Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:13:16 (976050): wrapper (7.7.26015): starting
20:13:16 (976050): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 20:13:16] Arguments: --nthreads 8
[2025-07-27 20:13:16] Threads: 8
[2025-07-27 20:13:16] Checking for CVMFS
[2025-07-27 20:13:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 20:13:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 20:13:17] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 20:13:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 20:13:17] 2.12.6.0 374543 19069 386088 148828 3 339 22496689 40960000 7465 16776704 2 64104265 99.783 75371047 22009 http://cvmfs-s1.hpc.swin.edu.au:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 20:13:17] CVMFS is ok
[2025-07-27 20:13:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 20:13:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 20:13:17] Further information can be found at the LHC@home message board.
[2025-07-27 20:13:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 20:13:17] Checking for apptainer binary...
[2025-07-27 20:13:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 20:13:17] Running /usr/bin/apptainer --version
[2025-07-27 20:13:17] apptainer version 1.4.1-1.el9
[2025-07-27 20:13:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 20:13:17] c7-10-13.aglt2.org
[2025-07-27 20:13:17] apptainer works
[2025-07-27 20:13:17] Set ATHENA_PROC_NUMBER=8
[2025-07-27 20:13:17] Set ATHENA_CORE_NUMBER=8
[2025-07-27 20:13:17] Starting ATLAS job with PandaID=6747599747
[2025-07-27 20:13:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 21:38:22]  *** The last 200 lines of the pilot log: ***
[2025-07-27 21:38:22]  is_tar=False
[2025-07-27 21:38:22]  lfn=log.45743349._054130.job.log.tgz.1
[2025-07-27 21:38:22]  mtime=0
[2025-07-27 21:38:22]  protocol_id=None
[2025-07-27 21:38:22]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 21:38:22]  replicas=None
[2025-07-27 21:38:22]  scope=mc23_13p6TeV
[2025-07-27 21:38:22]  status=None
[2025-07-27 21:38:22]  status_code=0
[2025-07-27 21:38:22]  storage_token=
[2025-07-27 21:38:22]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6747599747/log.45743349._054130.job.log.tgz.1
[2025-07-27 21:38:22]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/16/9e/log.45743349._054130.job.log.tgz.1
[2025-07-27 21:38:22]  workdir=None
[2025-07-27 21:38:22] ]
[2025-07-27 21:38:22] 2025-07-28 01:37:43,034 | INFO     | transferring file log.45743349._054130.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6747599747/log.45743349._054130.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 21:38:22] 2025-07-28 01:37:43,034 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6747599747/log.45743349._054130.job.log.tgz.1 /tmp/boinchome/slots/1/log.45743349._054130.job
[2025-07-27 21:38:22] 2025-07-28 01:37:43,059 | INFO     | adding to output.list: log.45743349._054130.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/16/9e/log.45743349._054130.job.log.tg
[2025-07-27 21:38:22] 2025-07-28 01:37:43,060 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 21:38:22] 2025-07-28 01:37:43,060 | INFO     | summary of transferred files:
[2025-07-27 21:38:22] 2025-07-28 01:37:43,060 | INFO     |  -- lfn=log.45743349._054130.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 21:38:22] 2025-07-28 01:37:43,060 | INFO     | stage-out finished correctly
[2025-07-27 21:38:22] 2025-07-28 01:37:43,150 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 21:38:22] 2025-07-28 01:37:44,198 | INFO     | monitor loop #376: job 0:6747599747 is in state 'finished'
[2025-07-27 21:38:22] 2025-07-28 01:37:44,198 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:38:22] 2025-07-28 01:37:45,400 | INFO     | job 6747599747 has state=finished
[2025-07-27 21:38:22] 2025-07-28 01:37:45,401 | INFO     | preparing for final server update for job 6747599747 in state='finished'
[2025-07-27 21:38:22] 2025-07-28 01:37:45,401 | INFO     | this job has now completed (state=finished)
[2025-07-27 21:38:22] 2025-07-28 01:37:45,401 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 21:38:22] 2025-07-28 01:37:45,401 | INFO     | log transfer has been attempted: DONE
[2025-07-27 21:38:22] 2025-07-28 01:37:45,401 | INFO     | job 6747599747 has finished - writing final server update
[2025-07-27 21:38:22] 2025-07-28 01:37:45,402 | INFO     | total number of processed events: 400 (read)
[2025-07-27 21:38:22] 2025-07-28 01:37:45,404 | INFO     | executing command: lscpu
[2025-07-27 21:38:22] 2025-07-28 01:37:45,472 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 21:38:22] 2025-07-28 01:37:46,702 | INFO     | monitor loop #377: job 0:6747599747 is in state 'finished'
[2025-07-27 21:38:22] 2025-07-28 01:37:46,702 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:38:22] 2025-07-28 01:37:49,206 | INFO     | monitor loop #378: job 0:6747599747 is in state 'finished'
[2025-07-27 21:38:22] 2025-07-28 01:37:49,206 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:38:22] 2025-07-28 01:37:50,420 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 21:38:22] 2025-07-28 01:37:50,424 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3247.2585
[2025-07-27 21:38:22] 2025-07-28 01:37:50,438 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6747599747/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 21:38:22] 2025-07-28 01:37:50,439 | INFO     | extracted standard info from prmon json
[2025-07-27 21:38:22] 2025-07-28 01:37:50,439 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 21:38:22] 2025-07-28 01:37:50,440 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 21:38:22] 2025-07-28 01:37:50,440 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 21:38:22] 2025-07-28 01:37:50,440 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 21:38:22] 2025-07-28 01:37:50,442 | INFO     | fitting pss+swap vs Time
[2025-07-27 21:38:22] 2025-07-28 01:37:50,442 | INFO     | sum of square deviations: 136095575.0
[2025-07-27 21:38:22] 2025-07-28 01:37:50,442 | INFO     | sum of deviations: 1468623159.4999998
[2025-07-27 21:38:22] 2025-07-28 01:37:50,442 | INFO     | mean x: 1753664232.5
[2025-07-27 21:38:22] 2025-07-28 01:37:50,442 | INFO     | mean y: 2179454.9342105263
[2025-07-27 21:38:22] 2025-07-28 01:37:50,442 | INFO     | -- intersect: -18921814994.086575
[2025-07-27 21:38:22] 2025-07-28 01:37:50,442 | INFO     | intersect: -18921814994.086575
[2025-07-27 21:38:22] 2025-07-28 01:37:50,443 | INFO     | chi2: 0.019038009319061324
[2025-07-27 21:38:22] 2025-07-28 01:37:50,443 | INFO     | -- intersect: -18921814994.086575
[2025-07-27 21:38:22] 2025-07-28 01:37:50,443 | INFO     | current memory leak: 10.79 B/s (using 76 data points, chi2=0.02)
[2025-07-27 21:38:22] 2025-07-28 01:37:50,443 | INFO     | could have reported an average CPU frequency of 3229 MHz (6 samples)
[2025-07-27 21:38:22] 2025-07-28 01:37:50,443 | INFO     | ..............................
[2025-07-27 21:38:22] 2025-07-28 01:37:50,443 | INFO     | . Timing measurements:
[2025-07-27 21:38:22] 2025-07-28 01:37:50,443 | INFO     | . get job = 0 s
[2025-07-27 21:38:22] 2025-07-28 01:37:50,443 | INFO     | . initial setup = 2 s
[2025-07-27 21:38:22] 2025-07-28 01:37:50,443 | INFO     | . payload setup = 8 s
[2025-07-27 21:38:22] 2025-07-28 01:37:50,444 | INFO     | . stage-in = 0 s
[2025-07-27 21:38:22] 2025-07-28 01:37:50,444 | INFO     | . payload execution = 5024 s
[2025-07-27 21:38:22] 2025-07-28 01:37:50,444 | INFO     | . stage-out = 0 s
[2025-07-27 21:38:22] 2025-07-28 01:37:50,444 | INFO     | . log creation = 0 s
[2025-07-27 21:38:22] 2025-07-28 01:37:50,444 | INFO     | ..............................
[2025-07-27 21:38:22] 2025-07-28 01:37:50,521 | INFO     | 
[2025-07-27 21:38:22] 2025-07-28 01:37:50,521 | INFO     | job summary report
[2025-07-27 21:38:22] 2025-07-28 01:37:50,521 | INFO     | --------------------------------------------------
[2025-07-27 21:38:22] 2025-07-28 01:37:50,521 | INFO     | PanDA job id: 6747599747
[2025-07-27 21:38:22] 2025-07-28 01:37:50,521 | INFO     | task id: 45743349
[2025-07-27 21:38:22] 2025-07-28 01:37:50,521 | INFO     | errors: (none)
[2025-07-27 21:38:22] 2025-07-28 01:37:50,521 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 21:38:22] 2025-07-28 01:37:50,521 | INFO     | pilot state: finished 
[2025-07-27 21:38:22] 2025-07-28 01:37:50,521 | INFO     | transexitcode: 0
[2025-07-27 21:38:22] 2025-07-28 01:37:50,521 | INFO     | exeerrorcode: 0
[2025-07-27 21:38:22] 2025-07-28 01:37:50,521 | INFO     | exeerrordiag: 
[2025-07-27 21:38:22] 2025-07-28 01:37:50,522 | INFO     | exitcode: 0
[2025-07-27 21:38:22] 2025-07-28 01:37:50,522 | INFO     | exitmsg: OK
[2025-07-27 21:38:22] 2025-07-28 01:37:50,522 | INFO     | cpuconsumptiontime: 37127 s
[2025-07-27 21:38:22] 2025-07-28 01:37:50,522 | INFO     | nevents: 400
[2025-07-27 21:38:22] 2025-07-28 01:37:50,522 | INFO     | neventsw: 0
[2025-07-27 21:38:22] 2025-07-28 01:37:50,522 | INFO     | pid: 990082
[2025-07-27 21:38:22] 2025-07-28 01:37:50,522 | INFO     | pgrp: 990082
[2025-07-27 21:38:22] 2025-07-28 01:37:50,522 | INFO     | corecount: 8
[2025-07-27 21:38:22] 2025-07-28 01:37:50,522 | INFO     | event service: False
[2025-07-27 21:38:22] 2025-07-28 01:37:50,522 | INFO     | sizes: {0: 2397424, 6: 2397686, 11: 2397714, 5036: 2424017, 5037: 2433071, 5044: 2433209}
[2025-07-27 21:38:22] 2025-07-28 01:37:50,522 | INFO     | --------------------------------------------------
[2025-07-27 21:38:22] 2025-07-28 01:37:50,522 | INFO     | 
[2025-07-27 21:38:22] 2025-07-28 01:37:50,522 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-27 21:38:22] 2025-07-28 01:37:50,547 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 21:38:22] 2025-07-28 01:37:50,547 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 21:38:22] 2025-07-28 01:37:50,547 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 21:38:22] 2025-07-28 01:37:50,547 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 21:38:22] 2025-07-28 01:37:50,548 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 21:38:22] 2025-07-28 01:37:50,548 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 21:38:22] 2025-07-28 01:37:50,548 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 21:38:22] 2025-07-28 01:37:50,548 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 21:38:22] 2025-07-28 01:37:50,548 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 21:38:22] 2025-07-28 01:37:50,548 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 21:38:22] 2025-07-28 01:37:50,548 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 21:38:22] 2025-07-28 01:37:50,548 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 21:38:22] 2025-07-28 01:37:50,548 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 21:38:22] 2025-07-28 01:37:50,548 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 21:38:22] 2025-07-28 01:37:50,548 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 21:38:22] 2025-07-28 01:37:50,548 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 21:38:22] 2025-07-28 01:37:50,548 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 21:38:22] 2025-07-28 01:37:50,548 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 21:38:22] 2025-07-28 01:37:50,548 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 21:38:22] 2025-07-28 01:37:50,549 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 21:38:22] 2025-07-28 01:37:50,549 | INFO     | job 6747599747 has completed (purged errors)
[2025-07-27 21:38:22] 2025-07-28 01:37:50,549 | INFO     | overall cleanup function is called
[2025-07-27 21:38:22] 2025-07-28 01:37:51,557 | INFO     | --- collectZombieJob: --- 10, [990082]
[2025-07-27 21:38:22] 2025-07-28 01:37:51,557 | INFO     | zombie collector waiting for pid 990082
[2025-07-27 21:38:22] 2025-07-28 01:37:51,557 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 21:38:22] 2025-07-28 01:37:51,557 | INFO     | collected zombie processes
[2025-07-27 21:38:22] 2025-07-28 01:37:51,557 | INFO     | will attempt to kill all subprocesses of pid=990082
[2025-07-27 21:38:22] 2025-07-28 01:37:51,828 | INFO     | process IDs to be killed: [990082] (in reverse order)
[2025-07-27 21:38:22] 2025-07-28 01:37:51,931 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 21:38:22] 2025-07-28 01:37:51,932 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 21:38:22] 2025-07-28 01:37:51,946 | INFO     | did not find any defunct processes belonging to 990082
[2025-07-27 21:38:22] 2025-07-28 01:37:51,960 | INFO     | did not find any defunct processes belonging to 990082
[2025-07-27 21:38:22] 2025-07-28 01:37:51,960 | INFO     | ready for new job
[2025-07-27 21:38:22] 2025-07-28 01:37:51,960 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 21:38:22] 2025-07-28 01:37:51,962 | INFO     | ***************************************
[2025-07-27 21:38:22] 2025-07-28 01:37:51,962 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 21:38:22] 2025-07-28 01:37:51,962 | INFO     | ***************************************
[2025-07-27 21:38:22] 2025-07-28 01:37:51,962 | INFO     | 
[2025-07-27 21:38:22] 2025-07-28 01:37:51,979 | INFO     | architecture information:
[2025-07-27 21:38:22] 2025-07-28 01:37:51,980 | INFO     | executing command: cat /etc/os-release
[2025-07-27 21:38:22] 2025-07-28 01:37:52,002 | INFO     | cat /etc/os-release:
[2025-07-27 21:38:22] NAME="CentOS Linux"
[2025-07-27 21:38:22] VERSION="7 (Core)"
[2025-07-27 21:38:22] ID="centos"
[2025-07-27 21:38:22] ID_LIKE="rhel fedora"
[2025-07-27 21:38:22] VERSION_ID="7"
[2025-07-27 21:38:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 21:38:22] ANSI_COLOR="0;31"
[2025-07-27 21:38:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 21:38:22] HOME_URL="https://www.centos.org/"
[2025-07-27 21:38:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 21:38:22] 
[2025-07-27 21:38:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 21:38:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 21:38:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 21:38:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 21:38:22] 
[2025-07-27 21:38:22] 2025-07-28 01:37:52,003 | INFO     | ***************************************
[2025-07-27 21:38:22] 2025-07-28 01:37:52,505 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-27 21:38:22] 2025-07-28 01:37:52,528 | INFO     | sufficient remaining disk space (86305144832 B)
[2025-07-27 21:38:22] 2025-07-28 01:37:52,529 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 21:38:22] 2025-07-28 01:37:52,529 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 21:38:22] 2025-07-28 01:37:52,529 | INFO     | update_server=False
[2025-07-27 21:38:22] 2025-07-28 01:37:52,529 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 21:38:22] 2025-07-28 01:37:52,715 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:38:22] 2025-07-28 01:37:52,715 | INFO     | aborting loop
[2025-07-27 21:38:22] 2025-07-28 01:37:52,892 | INFO     | all job control threads have been joined
[2025-07-27 21:38:22] 2025-07-28 01:37:53,389 | INFO     | all data control threads have been joined
[2025-07-27 21:38:22] 2025-07-28 01:37:53,534 | INFO     | [job] retrieve thread has finished
[2025-07-27 21:38:22] 2025-07-28 01:37:53,667 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 21:38:22] 2025-07-28 01:37:53,713 | INFO     | all payload control threads have been joined
[2025-07-27 21:38:22] 2025-07-28 01:37:53,716 | INFO     | [job] job monitor thread has finished
[2025-07-27 21:38:22] 2025-07-28 01:37:53,743 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 21:38:22] 2025-07-28 01:37:53,754 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 21:38:22] 2025-07-28 01:37:53,808 | INFO     | [payload] failed_post thread has finished
[2025-07-27 21:38:22] 2025-07-28 01:37:53,898 | INFO     | [job] control thread has finished
[2025-07-27 21:38:22] 2025-07-28 01:37:53,937 | INFO     | [data] copytool_in thread has finished
[2025-07-27 21:38:22] 2025-07-28 01:37:54,394 | INFO     | [data] control thread has finished
[2025-07-27 21:38:22] 2025-07-28 01:37:54,437 | INFO     | [job] validate thread has finished
[2025-07-27 21:38:22] 2025-07-28 01:37:54,437 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 21:38:22] 2025-07-28 01:37:54,439 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 21:38:22] 2025-07-28 01:37:54,534 | INFO     | [payload] validate_post thread has finished
[2025-07-27 21:38:22] 2025-07-28 01:37:54,565 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 21:38:22] 2025-07-28 01:37:54,720 | INFO     | [payload] control thread has finished
[2025-07-27 21:38:22] 2025-07-28 01:37:55,532 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:38:22] 2025-07-28 01:37:55,673 | INFO     | [data] copytool_out thread has finished
[2025-07-27 21:38:22] 2025-07-28 01:37:56,538 | INFO     | [job] queue monitor thread has finished
[2025-07-27 21:38:22] 2025-07-28 01:37:57,745 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 21:38:22] 2025-07-28 01:37:58,108 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139867305178944)>', '<ExcThread(monitor, started 139867031836416)>']
[2025-07-27 21:38:22] 2025-07-28 01:38:03,133 | INFO     | all workflow threads have been joined
[2025-07-27 21:38:22] 2025-07-28 01:38:03,133 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 21:38:22] 2025-07-28 01:38:03,133 | INFO     | traces error code: 0
[2025-07-27 21:38:22] 2025-07-28 01:38:03,133 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 21:38:22] 2025-07-28 01:38:22,064 | INFO     | PID=980792 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 21:38:22] 2025-07-28 01:38:22,064 | INFO     | .. there are 10 such processes running
[2025-07-27 21:38:22] 2025-07-28 01:38:22,065 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 21:38:22] 2025-07-28 01:38:22,065 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 21:38:22] 2025-07-28 01:38:22,065 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 21:38:22] 2025-07-28 01:38:22,065 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 21:38:22] 2025-07-28 01:38:22,065 | INFO     | [monitor] control thread has ended
[2025-07-27 21:38:22] 2025-07-28 01:38:22,223 [wrapper] ==== pilot stdout END ====
[2025-07-27 21:38:22] 2025-07-28 01:38:22,226 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 21:38:22] 2025-07-28 01:38:22,228 [wrapper] pilotpid: 980792
[2025-07-27 21:38:22] 2025-07-28 01:38:22,232 [wrapper] Pilot exit status: 0
[2025-07-27 21:38:22] 2025-07-28 01:38:22,246 [wrapper] pandaids: 6747599747
[2025-07-27 21:38:22] 2025-07-28 01:38:22,329 [wrapper] cleanup supervisor_pilot 1108570 980793
[2025-07-27 21:38:22] 2025-07-28 01:38:22,332 [wrapper] Test setup, not cleaning
[2025-07-27 21:38:22] 2025-07-28 01:38:22,336 [wrapper] apfmon messages muted
[2025-07-27 21:38:22] 2025-07-28 01:38:22,340 [wrapper] ==== wrapper stdout END ====
[2025-07-27 21:38:22] 2025-07-28 01:38:22,343 [wrapper] ==== wrapper stderr END ====
[2025-07-27 21:38:22]  *** Error codes and diagnostics ***
[2025-07-27 21:38:22]     "exeErrorCode": 0,
[2025-07-27 21:38:22]     "exeErrorDiag": "",
[2025-07-27 21:38:22]     "pilotErrorCode": 0,
[2025-07-27 21:38:22]     "pilotErrorDiag": "",
[2025-07-27 21:38:22]  *** Listing of results directory ***
[2025-07-27 21:38:22] total 352268
[2025-07-27 21:38:22] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 14:41 pilot3.tar.gz
[2025-07-27 21:38:22] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 14:47 queuedata.json
[2025-07-27 21:38:22] -rwx------. 1 boincer umatlas     36292 Jul 27 14:47 runpilot2-wrapper.sh
[2025-07-27 21:38:22] -rw-r--r--. 1 boincer umatlas       100 Jul 27 20:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 21:38:22] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 20:13 run_atlas
[2025-07-27 21:38:22] -rw-r--r--. 1 boincer umatlas       105 Jul 27 20:13 job.xml
[2025-07-27 21:38:22] -rw-r--r--. 2 boincer umatlas 146861365 Jul 27 20:13 EVNT.45743347._002865.pool.root.1
[2025-07-27 21:38:22] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 20:13 start_atlas.sh
[2025-07-27 21:38:22] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 20:13 shared
[2025-07-27 21:38:22] -rw-r--r--. 2 boincer umatlas    542891 Jul 27 20:13 input.tar.gz
[2025-07-27 21:38:22] -rw-r--r--. 1 boincer umatlas         0 Jul 27 20:13 boinc_lockfile
[2025-07-27 21:38:22] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 20:13 pandaJob.out
[2025-07-27 21:38:22] -rw-------. 1 boincer umatlas    980125 Jul 27 20:13 agis_schedconf.cvmfs.json
[2025-07-27 21:38:22] -rw-------. 1 boincer umatlas   1593052 Jul 27 20:13 agis_ddmendpoints.agis.ALL.json
[2025-07-27 21:38:22] drwx------. 4 boincer umatlas      4096 Jul 27 20:13 pilot3
[2025-07-27 21:38:22] -rw-------. 1 boincer umatlas 208387006 Jul 27 21:37 HITS.45743349._054130.pool.root.1
[2025-07-27 21:38:22] -rw-r--r--. 1 boincer umatlas       529 Jul 27 21:37 boinc_task_state.xml
[2025-07-27 21:38:22] -rw-r--r--. 1 boincer umatlas      6897 Jul 27 21:37 init_data.xml
[2025-07-27 21:38:22] -rw-------. 1 boincer umatlas      1029 Jul 27 21:37 memory_monitor_summary.json
[2025-07-27 21:38:22] -rw-------. 1 boincer umatlas    303807 Jul 27 21:37 log.45743349._054130.job.log.tgz.1
[2025-07-27 21:38:22] -rw-------. 1 boincer umatlas      7767 Jul 27 21:37 heartbeat.json
[2025-07-27 21:38:22] -rw-r--r--. 1 boincer umatlas        27 Jul 27 21:38 wrapper_checkpoint.txt
[2025-07-27 21:38:22] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 21:38 boinc_mmap_file
[2025-07-27 21:38:22] -rw-------. 1 boincer umatlas       822 Jul 27 21:38 pilotlog.txt
[2025-07-27 21:38:22] -rw-------. 1 boincer umatlas        95 Jul 27 21:38 pilot_heartbeat.json
[2025-07-27 21:38:22] -rw-------. 1 boincer umatlas    495860 Jul 27 21:38 log.45743349._054130.job.log.1
[2025-07-27 21:38:22] -rw-------. 1 boincer umatlas       357 Jul 27 21:38 output.list
[2025-07-27 21:38:22] -rw-r--r--. 1 boincer umatlas       620 Jul 27 21:38 runtime_log
[2025-07-27 21:38:22] -rw-------. 1 boincer umatlas    819200 Jul 27 21:38 result.tar.gz
[2025-07-27 21:38:22] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 21:38 runtime_log.err
[2025-07-27 21:38:22] -rw-------. 1 boincer umatlas       652 Jul 27 21:38 GnXMDmmaL07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmu9VLDml51xDo.diag
[2025-07-27 21:38:22] -rw-r--r--. 1 boincer umatlas     21562 Jul 27 21:38 stderr.txt
[2025-07-27 21:38:22] HITS file was successfully produced:
[2025-07-27 21:38:22] -rw-------. 1 boincer umatlas 208387006 Jul 27 21:37 shared/HITS.pool.root.1
[2025-07-27 21:38:22]  *** Contents of shared directory: ***
[2025-07-27 21:38:22] total 348276
[2025-07-27 21:38:22] -rw-r--r--. 2 boincer umatlas 146861365 Jul 27 20:13 ATLAS.root_0
[2025-07-27 21:38:22] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 20:13 start_atlas.sh
[2025-07-27 21:38:22] -rw-r--r--. 2 boincer umatlas    542891 Jul 27 20:13 input.tar.gz
[2025-07-27 21:38:22] -rw-------. 1 boincer umatlas 208387006 Jul 27 21:37 HITS.pool.root.1
[2025-07-27 21:38:22] -rw-------. 1 boincer umatlas    819200 Jul 27 21:38 result.tar.gz
21:38:24 (976050): run_atlas exited; CPU time 37166.239976
21:38:24 (976050): called boinc_finish(0)

</stderr_txt>
]]>

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