Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:00:07 (14790): wrapper (7.7.26015): starting
15:00:07 (14790): wrapper: running run_atlas (--nthreads 8)
[2025-07-28 15:00:07] Arguments: --nthreads 8
[2025-07-28 15:00:07] Threads: 8
[2025-07-28 15:00:07] Checking for CVMFS
[2025-07-28 15:00:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 15:00:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 15:00:07] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 15:00:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 15:00:07] 2.11.2.0 4026 111197 138912 148848 1 260 24245064 25165825 3899 130560 0 69366362 99.855 48146815 3292 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-07-28 15:00:07] CVMFS is ok
[2025-07-28 15:00:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 15:00:07] Checking for apptainer binary...
[2025-07-28 15:00:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 15:00:07] Running /usr/bin/apptainer --version
[2025-07-28 15:00:08] apptainer version 1.3.2-1.el7
[2025-07-28 15:00:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 15:00:09] cg-vwn218.simple-grid.lan
[2025-07-28 15:00:09] apptainer works
[2025-07-28 15:00:09] Set ATHENA_PROC_NUMBER=8
[2025-07-28 15:00:09] Set ATHENA_CORE_NUMBER=8
[2025-07-28 15:00:09] Starting ATLAS job with PandaID=6747599638
[2025-07-28 15:00:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/26 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 19:12:18]  *** The last 200 lines of the pilot log: ***
[2025-07-28 19:12:18] 2025-07-28 17:12:02,615 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 19:12:18] 2025-07-28 17:12:02,615 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 19:12:18] 2025-07-28 17:12:02,615 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 19:12:18] 2025-07-28 17:12:02,615 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 19:12:18] 2025-07-28 17:12:02,621 | INFO     | fitting pss+swap vs Time
[2025-07-28 19:12:18] 2025-07-28 17:12:02,622 | INFO     | sum of square deviations: 4672638308.0
[2025-07-28 19:12:18] 2025-07-28 17:12:02,624 | INFO     | sum of deviations: 17625703865.0
[2025-07-28 19:12:18] 2025-07-28 17:12:02,624 | INFO     | mean x: 1753715197.0
[2025-07-28 19:12:18] 2025-07-28 17:12:02,624 | INFO     | mean y: 2486389.206477733
[2025-07-28 19:12:18] 2025-07-28 17:12:02,624 | INFO     | -- intersect: -6612719558.352204
[2025-07-28 19:12:18] 2025-07-28 17:12:02,625 | INFO     | intersect: -6612719558.352204
[2025-07-28 19:12:18] 2025-07-28 17:12:02,625 | INFO     | chi2: 2.2944464103795084
[2025-07-28 19:12:18] 2025-07-28 17:12:02,626 | INFO     | sum of square deviations: 4394577280.5
[2025-07-28 19:12:18] 2025-07-28 17:12:02,628 | INFO     | sum of deviations: 33305299170.999992
[2025-07-28 19:12:18] 2025-07-28 17:12:02,628 | INFO     | mean x: 1753715044.5
[2025-07-28 19:12:18] 2025-07-28 17:12:02,628 | INFO     | mean y: 2494840.694214876
[2025-07-28 19:12:18] 2025-07-28 17:12:02,628 | INFO     | -- intersect: -13288431792.210646
[2025-07-28 19:12:18] 2025-07-28 17:12:02,628 | INFO     | intersect: -13288431792.210646
[2025-07-28 19:12:18] 2025-07-28 17:12:02,629 | INFO     | chi2: 1.5250887309957568
[2025-07-28 19:12:18] 2025-07-28 17:12:02,629 | INFO     | current chi2=1.5250887309957568 (change=33.53129870034739 %)
[2025-07-28 19:12:18] 2025-07-28 17:12:02,629 | INFO     | sum of square deviations: 4127772278.0
[2025-07-28 19:12:18] 2025-07-28 17:12:02,631 | INFO     | sum of deviations: 32270578984.999992
[2025-07-28 19:12:18] 2025-07-28 17:12:02,632 | INFO     | mean x: 1753714892.0
[2025-07-28 19:12:18] 2025-07-28 17:12:02,632 | INFO     | mean y: 2494249.189873418
[2025-07-28 19:12:18] 2025-07-28 17:12:02,632 | INFO     | -- intersect: -13707902334.721855
[2025-07-28 19:12:18] 2025-07-28 17:12:02,632 | INFO     | intersect: -13707902334.721855
[2025-07-28 19:12:18] 2025-07-28 17:12:02,632 | INFO     | chi2: 1.5258274871378037
[2025-07-28 19:12:18] 2025-07-28 17:12:02,632 | INFO     | current chi2=1.5258274871378037 (change=-0.04844020725040271 %)
[2025-07-28 19:12:18] 2025-07-28 17:12:02,633 | INFO     | right removable region: 236
[2025-07-28 19:12:18] 2025-07-28 17:12:02,633 | INFO     | sum of square deviations: 4394577280.5
[2025-07-28 19:12:18] 2025-07-28 17:12:02,635 | INFO     | sum of deviations: -20302593095.0
[2025-07-28 19:12:18] 2025-07-28 17:12:02,635 | INFO     | mean x: 1753715349.5
[2025-07-28 19:12:18] 2025-07-28 17:12:02,635 | INFO     | mean y: 2507005.0330578513
[2025-07-28 19:12:18] 2025-07-28 17:12:02,635 | INFO     | -- intersect: 8104530674.828029
[2025-07-28 19:12:18] 2025-07-28 17:12:02,635 | INFO     | intersect: 8104530674.828029
[2025-07-28 19:12:18] 2025-07-28 17:12:02,636 | INFO     | chi2: 0.8654577798678651
[2025-07-28 19:12:18] 2025-07-28 17:12:02,636 | INFO     | current chi2=0.8654577798678651 (change=62.280322784932 %)
[2025-07-28 19:12:18] 2025-07-28 17:12:02,637 | INFO     | sum of square deviations: 4127772278.0
[2025-07-28 19:12:18] 2025-07-28 17:12:02,638 | INFO     | sum of deviations: -17144526226.999998
[2025-07-28 19:12:18] 2025-07-28 17:12:02,639 | INFO     | mean x: 1753715502.0
[2025-07-28 19:12:18] 2025-07-28 17:12:02,639 | INFO     | mean y: 2505168.240506329
[2025-07-28 19:12:18] 2025-07-28 17:12:02,639 | INFO     | -- intersect: 7286487760.735515
[2025-07-28 19:12:18] 2025-07-28 17:12:02,639 | INFO     | intersect: 7286487760.735515
[2025-07-28 19:12:18] 2025-07-28 17:12:02,639 | INFO     | chi2: 0.8459956386764436
[2025-07-28 19:12:18] 2025-07-28 17:12:02,639 | INFO     | current chi2=0.8459956386764436 (change=2.248768414144124 %)
[2025-07-28 19:12:18] 2025-07-28 17:12:02,640 | INFO     | left removable region: 20
[2025-07-28 19:12:18] 2025-07-28 17:12:02,640 | INFO     | sum of square deviations: 3124858590.0
[2025-07-28 19:12:18] 2025-07-28 17:12:02,642 | INFO     | sum of deviations: 6654831386.5
[2025-07-28 19:12:18] 2025-07-28 17:12:02,642 | INFO     | mean x: 1753715471.5
[2025-07-28 19:12:18] 2025-07-28 17:12:02,642 | INFO     | mean y: 2508643.3935185187
[2025-07-28 19:12:18] 2025-07-28 17:12:02,642 | INFO     | -- intersect: -3732278204.266313
[2025-07-28 19:12:18] 2025-07-28 17:12:02,642 | INFO     | intersect: -3732278204.266313
[2025-07-28 19:12:18] 2025-07-28 17:12:02,643 | INFO     | chi2: 0.0012880519536645244
[2025-07-28 19:12:18] 2025-07-28 17:12:02,643 | INFO     | -- intersect: -3732278204.266313
[2025-07-28 19:12:18] 2025-07-28 17:12:02,643 | INFO     | current memory leak: 2.13 B/s (using 216 data points, chi2=0.00)
[2025-07-28 19:12:18] 2025-07-28 17:12:02,644 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-07-28 19:12:18] 2025-07-28 17:12:02,644 | INFO     | ..............................
[2025-07-28 19:12:18] 2025-07-28 17:12:02,644 | INFO     | . Timing measurements:
[2025-07-28 19:12:18] 2025-07-28 17:12:02,644 | INFO     | . get job = 0 s
[2025-07-28 19:12:18] 2025-07-28 17:12:02,644 | INFO     | . initial setup = 1 s
[2025-07-28 19:12:18] 2025-07-28 17:12:02,644 | INFO     | . payload setup = 19 s
[2025-07-28 19:12:18] 2025-07-28 17:12:02,644 | INFO     | . stage-in = 0 s
[2025-07-28 19:12:18] 2025-07-28 17:12:02,644 | INFO     | . payload execution = 15036 s
[2025-07-28 19:12:18] 2025-07-28 17:12:02,645 | INFO     | . stage-out = 1 s
[2025-07-28 19:12:18] 2025-07-28 17:12:02,645 | INFO     | . log creation = 0 s
[2025-07-28 19:12:18] 2025-07-28 17:12:02,645 | INFO     | ..............................
[2025-07-28 19:12:18] 2025-07-28 17:12:02,761 | INFO     | 
[2025-07-28 19:12:18] 2025-07-28 17:12:02,762 | INFO     | job summary report
[2025-07-28 19:12:18] 2025-07-28 17:12:02,762 | INFO     | --------------------------------------------------
[2025-07-28 19:12:18] 2025-07-28 17:12:02,762 | INFO     | PanDA job id: 6747599638
[2025-07-28 19:12:18] 2025-07-28 17:12:02,762 | INFO     | task id: 45743349
[2025-07-28 19:12:18] 2025-07-28 17:12:02,762 | INFO     | errors: (none)
[2025-07-28 19:12:18] 2025-07-28 17:12:02,762 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 19:12:18] 2025-07-28 17:12:02,763 | INFO     | pilot state: finished 
[2025-07-28 19:12:18] 2025-07-28 17:12:02,763 | INFO     | transexitcode: 0
[2025-07-28 19:12:18] 2025-07-28 17:12:02,763 | INFO     | exeerrorcode: 0
[2025-07-28 19:12:18] 2025-07-28 17:12:02,763 | INFO     | exeerrordiag: 
[2025-07-28 19:12:18] 2025-07-28 17:12:02,763 | INFO     | exitcode: 0
[2025-07-28 19:12:18] 2025-07-28 17:12:02,763 | INFO     | exitmsg: OK
[2025-07-28 19:12:18] 2025-07-28 17:12:02,763 | INFO     | cpuconsumptiontime: 63044 s
[2025-07-28 19:12:18] 2025-07-28 17:12:02,763 | INFO     | nevents: 400
[2025-07-28 19:12:18] 2025-07-28 17:12:02,763 | INFO     | neventsw: 0
[2025-07-28 19:12:18] 2025-07-28 17:12:02,763 | INFO     | pid: 25032
[2025-07-28 19:12:18] 2025-07-28 17:12:02,764 | INFO     | pgrp: 25032
[2025-07-28 19:12:18] 2025-07-28 17:12:02,764 | INFO     | corecount: 8
[2025-07-28 19:12:18] 2025-07-28 17:12:02,764 | INFO     | event service: False
[2025-07-28 19:12:18] 2025-07-28 17:12:02,764 | INFO     | sizes: {0: 2397299, 1: 2397498, 10: 2397760, 12: 2397788, 15059: 2428252, 15060: 2428251, 15061: 2431869, 15062: 2431925, 15071: 2432119}
[2025-07-28 19:12:18] 2025-07-28 17:12:02,764 | INFO     | --------------------------------------------------
[2025-07-28 19:12:18] 2025-07-28 17:12:02,764 | INFO     | 
[2025-07-28 19:12:18] 2025-07-28 17:12:02,764 | INFO     | executing command: ls -lF /var/lib/boinc/slots/26
[2025-07-28 19:12:18] 2025-07-28 17:12:02,788 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 19:12:18] 2025-07-28 17:12:02,788 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 19:12:18] 2025-07-28 17:12:02,788 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 19:12:18] 2025-07-28 17:12:02,789 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 19:12:18] 2025-07-28 17:12:02,789 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 19:12:18] 2025-07-28 17:12:02,789 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 19:12:18] 2025-07-28 17:12:02,789 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 19:12:18] 2025-07-28 17:12:02,789 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 19:12:18] 2025-07-28 17:12:02,789 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 19:12:18] 2025-07-28 17:12:02,789 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 19:12:18] 2025-07-28 17:12:02,789 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 19:12:18] 2025-07-28 17:12:02,790 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 19:12:18] 2025-07-28 17:12:02,790 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 19:12:18] 2025-07-28 17:12:02,790 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 19:12:18] 2025-07-28 17:12:02,790 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 19:12:18] 2025-07-28 17:12:02,790 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 19:12:18] 2025-07-28 17:12:02,790 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 19:12:18] 2025-07-28 17:12:02,790 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 19:12:18] 2025-07-28 17:12:02,790 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 19:12:18] 2025-07-28 17:12:02,791 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 19:12:18] 2025-07-28 17:12:02,791 | INFO     | job 6747599638 has completed (purged errors)
[2025-07-28 19:12:18] 2025-07-28 17:12:02,791 | INFO     | overall cleanup function is called
[2025-07-28 19:12:18] 2025-07-28 17:12:03,799 | INFO     | --- collectZombieJob: --- 10, [25032]
[2025-07-28 19:12:18] 2025-07-28 17:12:03,800 | INFO     | zombie collector waiting for pid 25032
[2025-07-28 19:12:18] 2025-07-28 17:12:03,800 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 19:12:18] 2025-07-28 17:12:03,800 | INFO     | collected zombie processes
[2025-07-28 19:12:18] 2025-07-28 17:12:03,800 | INFO     | will attempt to kill all subprocesses of pid=25032
[2025-07-28 19:12:18] 2025-07-28 17:12:03,875 | INFO     | process IDs to be killed: [25032] (in reverse order)
[2025-07-28 19:12:18] 2025-07-28 17:12:03,927 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 19:12:18] 2025-07-28 17:12:03,928 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 19:12:18] 2025-07-28 17:12:03,930 | INFO     | did not find any defunct processes belonging to 25032
[2025-07-28 19:12:18] 2025-07-28 17:12:03,932 | INFO     | did not find any defunct processes belonging to 25032
[2025-07-28 19:12:18] 2025-07-28 17:12:03,933 | INFO     | ready for new job
[2025-07-28 19:12:18] 2025-07-28 17:12:03,933 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 19:12:18] 2025-07-28 17:12:03,935 | INFO     | ***************************************
[2025-07-28 19:12:18] 2025-07-28 17:12:03,935 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 19:12:18] 2025-07-28 17:12:03,935 | INFO     | ***************************************
[2025-07-28 19:12:18] 2025-07-28 17:12:03,936 | INFO     | 
[2025-07-28 19:12:18] 2025-07-28 17:12:03,936 | INFO     | pilot is running in a VM
[2025-07-28 19:12:18] 2025-07-28 17:12:03,936 | INFO     | architecture information:
[2025-07-28 19:12:18] 2025-07-28 17:12:03,937 | INFO     | executing command: cat /etc/os-release
[2025-07-28 19:12:18] 2025-07-28 17:12:03,953 | INFO     | cat /etc/os-release:
[2025-07-28 19:12:18] NAME="CentOS Linux"
[2025-07-28 19:12:18] VERSION="7 (Core)"
[2025-07-28 19:12:18] ID="centos"
[2025-07-28 19:12:18] ID_LIKE="rhel fedora"
[2025-07-28 19:12:18] VERSION_ID="7"
[2025-07-28 19:12:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 19:12:18] ANSI_COLOR="0;31"
[2025-07-28 19:12:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 19:12:18] HOME_URL="https://www.centos.org/"
[2025-07-28 19:12:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 19:12:18] 
[2025-07-28 19:12:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 19:12:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 19:12:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 19:12:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 19:12:18] 
[2025-07-28 19:12:18] 2025-07-28 17:12:03,954 | INFO     | ***************************************
[2025-07-28 19:12:18] 2025-07-28 17:12:04,457 | INFO     | executing command: df -mP /var/lib/boinc/slots/26
[2025-07-28 19:12:18] 2025-07-28 17:12:04,477 | INFO     | sufficient remaining disk space (497621663744 B)
[2025-07-28 19:12:18] 2025-07-28 17:12:04,478 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 19:12:18] 2025-07-28 17:12:04,478 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 19:12:18] 2025-07-28 17:12:04,478 | INFO     | update_server=False
[2025-07-28 19:12:18] 2025-07-28 17:12:04,478 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 19:12:18] 2025-07-28 17:12:04,479 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-07-28 19:12:18] 2025-07-28 17:12:04,479 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 19:12:18] 2025-07-28 17:12:04,480 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 19:12:18] 2025-07-28 17:12:04,481 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 19:12:18] 2025-07-28 17:12:04,481 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 19:12:18] 2025-07-28 17:12:04,480 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 19:12:18] 2025-07-28 17:12:04,481 | INFO     | aborting loop
[2025-07-28 19:12:18] 2025-07-28 17:12:04,947 | INFO     | all payload control threads have been joined
[2025-07-28 19:12:18] 2025-07-28 17:12:05,035 | INFO     | all data control threads have been joined
[2025-07-28 19:12:18] 2025-07-28 17:12:05,484 | INFO     | [job] retrieve thread has finished
[2025-07-28 19:12:18] 2025-07-28 17:12:05,486 | INFO     | [job] queue monitor thread has finished
[2025-07-28 19:12:18] 2025-07-28 17:12:05,486 | INFO     | [job] job monitor thread has finished
[2025-07-28 19:12:18] 2025-07-28 17:12:05,530 | INFO     | [data] copytool_in thread has finished
[2025-07-28 19:12:18] 2025-07-28 17:12:05,601 | INFO     | all job control threads have been joined
[2025-07-28 19:12:18] 2025-07-28 17:12:05,777 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 19:12:18] 2025-07-28 17:12:05,950 | INFO     | [payload] control thread has finished
[2025-07-28 19:12:18] 2025-07-28 17:12:06,009 | INFO     | [payload] failed_post thread has finished
[2025-07-28 19:12:18] 2025-07-28 17:12:06,038 | INFO     | [data] control thread has finished
[2025-07-28 19:12:18] 2025-07-28 17:12:06,103 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 19:12:18] 2025-07-28 17:12:06,404 | INFO     | [job] validate thread has finished
[2025-07-28 19:12:18] 2025-07-28 17:12:06,474 | INFO     | [payload] validate_post thread has finished
[2025-07-28 19:12:18] 2025-07-28 17:12:06,607 | INFO     | [job] control thread has finished
[2025-07-28 19:12:18] 2025-07-28 17:12:06,609 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 19:12:18] 2025-07-28 17:12:06,685 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 19:12:18] 2025-07-28 17:12:06,685 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 19:12:18] 2025-07-28 17:12:07,783 | INFO     | [data] copytool_out thread has finished
[2025-07-28 19:12:18] 2025-07-28 17:12:07,881 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 19:12:18] 2025-07-28 17:12:11,888 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 19:12:18] 2025-07-28 17:12:13,526 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140481036109632)>', '<ExcThread(monitor, started 140480453011200)>']
[2025-07-28 19:12:18] 2025-07-28 17:12:14,503 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 19:12:18] 2025-07-28 17:12:14,503 | INFO     | [monitor] control thread has ended
[2025-07-28 19:12:18] 2025-07-28 17:12:18,552 | INFO     | all workflow threads have been joined
[2025-07-28 19:12:18] 2025-07-28 17:12:18,553 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 19:12:18] 2025-07-28 17:12:18,553 | INFO     | traces error code: 0
[2025-07-28 19:12:18] 2025-07-28 17:12:18,553 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 19:12:18] 2025-07-28 17:12:18,729 [wrapper] ==== pilot stdout END ====
[2025-07-28 19:12:18] 2025-07-28 17:12:18,734 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 19:12:18] 2025-07-28 17:12:18,739 [wrapper] pilotpid: 18448
[2025-07-28 19:12:18] 2025-07-28 17:12:18,745 [wrapper] Pilot exit status: 0
[2025-07-28 19:12:18] 2025-07-28 17:12:18,765 [wrapper] pandaids: 6747599638
[2025-07-28 19:12:18] 2025-07-28 17:12:18,801 [wrapper] cleanup supervisor_pilot 18800 18449
[2025-07-28 19:12:18] 2025-07-28 17:12:18,807 [wrapper] Test setup, not cleaning
[2025-07-28 19:12:18] 2025-07-28 17:12:18,816 [wrapper] apfmon messages muted
[2025-07-28 19:12:18] 2025-07-28 17:12:18,820 [wrapper] ==== wrapper stdout END ====
[2025-07-28 19:12:18] 2025-07-28 17:12:18,823 [wrapper] ==== wrapper stderr END ====
[2025-07-28 19:12:18]  *** Error codes and diagnostics ***
[2025-07-28 19:12:18]     "exeErrorCode": 0,
[2025-07-28 19:12:18]     "exeErrorDiag": "",
[2025-07-28 19:12:18]     "pilotErrorCode": 0,
[2025-07-28 19:12:18]     "pilotErrorDiag": "",
[2025-07-28 19:12:18]  *** Listing of results directory ***
[2025-07-28 19:12:18] total 396740
[2025-07-28 19:12:18] -rw-r--r--. 1 boinc boinc      5112 Jul 27 20:41 queuedata.json
[2025-07-28 19:12:18] -rw-r--r--. 1 boinc boinc    530466 Jul 27 20:41 pilot3.tar.gz
[2025-07-28 19:12:18] -rwx------. 1 boinc boinc     36292 Jul 27 20:41 runpilot2-wrapper.sh
[2025-07-28 19:12:18] -rw-r--r--. 1 boinc boinc       100 Jul 28 15:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 19:12:18] -rwxr-xr-x. 1 boinc boinc      7986 Jul 28 15:00 run_atlas
[2025-07-28 19:12:18] -rw-r--r--. 1 boinc boinc       105 Jul 28 15:00 job.xml
[2025-07-28 19:12:18] -rw-r--r--. 1 boinc boinc      6393 Jul 28 15:00 init_data.xml
[2025-07-28 19:12:18] -rw-r--r--. 2 boinc boinc 185987325 Jul 28 15:00 EVNT.45743347._002859.pool.root.1
[2025-07-28 19:12:18] -rw-r--r--. 2 boinc boinc     15095 Jul 28 15:00 start_atlas.sh
[2025-07-28 19:12:18] drwxrwx--x. 2 boinc boinc        68 Jul 28 15:00 shared
[2025-07-28 19:12:18] -rw-r--r--. 2 boinc boinc    542880 Jul 28 15:00 input.tar.gz
[2025-07-28 19:12:18] -rw-r--r--. 1 boinc boinc         0 Jul 28 15:00 boinc_lockfile
[2025-07-28 19:12:18] -rw-r--r--. 1 boinc boinc      2560 Jul 28 15:00 pandaJob.out
[2025-07-28 19:12:18] -rw-------. 1 boinc boinc    977006 Jul 28 15:00 agis_schedconf.cvmfs.json
[2025-07-28 19:12:18] drwx------. 4 boinc boinc      4096 Jul 28 15:00 pilot3
[2025-07-28 19:12:18] -rw-------. 1 boinc boinc 213011240 Jul 28 19:11 HITS.45743349._054022.pool.root.1
[2025-07-28 19:12:18] -rw-r--r--. 1 boinc boinc       531 Jul 28 19:11 boinc_task_state.xml
[2025-07-28 19:12:18] -rw-------. 1 boinc boinc        95 Jul 28 19:11 pilot_heartbeat.json
[2025-07-28 19:12:18] -rw-------. 1 boinc boinc      1021 Jul 28 19:11 memory_monitor_summary.json
[2025-07-28 19:12:18] -rw-------. 1 boinc boinc   1589827 Jul 28 19:11 agis_ddmendpoints.agis.ALL.json
[2025-07-28 19:12:18] -rw-------. 1 boinc boinc    381811 Jul 28 19:11 log.45743349._054022.job.log.tgz.1
[2025-07-28 19:12:18] -rw-------. 1 boinc boinc      7771 Jul 28 19:12 heartbeat.json
[2025-07-28 19:12:18] -rw-r--r--. 1 boinc boinc        28 Jul 28 19:12 wrapper_checkpoint.txt
[2025-07-28 19:12:18] -rw-r--r--. 1 boinc boinc      8192 Jul 28 19:12 boinc_mmap_file
[2025-07-28 19:12:18] -rw-------. 1 boinc boinc      4544 Jul 28 19:12 pilotlog.txt
[2025-07-28 19:12:18] -rw-------. 1 boinc boinc   1317707 Jul 28 19:12 log.45743349._054022.job.log.1
[2025-07-28 19:12:18] -rw-------. 1 boinc boinc       357 Jul 28 19:12 output.list
[2025-07-28 19:12:18] -rw-r--r--. 1 boinc boinc       620 Jul 28 19:12 runtime_log
[2025-07-28 19:12:18] -rw-------. 1 boinc boinc   1720320 Jul 28 19:12 result.tar.gz
[2025-07-28 19:12:18] -rw-r--r--. 1 boinc boinc      8674 Jul 28 19:12 runtime_log.err
[2025-07-28 19:12:18] -rw-------. 1 boinc boinc       657 Jul 28 19:12 pGKNDmkUL07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmL8VLDmLY1LLn.diag
[2025-07-28 19:12:18] -rw-r--r--. 1 boinc boinc     20525 Jul 28 19:12 stderr.txt
[2025-07-28 19:12:18] HITS file was successfully produced:
[2025-07-28 19:12:18] -rw-------. 1 boinc boinc 213011240 Jul 28 19:11 shared/HITS.pool.root.1
[2025-07-28 19:12:18]  *** Contents of shared directory: ***
[2025-07-28 19:12:18] total 391880
[2025-07-28 19:12:18] -rw-r--r--. 2 boinc boinc 185987325 Jul 28 15:00 ATLAS.root_0
[2025-07-28 19:12:18] -rw-r--r--. 2 boinc boinc     15095 Jul 28 15:00 start_atlas.sh
[2025-07-28 19:12:18] -rw-r--r--. 2 boinc boinc    542880 Jul 28 15:00 input.tar.gz
[2025-07-28 19:12:18] -rw-------. 1 boinc boinc 213011240 Jul 28 19:11 HITS.pool.root.1
[2025-07-28 19:12:18] -rw-------. 1 boinc boinc   1720320 Jul 28 19:12 result.tar.gz
19:12:20 (14790): run_atlas exited; CPU time 63205.701376
19:12:20 (14790): called boinc_finish(0)

</stderr_txt>
]]>

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