 is in state 'finished'
[2025-07-28 17:40:38] 2025-07-28 15:37:55,784 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:40:38] 2025-07-28 15:37:58,290 | INFO     | monitor loop #307: job 0:6747375667 is in state 'finished'
[2025-07-28 17:40:38] 2025-07-28 15:37:58,291 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:40:38] 2025-07-28 15:38:00,795 | INFO     | monitor loop #308: job 0:6747375667 is in state 'finished'
[2025-07-28 17:40:38] 2025-07-28 15:38:00,795 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:40:38] 2025-07-28 15:38:03,307 | INFO     | monitor loop #309: job 0:6747375667 is in state 'finished'
[2025-07-28 17:40:38] 2025-07-28 15:38:03,307 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:40:38] 2025-07-28 15:38:03,555 | INFO     | PID=2915804 has CPU usage=8.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 17:40:38] 2025-07-28 15:38:03,556 | INFO     | .. there are 69 such processes running
[2025-07-28 17:40:38] 2025-07-28 15:38:05,812 | INFO     | monitor loop #310: job 0:6747375667 is in state 'finished'
[2025-07-28 17:40:38] 2025-07-28 15:38:05,812 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:40:38] 2025-07-28 15:38:08,317 | INFO     | monitor loop #311: job 0:6747375667 is in state 'finished'
[2025-07-28 17:40:38] 2025-07-28 15:38:08,319 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:40:38] 2025-07-28 15:38:10,823 | INFO     | monitor loop #312: job 0:6747375667 is in state 'finished'
[2025-07-28 17:40:38] 2025-07-28 15:38:10,824 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:40:38] 2025-07-28 15:38:13,328 | INFO     | monitor loop #313: job 0:6747375667 is in state 'finished'
[2025-07-28 17:40:38] 2025-07-28 15:38:13,329 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:40:38] 2025-07-28 15:38:15,833 | INFO     | monitor loop #314: job 0:6747375667 is in state 'finished'
[2025-07-28 17:40:38] 2025-07-28 15:38:15,834 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:40:38] 2025-07-28 15:38:17,206 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 17:40:38] 2025-07-28 15:38:17,221 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2820.8259374999993
[2025-07-28 17:40:38] 2025-07-28 15:38:17,237 | INFO     | using path: /scratch/.boinc/slots/0/PanDA_Pilot-6747375667/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 17:40:38] 2025-07-28 15:38:17,238 | INFO     | extracted standard info from prmon json
[2025-07-28 17:40:38] 2025-07-28 15:38:17,238 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 17:40:38] 2025-07-28 15:38:17,238 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 17:40:38] 2025-07-28 15:38:17,238 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 17:40:38] 2025-07-28 15:38:17,238 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 17:40:38] 2025-07-28 15:38:17,240 | INFO     | fitting pss+swap vs Time
[2025-07-28 17:40:38] 2025-07-28 15:38:17,240 | INFO     | sum of square deviations: 66959395.0
[2025-07-28 17:40:38] 2025-07-28 15:38:17,240 | INFO     | sum of deviations: -2326200504.5
[2025-07-28 17:40:38] 2025-07-28 15:38:17,240 | INFO     | mean x: 1753715117.5
[2025-07-28 17:40:38] 2025-07-28 15:38:17,240 | INFO     | mean y: 2772148.5166666666
[2025-07-28 17:40:38] 2025-07-28 15:38:17,240 | INFO     | -- intersect: 60927650443.456116
[2025-07-28 17:40:38] 2025-07-28 15:38:17,241 | INFO     | intersect: 60927650443.456116
[2025-07-28 17:40:38] 2025-07-28 15:38:17,241 | INFO     | chi2: 0.016553911881495957
[2025-07-28 17:40:38] 2025-07-28 15:38:17,241 | INFO     | -- intersect: 60927650443.456116
[2025-07-28 17:40:38] 2025-07-28 15:38:17,241 | INFO     | current memory leak: -34.74 B/s (using 60 data points, chi2=0.02)
[2025-07-28 17:40:38] 2025-07-28 15:38:17,241 | INFO     | could have reported an average CPU frequency of 2827 MHz (6 samples)
[2025-07-28 17:40:38] 2025-07-28 15:38:17,241 | INFO     | ..............................
[2025-07-28 17:40:38] 2025-07-28 15:38:17,241 | INFO     | . Timing measurements:
[2025-07-28 17:40:38] 2025-07-28 15:38:17,241 | INFO     | . get job = 0 s
[2025-07-28 17:40:38] 2025-07-28 15:38:17,241 | INFO     | . initial setup = 2 s
[2025-07-28 17:40:38] 2025-07-28 15:38:17,242 | INFO     | . payload setup = 38 s
[2025-07-28 17:40:38] 2025-07-28 15:38:17,242 | INFO     | . stage-in = 0 s
[2025-07-28 17:40:38] 2025-07-28 15:38:17,242 | INFO     | . payload execution = 4077 s
[2025-07-28 17:40:38] 2025-07-28 15:38:17,242 | INFO     | . stage-out = 1 s
[2025-07-28 17:40:38] 2025-07-28 15:38:17,242 | INFO     | . log creation = 0 s
[2025-07-28 17:40:38] 2025-07-28 15:38:17,242 | INFO     | ..............................
[2025-07-28 17:40:38] 2025-07-28 15:38:17,329 | INFO     | 
[2025-07-28 17:40:38] 2025-07-28 15:38:17,330 | INFO     | job summary report
[2025-07-28 17:40:38] 2025-07-28 15:38:17,330 | INFO     | --------------------------------------------------
[2025-07-28 17:40:38] 2025-07-28 15:38:17,330 | INFO     | PanDA job id: 6747375667
[2025-07-28 17:40:38] 2025-07-28 15:38:17,330 | INFO     | task id: 45743349
[2025-07-28 17:40:38] 2025-07-28 15:38:17,330 | INFO     | errors: (none)
[2025-07-28 17:40:38] 2025-07-28 15:38:17,330 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 17:40:38] 2025-07-28 15:38:17,330 | INFO     | pilot state: finished 
[2025-07-28 17:40:38] 2025-07-28 15:38:17,330 | INFO     | transexitcode: 0
[2025-07-28 17:40:38] 2025-07-28 15:38:17,330 | INFO     | exeerrorcode: 0
[2025-07-28 17:40:38] 2025-07-28 15:38:17,330 | INFO     | exeerrordiag: 
[2025-07-28 17:40:38] 2025-07-28 15:38:17,330 | INFO     | exitcode: 0
[2025-07-28 17:40:38] 2025-07-28 15:38:17,330 | INFO     | exitmsg: OK
[2025-07-28 17:40:38] 2025-07-28 15:38:17,330 | INFO     | cpuconsumptiontime: 42269 s
[2025-07-28 17:40:38] 2025-07-28 15:38:17,330 | INFO     | nevents: 400
[2025-07-28 17:40:38] 2025-07-28 15:38:17,330 | INFO     | neventsw: 0
[2025-07-28 17:40:38] 2025-07-28 15:38:17,331 | INFO     | pid: 2942117
[2025-07-28 17:40:38] 2025-07-28 15:38:17,331 | INFO     | pgrp: 2942117
[2025-07-28 17:40:38] 2025-07-28 15:38:17,331 | INFO     | corecount: 12
[2025-07-28 17:40:38] 2025-07-28 15:38:17,331 | INFO     | event service: False
[2025-07-28 17:40:38] 2025-07-28 15:38:17,331 | INFO     | sizes: {0: 2391081, 1: 2391938, 2: 2391938, 12: 2391966, 23: 2391994, 32: 2392284, 34: 2392440, 4120: 2418554, 4122: 2427554, 4125: 2427610, 4154: 2427804}
[2025-07-28 17:40:38] 2025-07-28 15:38:17,331 | INFO     | --------------------------------------------------
[2025-07-28 17:40:38] 2025-07-28 15:38:17,331 | INFO     | 
[2025-07-28 17:40:38] 2025-07-28 15:38:17,331 | INFO     | executing command: ls -lF /scratch/.boinc/slots/0
[2025-07-28 17:40:38] 2025-07-28 15:38:17,413 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 17:40:38] 2025-07-28 15:38:17,413 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 17:40:38] 2025-07-28 15:38:17,413 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 17:40:38] 2025-07-28 15:38:17,413 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 17:40:38] 2025-07-28 15:38:17,413 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 17:40:38] 2025-07-28 15:38:17,413 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 17:40:38] 2025-07-28 15:38:17,413 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 17:40:38] 2025-07-28 15:38:17,413 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 17:40:38] 2025-07-28 15:38:17,414 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 17:40:38] 2025-07-28 15:38:17,414 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 17:40:38] 2025-07-28 15:38:17,414 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 17:40:38] 2025-07-28 15:38:17,414 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 17:40:38] 2025-07-28 15:38:17,414 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 17:40:38] 2025-07-28 15:38:17,414 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 17:40:38] 2025-07-28 15:38:17,414 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 17:40:38] 2025-07-28 15:38:17,414 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 17:40:38] 2025-07-28 15:38:17,414 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 17:40:38] 2025-07-28 15:38:17,414 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 17:40:38] 2025-07-28 15:38:17,414 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 17:40:38] 2025-07-28 15:38:17,414 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 17:40:38] 2025-07-28 15:38:17,414 | INFO     | job 6747375667 has completed (purged errors)
[2025-07-28 17:40:38] 2025-07-28 15:38:17,415 | INFO     | overall cleanup function is called
[2025-07-28 17:40:38] 2025-07-28 15:38:18,425 | INFO     | --- collectZombieJob: --- 10, [2942117]
[2025-07-28 17:40:38] 2025-07-28 15:38:18,426 | INFO     | zombie collector waiting for pid 2942117
[2025-07-28 17:40:38] 2025-07-28 15:38:18,426 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 17:40:38] 2025-07-28 15:38:18,426 | INFO     | collected zombie processes
[2025-07-28 17:40:38] 2025-07-28 15:38:18,426 | INFO     | will attempt to kill all subprocesses of pid=2942117
[2025-07-28 17:40:38] 2025-07-28 15:38:18,998 | INFO     | process IDs to be killed: [2942117] (in reverse order)
[2025-07-28 17:40:38] 2025-07-28 15:38:19,272 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 17:40:38] 2025-07-28 15:38:19,272 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 17:40:38] 2025-07-28 15:38:19,299 | INFO     | did not find any defunct processes belonging to 2942117
[2025-07-28 17:40:38] 2025-07-28 15:38:19,322 | INFO     | did not find any defunct processes belonging to 2942117
[2025-07-28 17:40:38] 2025-07-28 15:38:19,323 | INFO     | ready for new job
[2025-07-28 17:40:38] 2025-07-28 15:38:19,323 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 17:40:38] 2025-07-28 15:38:19,324 | INFO     | ***************************************
[2025-07-28 17:40:38] 2025-07-28 15:38:19,324 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 17:40:38] 2025-07-28 15:38:19,324 | INFO     | ***************************************
[2025-07-28 17:40:38] 2025-07-28 15:38:19,324 | INFO     | 
[2025-07-28 17:40:38] 2025-07-28 15:38:19,330 | INFO     | architecture information:
[2025-07-28 17:40:38] 2025-07-28 15:38:19,333 | INFO     | executing command: cat /etc/os-release
[2025-07-28 17:40:38] 2025-07-28 15:38:19,466 | INFO     | cat /etc/os-release:
[2025-07-28 17:40:38] NAME="CentOS Linux"
[2025-07-28 17:40:38] VERSION="7 (Core)"
[2025-07-28 17:40:38] ID="centos"
[2025-07-28 17:40:38] ID_LIKE="rhel fedora"
[2025-07-28 17:40:38] VERSION_ID="7"
[2025-07-28 17:40:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 17:40:38] ANSI_COLOR="0;31"
[2025-07-28 17:40:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 17:40:38] HOME_URL="https://www.centos.org/"
[2025-07-28 17:40:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 17:40:38] 
[2025-07-28 17:40:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 17:40:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 17:40:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 17:40:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 17:40:38] 
[2025-07-28 17:40:38] 2025-07-28 15:38:19,466 | INFO     | ***************************************
[2025-07-28 17:40:38] 2025-07-28 15:38:19,969 | INFO     | executing command: df -mP /scratch/.boinc/slots/0
[2025-07-28 17:40:38] 2025-07-28 15:38:20,049 | INFO     | sufficient remaining disk space (1591851614208 B)
[2025-07-28 17:40:38] 2025-07-28 15:38:20,050 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 17:40:38] 2025-07-28 15:38:20,050 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 17:40:38] 2025-07-28 15:38:20,050 | INFO     | update_server=False
[2025-07-28 17:40:38] 2025-07-28 15:38:20,050 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 17:40:38] 2025-07-28 15:38:20,050 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 17:40:38] 2025-07-28 15:38:20,051 | INFO     | aborting loop
[2025-07-28 17:40:38] 2025-07-28 15:38:20,403 | INFO     | all payload control threads have been joined
[2025-07-28 17:40:38] 2025-07-28 15:38:20,831 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 17:40:38] 2025-07-28 15:38:20,856 | INFO     | all data control threads have been joined
[2025-07-28 17:40:38] 2025-07-28 15:38:20,902 | INFO     | all job control threads have been joined
[2025-07-28 17:40:38] 2025-07-28 15:38:20,922 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 17:40:38] 2025-07-28 15:38:21,055 | INFO     | [job] retrieve thread has finished
[2025-07-28 17:40:38] 2025-07-28 15:38:21,056 | INFO     | [job] job monitor thread has finished
[2025-07-28 17:40:38] 2025-07-28 15:38:21,139 | INFO     | [job] validate thread has finished
[2025-07-28 17:40:38] 2025-07-28 15:38:21,286 | INFO     | [payload] validate_post thread has finished
[2025-07-28 17:40:38] 2025-07-28 15:38:21,409 | INFO     | [payload] control thread has finished
[2025-07-28 17:40:38] 2025-07-28 15:38:21,588 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 17:40:38] 2025-07-28 15:38:21,668 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 17:40:38] 2025-07-28 15:38:21,673 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 17:40:38] 2025-07-28 15:38:21,862 | INFO     | [data] control thread has finished
[2025-07-28 17:40:38] 2025-07-28 15:38:21,908 | INFO     | [job] control thread has finished
[2025-07-28 17:40:38] 2025-07-28 15:38:21,994 | INFO     | [data] copytool_in thread has finished
[2025-07-28 17:40:38] 2025-07-28 15:38:22,347 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 17:40:38] 2025-07-28 15:38:22,458 | INFO     | [payload] failed_post thread has finished
[2025-07-28 17:40:38] 2025-07-28 15:38:22,459 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 17:40:38] 2025-07-28 15:38:22,838 | INFO     | [data] copytool_out thread has finished
[2025-07-28 17:40:38] 2025-07-28 15:38:23,352 | INFO     | [job] queue monitor thread has finished
[2025-07-28 17:40:38] 2025-07-28 15:38:24,931 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 17:40:38] 2025-07-28 15:38:25,449 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140427008829248)>', '<ExcThread(monitor, started 140426656847616)>']
[2025-07-28 17:40:38] 2025-07-28 15:38:30,475 | INFO     | all workflow threads have been joined
[2025-07-28 17:40:38] 2025-07-28 15:38:30,475 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 17:40:38] 2025-07-28 15:38:30,476 | INFO     | traces error code: 0
[2025-07-28 17:40:38] 2025-07-28 15:38:30,476 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 17:40:38] 2025-07-28 15:38:50,384 | INFO     | PID=2915804 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 17:40:38] 2025-07-28 15:38:50,384 | INFO     | .. there are 70 such processes running
[2025-07-28 17:40:38] 2025-07-28 15:38:50,385 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 17:40:38] 2025-07-28 15:38:50,385 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 17:40:38] 2025-07-28 15:38:50,385 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 17:40:38] 2025-07-28 15:38:50,385 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 17:40:38] 2025-07-28 15:38:50,385 | INFO     | [monitor] control thread has ended
[2025-07-28 17:40:38] 2025-07-28 15:38:50,633 [wrapper] ==== pilot stdout END ====
[2025-07-28 17:40:38] 2025-07-28 15:38:50,662 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 17:40:38] 2025-07-28 15:38:50,666 [wrapper] pilotpid: 2915804
[2025-07-28 17:40:38] 2025-07-28 15:38:50,669 [wrapper] Pilot exit status: 0
[2025-07-28 17:40:38] 2025-07-28 15:38:50,782 [wrapper] pandaids: 6747375667
[2025-07-28 17:40:38] 2025-07-28 15:38:51,005 [wrapper] cleanup supervisor_pilot 3086836 2915805
[2025-07-28 17:40:38] 2025-07-28 15:38:51,042 [wrapper] Test setup, not cleaning
[2025-07-28 17:40:38] 2025-07-28 15:38:51,079 [wrapper] apfmon messages muted
[2025-07-28 17:40:38] 2025-07-28 15:38:51,088 [wrapper] ==== wrapper stdout END ====
[2025-07-28 17:40:38] 2025-07-28 15:38:51,131 [wrapper] ==== wrapper stderr END ====
[2025-07-28 17:40:38]  *** Error codes and diagnostics ***
[2025-07-28 17:40:38]     "exeErrorCode": 0,
[2025-07-28 17:40:38]     "exeErrorDiag": "",
[2025-07-28 17:40:38]     "pilotErrorCode": 0,
[2025-07-28 17:40:38]     "pilotErrorDiag": "",
[2025-07-28 17:40:38]  *** Listing of results directory ***
[2025-07-28 17:40:38] total 347116
[2025-07-28 17:40:38] -rw-r--r-- 1 boinc boinc    530466 Jul 27 12:10 pilot3.tar.gz
[2025-07-28 17:40:38] -rwx------ 1 boinc boinc     36292 Jul 27 12:33 runpilot2-wrapper.sh
[2025-07-28 17:40:38] -rw-r--r-- 1 boinc boinc      5112 Jul 27 12:33 queuedata.json
[2025-07-28 17:40:38] -rw-r--r-- 1 boinc boinc       100 Jul 28 16:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 17:40:38] -rwxr-xr-x 1 boinc boinc      7986 Jul 28 16:25 run_atlas
[2025-07-28 17:40:38] -rw-r--r-- 1 boinc boinc       105 Jul 28 16:25 job.xml
[2025-07-28 17:40:38] -rw-r--r-- 1 boinc boinc      6664 Jul 28 16:25 init_data.xml
[2025-07-28 17:40:38] -rw-r--r-- 2 boinc boinc 146396808 Jul 28 16:25 EVNT.45743347._002603.pool.root.1
[2025-07-28 17:40:38] -rw-r--r-- 2 boinc boinc     15095 Jul 28 16:25 start_atlas.sh
[2025-07-28 17:40:38] drwxrwx--x 2 boinc boinc      4096 Jul 28 16:25 shared
[2025-07-28 17:40:38] -rw-r--r-- 2 boinc boinc    542885 Jul 28 16:25 input.tar.gz
[2025-07-28 17:40:38] -rw-r--r-- 1 boinc boinc         0 Jul 28 16:25 boinc_lockfile
[2025-07-28 17:40:38] -rw-r--r-- 1 boinc boinc      2563 Jul 28 16:26 pandaJob.out
[2025-07-28 17:40:38] -rw------- 1 boinc boinc    977006 Jul 28 16:27 agis_schedconf.cvmfs.json
[2025-07-28 17:40:38] -rw------- 1 boinc boinc   1589827 Jul 28 16:27 agis_ddmendpoints.agis.ALL.json
[2025-07-28 17:40:38] drwx------ 4 boinc boinc      4096 Jul 28 16:27 pilot3
[2025-07-28 17:40:38] -rw------- 1 boinc boinc 203639823 Jul 28 17:37 HITS.45743349._046909.pool.root.1
[2025-07-28 17:40:38] -rw-r--r-- 1 boinc boinc       529 Jul 28 17:37 boinc_task_state.xml
[2025-07-28 17:40:38] -rw------- 1 boinc boinc      1022 Jul 28 17:37 memory_monitor_summary.json
[2025-07-28 17:40:38] -rw------- 1 boinc boinc    355342 Jul 28 17:37 log.45743349._046909.job.log.tgz.1
[2025-07-28 17:40:38] -rw------- 1 boinc boinc        95 Jul 28 17:38 pilot_heartbeat.json
[2025-07-28 17:40:38] -rw------- 1 boinc boinc      7783 Jul 28 17:38 heartbeat.json
[2025-07-28 17:40:38] -rw------- 1 boinc boinc       823 Jul 28 17:38 pilotlog.txt
[2025-07-28 17:40:38] -rw------- 1 boinc boinc    409995 Jul 28 17:38 log.45743349._046909.job.log.1
[2025-07-28 17:40:38] -rw------- 1 boinc boinc       357 Jul 28 17:38 output.list
[2025-07-28 17:40:38] -rw-r--r-- 1 boinc boinc       620 Jul 28 17:38 runtime_log
[2025-07-28 17:40:38] -rw------- 1 boinc boinc    788480 Jul 28 17:38 result.tar.gz
[2025-07-28 17:40:38] -rw------- 1 boinc boinc       662 Jul 28 17:38 TgXLDmHsD07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmV1ULDmvBbCBo.diag
[2025-07-28 17:40:38] -rw-r--r-- 1 boinc boinc      8721 Jul 28 17:38 runtime_log.err
[2025-07-28 17:40:38] -rw-r--r-- 1 boinc boinc        26 Jul 28 17:40 wrapper_checkpoint.txt
[2025-07-28 17:40:38] -rw-r--r-- 1 boinc boinc      8192 Jul 28 17:40 boinc_mmap_file
[2025-07-28 17:40:38] -rw-r--r-- 1 boinc boinc     22463 Jul 28 17:40 stderr.txt
[2025-07-28 17:40:38] HITS file was successfully produced:
[2025-07-28 17:40:38] -rw------- 1 boinc boinc 203639823 Jul 28 17:37 shared/HITS.pool.root.1
[2025-07-28 17:40:38]  *** Contents of shared directory: ***
[2025-07-28 17:40:38] total 343164
[2025-07-28 17:40:38] -rw-r--r-- 2 boinc boinc 146396808 Jul 28 16:25 ATLAS.root_0
[2025-07-28 17:40:38] -rw-r--r-- 2 boinc boinc     15095 Jul 28 16:25 start_atlas.sh
[2025-07-28 17:40:38] -rw-r--r-- 2 boinc boinc    542885 Jul 28 16:25 input.tar.gz
[2025-07-28 17:40:38] -rw------- 1 boinc boinc 203639823 Jul 28 17:37 HITS.pool.root.1
[2025-07-28 17:40:38] -rw------- 1 boinc boinc    788480 Jul 28 17:38 result.tar.gz
17:40:40 (2893351): run_atlas exited; CPU time 42454.510445
17:40:40 (2893351): called boinc_finish(0)

</stderr_txt>
]]>

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