Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:07:26 (3564217): wrapper (7.7.26015): starting
20:07:26 (3564217): wrapper: running run_atlas (--nthreads 10)
[2025-07-27 20:07:26] Arguments: --nthreads 10
[2025-07-27 20:07:26] Threads: 10
[2025-07-27 20:07:26] Checking for CVMFS
[2025-07-27 20:07:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 20:07:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 20:07:26] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 20:07:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 20:07:27] 2.13.0.0 215257 19426 288552 148828 1 337 31057646 32935936 6311 16776704 0 51719398 99.530 68799073 25237 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 20:07:27] CVMFS is ok
[2025-07-27 20:07:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 20:07:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 20:07:27] Further information can be found at the LHC@home message board.
[2025-07-27 20:07:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 20:07:27] Checking for apptainer binary...
[2025-07-27 20:07:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 20:07:27] Running /usr/bin/apptainer --version
[2025-07-27 20:07:27] apptainer version 1.4.1-1.el9
[2025-07-27 20:07:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 20:07:27] c-5-1.aglt2.org
[2025-07-27 20:07:27] apptainer works
[2025-07-27 20:07:27] Set ATHENA_PROC_NUMBER=10
[2025-07-27 20:07:27] Set ATHENA_CORE_NUMBER=10
[2025-07-27 20:07:27] Starting ATLAS job with PandaID=6747599660
[2025-07-27 20:07:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 21:48:38]  *** The last 200 lines of the pilot log: ***
[2025-07-27 21:48:38]  replicas=None
[2025-07-27 21:48:38]  scope=mc23_13p6TeV
[2025-07-27 21:48:38]  status=None
[2025-07-27 21:48:38]  status_code=0
[2025-07-27 21:48:38]  storage_token=
[2025-07-27 21:48:38]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747599660/log.45743349._054043.job.log.tgz.1
[2025-07-27 21:48:38]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9c/e2/log.45743349._054043.job.log.tgz.1
[2025-07-27 21:48:38]  workdir=None
[2025-07-27 21:48:38] ]
[2025-07-27 21:48:38] 2025-07-28 01:48:00,729 | INFO     | transferring file log.45743349._054043.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747599660/log.45743349._054043.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 21:48:38] 2025-07-28 01:48:00,730 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747599660/log.45743349._054043.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._054043.job
[2025-07-27 21:48:38] 2025-07-28 01:48:00,754 | INFO     | adding to output.list: log.45743349._054043.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9c/e2/log.45743349._054043.job.log.tg
[2025-07-27 21:48:38] 2025-07-28 01:48:00,756 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 21:48:38] 2025-07-28 01:48:00,756 | INFO     | summary of transferred files:
[2025-07-27 21:48:38] 2025-07-28 01:48:00,756 | INFO     |  -- lfn=log.45743349._054043.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 21:48:38] 2025-07-28 01:48:00,756 | INFO     | stage-out finished correctly
[2025-07-27 21:48:38] 2025-07-28 01:48:00,874 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 21:48:38] 2025-07-28 01:48:01,063 | INFO     | monitor loop #439: job 0:6747599660 is in state 'finished'
[2025-07-27 21:48:38] 2025-07-28 01:48:01,065 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:48:38] 2025-07-28 01:48:01,212 | INFO     | job 6747599660 has state=finished
[2025-07-27 21:48:38] 2025-07-28 01:48:01,212 | INFO     | preparing for final server update for job 6747599660 in state='finished'
[2025-07-27 21:48:38] 2025-07-28 01:48:01,213 | INFO     | this job has now completed (state=finished)
[2025-07-27 21:48:38] 2025-07-28 01:48:01,213 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 21:48:38] 2025-07-28 01:48:01,213 | INFO     | log transfer has been attempted: DONE
[2025-07-27 21:48:38] 2025-07-28 01:48:01,213 | INFO     | job 6747599660 has finished - writing final server update
[2025-07-27 21:48:38] 2025-07-28 01:48:01,214 | INFO     | total number of processed events: 400 (read)
[2025-07-27 21:48:38] 2025-07-28 01:48:01,214 | INFO     | executing command: lscpu
[2025-07-27 21:48:38] 2025-07-28 01:48:01,270 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 21:48:38] 2025-07-28 01:48:01,969 | INFO     | PID=3567796 has CPU usage=14.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-27 21:48:38] 2025-07-28 01:48:01,969 | INFO     | .. there are 10 such processes running
[2025-07-27 21:48:38] 2025-07-28 01:48:03,569 | INFO     | monitor loop #440: job 0:6747599660 is in state 'finished'
[2025-07-27 21:48:38] 2025-07-28 01:48:03,569 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:48:38] 2025-07-28 01:48:06,072 | INFO     | monitor loop #441: job 0:6747599660 is in state 'finished'
[2025-07-27 21:48:38] 2025-07-28 01:48:06,074 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:48:38] 2025-07-28 01:48:06,075 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 21:48:38] 2025-07-28 01:48:06,082 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2780.1399249999995
[2025-07-27 21:48:38] 2025-07-28 01:48:06,089 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747599660/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 21:48:38] 2025-07-28 01:48:06,090 | INFO     | extracted standard info from prmon json
[2025-07-27 21:48:38] 2025-07-28 01:48:06,090 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 21:48:38] 2025-07-28 01:48:06,090 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 21:48:38] 2025-07-28 01:48:06,091 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 21:48:38] 2025-07-28 01:48:06,091 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 21:48:38] 2025-07-28 01:48:06,094 | INFO     | fitting pss+swap vs Time
[2025-07-27 21:48:38] 2025-07-28 01:48:06,094 | INFO     | sum of square deviations: 241429643.0
[2025-07-27 21:48:38] 2025-07-28 01:48:06,094 | INFO     | sum of deviations: -4604825919.499999
[2025-07-27 21:48:38] 2025-07-28 01:48:06,095 | INFO     | mean x: 1753664369.5
[2025-07-27 21:48:38] 2025-07-28 01:48:06,095 | INFO     | mean y: 2312578.467391304
[2025-07-27 21:48:38] 2025-07-28 01:48:06,095 | INFO     | -- intersect: 33450231576.455654
[2025-07-27 21:48:38] 2025-07-28 01:48:06,095 | INFO     | intersect: 33450231576.455654
[2025-07-27 21:48:38] 2025-07-28 01:48:06,095 | INFO     | chi2: 0.14044217733884767
[2025-07-27 21:48:38] 2025-07-28 01:48:06,096 | INFO     | -- intersect: 33450231576.455654
[2025-07-27 21:48:38] 2025-07-28 01:48:06,096 | INFO     | current memory leak: -19.07 B/s (using 92 data points, chi2=0.14)
[2025-07-27 21:48:38] 2025-07-28 01:48:06,096 | INFO     | could have reported an average CPU frequency of 2691 MHz (7 samples)
[2025-07-27 21:48:38] 2025-07-28 01:48:06,097 | INFO     | ..............................
[2025-07-27 21:48:38] 2025-07-28 01:48:06,097 | INFO     | . Timing measurements:
[2025-07-27 21:48:38] 2025-07-28 01:48:06,097 | INFO     | . get job = 0 s
[2025-07-27 21:48:38] 2025-07-28 01:48:06,097 | INFO     | . initial setup = 2 s
[2025-07-27 21:48:38] 2025-07-28 01:48:06,097 | INFO     | . payload setup = 8 s
[2025-07-27 21:48:38] 2025-07-28 01:48:06,097 | INFO     | . stage-in = 0 s
[2025-07-27 21:48:38] 2025-07-28 01:48:06,097 | INFO     | . payload execution = 5991 s
[2025-07-27 21:48:38] 2025-07-28 01:48:06,097 | INFO     | . stage-out = 1 s
[2025-07-27 21:48:38] 2025-07-28 01:48:06,097 | INFO     | . log creation = 0 s
[2025-07-27 21:48:38] 2025-07-28 01:48:06,097 | INFO     | ..............................
[2025-07-27 21:48:38] 2025-07-28 01:48:06,222 | INFO     | 
[2025-07-27 21:48:38] 2025-07-28 01:48:06,223 | INFO     | job summary report
[2025-07-27 21:48:38] 2025-07-28 01:48:06,223 | INFO     | --------------------------------------------------
[2025-07-27 21:48:38] 2025-07-28 01:48:06,223 | INFO     | PanDA job id: 6747599660
[2025-07-27 21:48:38] 2025-07-28 01:48:06,223 | INFO     | task id: 45743349
[2025-07-27 21:48:38] 2025-07-28 01:48:06,223 | INFO     | errors: (none)
[2025-07-27 21:48:38] 2025-07-28 01:48:06,223 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 21:48:38] 2025-07-28 01:48:06,223 | INFO     | pilot state: finished 
[2025-07-27 21:48:38] 2025-07-28 01:48:06,223 | INFO     | transexitcode: 0
[2025-07-27 21:48:38] 2025-07-28 01:48:06,224 | INFO     | exeerrorcode: 0
[2025-07-27 21:48:38] 2025-07-28 01:48:06,224 | INFO     | exeerrordiag: 
[2025-07-27 21:48:38] 2025-07-28 01:48:06,224 | INFO     | exitcode: 0
[2025-07-27 21:48:38] 2025-07-28 01:48:06,224 | INFO     | exitmsg: OK
[2025-07-27 21:48:38] 2025-07-28 01:48:06,224 | INFO     | cpuconsumptiontime: 54571 s
[2025-07-27 21:48:38] 2025-07-28 01:48:06,224 | INFO     | nevents: 400
[2025-07-27 21:48:38] 2025-07-28 01:48:06,224 | INFO     | neventsw: 0
[2025-07-27 21:48:38] 2025-07-28 01:48:06,224 | INFO     | pid: 3575605
[2025-07-27 21:48:38] 2025-07-28 01:48:06,224 | INFO     | pgrp: 3575605
[2025-07-27 21:48:38] 2025-07-28 01:48:06,224 | INFO     | corecount: 10
[2025-07-27 21:48:38] 2025-07-28 01:48:06,224 | INFO     | event service: False
[2025-07-27 21:48:38] 2025-07-28 01:48:06,225 | INFO     | sizes: {0: 2396645, 1: 2397501, 6: 2397763, 12: 2397791, 6003: 2424462, 6005: 2433644, 6010: 2433782}
[2025-07-27 21:48:38] 2025-07-28 01:48:06,225 | INFO     | --------------------------------------------------
[2025-07-27 21:48:38] 2025-07-28 01:48:06,225 | INFO     | 
[2025-07-27 21:48:38] 2025-07-28 01:48:06,225 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 21:48:38] 2025-07-28 01:48:06,250 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 21:48:38] 2025-07-28 01:48:06,250 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 21:48:38] 2025-07-28 01:48:06,251 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 21:48:38] 2025-07-28 01:48:06,251 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 21:48:38] 2025-07-28 01:48:06,251 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 21:48:38] 2025-07-28 01:48:06,251 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 21:48:38] 2025-07-28 01:48:06,251 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 21:48:38] 2025-07-28 01:48:06,251 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 21:48:38] 2025-07-28 01:48:06,252 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 21:48:38] 2025-07-28 01:48:06,252 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 21:48:38] 2025-07-28 01:48:06,252 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 21:48:38] 2025-07-28 01:48:06,252 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 21:48:38] 2025-07-28 01:48:06,252 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 21:48:38] 2025-07-28 01:48:06,252 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 21:48:38] 2025-07-28 01:48:06,253 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 21:48:38] 2025-07-28 01:48:06,253 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 21:48:38] 2025-07-28 01:48:06,253 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 21:48:38] 2025-07-28 01:48:06,253 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 21:48:38] 2025-07-28 01:48:06,253 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 21:48:38] 2025-07-28 01:48:06,253 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 21:48:38] 2025-07-28 01:48:06,254 | INFO     | job 6747599660 has completed (purged errors)
[2025-07-27 21:48:38] 2025-07-28 01:48:06,254 | INFO     | overall cleanup function is called
[2025-07-27 21:48:38] 2025-07-28 01:48:07,262 | INFO     | --- collectZombieJob: --- 10, [3575605]
[2025-07-27 21:48:38] 2025-07-28 01:48:07,263 | INFO     | zombie collector waiting for pid 3575605
[2025-07-27 21:48:38] 2025-07-28 01:48:07,263 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 21:48:38] 2025-07-28 01:48:07,263 | INFO     | collected zombie processes
[2025-07-27 21:48:38] 2025-07-28 01:48:07,263 | INFO     | will attempt to kill all subprocesses of pid=3575605
[2025-07-27 21:48:38] 2025-07-28 01:48:07,552 | INFO     | process IDs to be killed: [3575605] (in reverse order)
[2025-07-27 21:48:38] 2025-07-28 01:48:07,634 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 21:48:38] 2025-07-28 01:48:07,635 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 21:48:38] 2025-07-28 01:48:07,644 | INFO     | did not find any defunct processes belonging to 3575605
[2025-07-27 21:48:38] 2025-07-28 01:48:07,654 | INFO     | did not find any defunct processes belonging to 3575605
[2025-07-27 21:48:38] 2025-07-28 01:48:07,654 | INFO     | ready for new job
[2025-07-27 21:48:38] 2025-07-28 01:48:07,655 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 21:48:38] 2025-07-28 01:48:07,656 | INFO     | ***************************************
[2025-07-27 21:48:38] 2025-07-28 01:48:07,656 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 21:48:38] 2025-07-28 01:48:07,656 | INFO     | ***************************************
[2025-07-27 21:48:38] 2025-07-28 01:48:07,657 | INFO     | 
[2025-07-27 21:48:38] 2025-07-28 01:48:07,670 | INFO     | architecture information:
[2025-07-27 21:48:38] 2025-07-28 01:48:07,671 | INFO     | executing command: cat /etc/os-release
[2025-07-27 21:48:38] 2025-07-28 01:48:07,688 | INFO     | cat /etc/os-release:
[2025-07-27 21:48:38] NAME="CentOS Linux"
[2025-07-27 21:48:38] VERSION="7 (Core)"
[2025-07-27 21:48:38] ID="centos"
[2025-07-27 21:48:38] ID_LIKE="rhel fedora"
[2025-07-27 21:48:38] VERSION_ID="7"
[2025-07-27 21:48:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 21:48:38] ANSI_COLOR="0;31"
[2025-07-27 21:48:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 21:48:38] HOME_URL="https://www.centos.org/"
[2025-07-27 21:48:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 21:48:38] 
[2025-07-27 21:48:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 21:48:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 21:48:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 21:48:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 21:48:38] 
[2025-07-27 21:48:38] 2025-07-28 01:48:07,689 | INFO     | ***************************************
[2025-07-27 21:48:38] 2025-07-28 01:48:08,192 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 21:48:38] 2025-07-28 01:48:08,211 | INFO     | sufficient remaining disk space (76610011136 B)
[2025-07-27 21:48:38] 2025-07-28 01:48:08,212 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 21:48:38] 2025-07-28 01:48:08,212 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 21:48:38] 2025-07-28 01:48:08,212 | INFO     | update_server=False
[2025-07-27 21:48:38] 2025-07-28 01:48:08,212 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 21:48:38] 2025-07-28 01:48:08,212 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:48:38] 2025-07-28 01:48:08,485 | INFO     | all job control threads have been joined
[2025-07-27 21:48:38] 2025-07-28 01:48:08,577 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 21:48:38] 2025-07-28 01:48:08,578 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 21:48:38] 2025-07-28 01:48:08,578 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:48:38] 2025-07-28 01:48:08,578 | INFO     | will abort loop
[2025-07-27 21:48:38] 2025-07-28 01:48:08,885 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 21:48:38] 2025-07-28 01:48:08,979 | INFO     | all data control threads have been joined
[2025-07-27 21:48:38] 2025-07-28 01:48:09,216 | INFO     | [job] retrieve thread has finished
[2025-07-27 21:48:38] 2025-07-28 01:48:09,217 | INFO     | [job] queue monitor thread has finished
[2025-07-27 21:48:38] 2025-07-28 01:48:09,310 | INFO     | [payload] failed_post thread has finished
[2025-07-27 21:48:38] 2025-07-28 01:48:09,382 | INFO     | all payload control threads have been joined
[2025-07-27 21:48:38] 2025-07-28 01:48:09,414 | INFO     | [data] copytool_in thread has finished
[2025-07-27 21:48:38] 2025-07-28 01:48:09,491 | INFO     | [job] control thread has finished
[2025-07-27 21:48:38] 2025-07-28 01:48:09,583 | INFO     | [job] job monitor thread has finished
[2025-07-27 21:48:38] 2025-07-28 01:48:09,984 | INFO     | [data] control thread has finished
[2025-07-27 21:48:38] 2025-07-28 01:48:10,079 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 21:48:38] 2025-07-28 01:48:10,118 | INFO     | [payload] validate_post thread has finished
[2025-07-27 21:48:38] 2025-07-28 01:48:10,259 | INFO     | [job] validate thread has finished
[2025-07-27 21:48:38] 2025-07-28 01:48:10,308 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 21:48:38] 2025-07-28 01:48:10,387 | INFO     | [payload] control thread has finished
[2025-07-27 21:48:38] 2025-07-28 01:48:10,714 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 21:48:38] 2025-07-28 01:48:10,890 | INFO     | [data] copytool_out thread has finished
[2025-07-27 21:48:38] 2025-07-28 01:48:11,498 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 21:48:38] 2025-07-28 01:48:15,504 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 21:48:38] 2025-07-28 01:48:19,009 | INFO     | job.realtimelogging is not enabled
[2025-07-27 21:48:38] 2025-07-28 01:48:20,014 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 21:48:38] 2025-07-28 01:48:20,368 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140037955589952)>', '<ExcThread(monitor, started 140037316396800)>']
[2025-07-27 21:48:38] 2025-07-28 01:48:25,394 | INFO     | all workflow threads have been joined
[2025-07-27 21:48:38] 2025-07-28 01:48:25,395 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 21:48:38] 2025-07-28 01:48:25,395 | INFO     | traces error code: 0
[2025-07-27 21:48:38] 2025-07-28 01:48:25,395 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 21:48:38] 2025-07-28 01:48:38,472 | INFO     | PID=3567796 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 21:48:38] 2025-07-28 01:48:38,473 | INFO     | .. there are 10 such processes running
[2025-07-27 21:48:38] 2025-07-28 01:48:38,475 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 21:48:38] 2025-07-28 01:48:38,475 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 21:48:38] 2025-07-28 01:48:38,475 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 21:48:38] 2025-07-28 01:48:38,475 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 21:48:38] 2025-07-28 01:48:38,475 | INFO     | [monitor] control thread has ended
[2025-07-27 21:48:38] 2025-07-28 01:48:38,674 [wrapper] ==== pilot stdout END ====
[2025-07-27 21:48:38] 2025-07-28 01:48:38,677 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 21:48:38] 2025-07-28 01:48:38,681 [wrapper] pilotpid: 3567796
[2025-07-27 21:48:38] 2025-07-28 01:48:38,684 [wrapper] Pilot exit status: 0
[2025-07-27 21:48:38] 2025-07-28 01:48:38,698 [wrapper] pandaids: 6747599660
[2025-07-27 21:48:38] 2025-07-28 01:48:38,758 [wrapper] cleanup supervisor_pilot 4006478 3567797
[2025-07-27 21:48:38] 2025-07-28 01:48:38,762 [wrapper] Test setup, not cleaning
[2025-07-27 21:48:38] 2025-07-28 01:48:38,766 [wrapper] apfmon messages muted
[2025-07-27 21:48:38] 2025-07-28 01:48:38,770 [wrapper] ==== wrapper stdout END ====
[2025-07-27 21:48:38] 2025-07-28 01:48:38,772 [wrapper] ==== wrapper stderr END ====
[2025-07-27 21:48:38]  *** Error codes and diagnostics ***
[2025-07-27 21:48:38]     "exeErrorCode": 0,
[2025-07-27 21:48:38]     "exeErrorDiag": "",
[2025-07-27 21:48:38]     "pilotErrorCode": 0,
[2025-07-27 21:48:38]     "pilotErrorDiag": "",
[2025-07-27 21:48:38]  *** Listing of results directory ***
[2025-07-27 21:48:38] total 397656
[2025-07-27 21:48:38] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 14:41 pilot3.tar.gz
[2025-07-27 21:48:38] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 14:45 queuedata.json
[2025-07-27 21:48:38] -rwx------. 1 boincer umatlas     36292 Jul 27 14:46 runpilot2-wrapper.sh
[2025-07-27 21:48:38] -rw-r--r--. 1 boincer umatlas       100 Jul 27 20:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 21:48:38] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 20:07 run_atlas
[2025-07-27 21:48:38] -rw-r--r--. 1 boincer umatlas       105 Jul 27 20:07 job.xml
[2025-07-27 21:48:38] -rw-r--r--. 2 boincer umatlas 189862412 Jul 27 20:07 EVNT.45743347._002860.pool.root.1
[2025-07-27 21:48:38] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 20:07 start_atlas.sh
[2025-07-27 21:48:38] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 20:07 shared
[2025-07-27 21:48:38] -rw-r--r--. 2 boincer umatlas    542889 Jul 27 20:07 input.tar.gz
[2025-07-27 21:48:38] -rw-r--r--. 1 boincer umatlas         0 Jul 27 20:07 boinc_lockfile
[2025-07-27 21:48:38] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 20:07 pandaJob.out
[2025-07-27 21:48:38] -rw-------. 1 boincer umatlas    980125 Jul 27 20:07 agis_schedconf.cvmfs.json
[2025-07-27 21:48:38] -rw-------. 1 boincer umatlas   1593052 Jul 27 20:07 agis_ddmendpoints.agis.ALL.json
[2025-07-27 21:48:38] drwx------. 4 boincer umatlas      4096 Jul 27 20:07 pilot3
[2025-07-27 21:48:38] -rw-------. 1 boincer umatlas 211625934 Jul 27 21:47 HITS.45743349._054043.pool.root.1
[2025-07-27 21:48:38] -rw-r--r--. 1 boincer umatlas       529 Jul 27 21:47 boinc_task_state.xml
[2025-07-27 21:48:38] -rw-------. 1 boincer umatlas      1039 Jul 27 21:47 memory_monitor_summary.json
[2025-07-27 21:48:38] -rw-------. 1 boincer umatlas    336234 Jul 27 21:48 log.45743349._054043.job.log.tgz.1
[2025-07-27 21:48:38] -rw-------. 1 boincer umatlas      7810 Jul 27 21:48 heartbeat.json
[2025-07-27 21:48:38] -rw-r--r--. 1 boincer umatlas      6657 Jul 27 21:48 init_data.xml
[2025-07-27 21:48:38] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 21:48 boinc_mmap_file
[2025-07-27 21:48:38] -rw-r--r--. 1 boincer umatlas        27 Jul 27 21:48 wrapper_checkpoint.txt
[2025-07-27 21:48:38] -rw-------. 1 boincer umatlas        95 Jul 27 21:48 pilot_heartbeat.json
[2025-07-27 21:48:38] -rw-------. 1 boincer umatlas       823 Jul 27 21:48 pilotlog.txt
[2025-07-27 21:48:38] -rw-------. 1 boincer umatlas    578824 Jul 27 21:48 log.45743349._054043.job.log.1
[2025-07-27 21:48:38] -rw-------. 1 boincer umatlas       357 Jul 27 21:48 output.list
[2025-07-27 21:48:38] -rw-r--r--. 1 boincer umatlas       620 Jul 27 21:48 runtime_log
[2025-07-27 21:48:38] -rw-------. 1 boincer umatlas    931840 Jul 27 21:48 result.tar.gz
[2025-07-27 21:48:38] -rw-------. 1 boincer umatlas       650 Jul 27 21:48 zwwNDmnZL07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmX9VLDmj0byQo.diag
[2025-07-27 21:48:38] -rw-r--r--. 1 boincer umatlas      8647 Jul 27 21:48 runtime_log.err
[2025-07-27 21:48:38] -rw-r--r--. 1 boincer umatlas     21927 Jul 27 21:48 stderr.txt
[2025-07-27 21:48:38] HITS file was successfully produced:
[2025-07-27 21:48:38] -rw-------. 1 boincer umatlas 211625934 Jul 27 21:47 shared/HITS.pool.root.1
[2025-07-27 21:48:38]  *** Contents of shared directory: ***
[2025-07-27 21:48:38] total 393552
[2025-07-27 21:48:38] -rw-r--r--. 2 boincer umatlas 189862412 Jul 27 20:07 ATLAS.root_0
[2025-07-27 21:48:38] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 20:07 start_atlas.sh
[2025-07-27 21:48:38] -rw-r--r--. 2 boincer umatlas    542889 Jul 27 20:07 input.tar.gz
[2025-07-27 21:48:38] -rw-------. 1 boincer umatlas 211625934 Jul 27 21:47 HITS.pool.root.1
[2025-07-27 21:48:38] -rw-------. 1 boincer umatlas    931840 Jul 27 21:48 result.tar.gz
21:49:00 (3564217): run_atlas exited; CPU time 54697.540819
21:49:00 (3564217): called boinc_finish(0)

</stderr_txt>
]]>

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