Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:22:20 (1681935): wrapper (7.7.26015): starting
21:22:20 (1681935): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 21:22:20] Arguments: --nthreads 12
[2025-07-27 21:22:20] Threads: 12
[2025-07-27 21:22:20] Checking for CVMFS
[2025-07-27 21:22:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 21:22:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 21:22:20] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 21:22:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 21:22:21] 2.13.0.0 1190652 19139 340556 148830 3 135 26306838 32935936 6343 16776704 0 34461735 99.717 59677851 29113 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 21:22:21] CVMFS is ok
[2025-07-27 21:22:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 21:22:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 21:22:21] Further information can be found at the LHC@home message board.
[2025-07-27 21:22:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 21:22:21] Checking for apptainer binary...
[2025-07-27 21:22:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 21:22:21] Running /usr/bin/apptainer --version
[2025-07-27 21:22:21] apptainer version 1.4.1-1.el9
[2025-07-27 21:22:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 21:22:21] c6-1-26-3.aglt2.org
[2025-07-27 21:22:21] apptainer works
[2025-07-27 21:22:21] Set ATHENA_PROC_NUMBER=12
[2025-07-27 21:22:21] Set ATHENA_CORE_NUMBER=12
[2025-07-27 21:22:21] Starting ATLAS job with PandaID=6747599585
[2025-07-27 21:22:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 22:35:42]  *** The last 200 lines of the pilot log: ***
[2025-07-27 22:35:42]  lfn=log.45743349._053969.job.log.tgz.1
[2025-07-27 22:35:42]  mtime=0
[2025-07-27 22:35:42]  protocol_id=None
[2025-07-27 22:35:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 22:35:42]  replicas=None
[2025-07-27 22:35:42]  scope=mc23_13p6TeV
[2025-07-27 22:35:42]  status=None
[2025-07-27 22:35:42]  status_code=0
[2025-07-27 22:35:42]  storage_token=
[2025-07-27 22:35:42]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747599585/log.45743349._053969.job.log.tgz.1
[2025-07-27 22:35:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5e/c0/log.45743349._053969.job.log.tgz.1
[2025-07-27 22:35:42]  workdir=None
[2025-07-27 22:35:42] ]
[2025-07-27 22:35:42] 2025-07-28 02:35:05,586 | INFO     | transferring file log.45743349._053969.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747599585/log.45743349._053969.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 22:35:42] 2025-07-28 02:35:05,587 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747599585/log.45743349._053969.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._053969.job
[2025-07-27 22:35:42] 2025-07-28 02:35:05,602 | INFO     | adding to output.list: log.45743349._053969.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5e/c0/log.45743349._053969.job.log.tg
[2025-07-27 22:35:42] 2025-07-28 02:35:05,602 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 22:35:42] 2025-07-28 02:35:05,603 | INFO     | summary of transferred files:
[2025-07-27 22:35:42] 2025-07-28 02:35:05,603 | INFO     |  -- lfn=log.45743349._053969.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 22:35:42] 2025-07-28 02:35:05,603 | INFO     | stage-out finished correctly
[2025-07-27 22:35:42] 2025-07-28 02:35:06,218 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 22:35:42] 2025-07-28 02:35:06,716 | INFO     | job 6747599585 has state=finished
[2025-07-27 22:35:42] 2025-07-28 02:35:06,716 | INFO     | preparing for final server update for job 6747599585 in state='finished'
[2025-07-27 22:35:42] 2025-07-28 02:35:06,717 | INFO     | this job has now completed (state=finished)
[2025-07-27 22:35:42] 2025-07-28 02:35:06,717 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 22:35:42] 2025-07-28 02:35:06,717 | INFO     | log transfer has been attempted: DONE
[2025-07-27 22:35:42] 2025-07-28 02:35:06,717 | INFO     | job 6747599585 has finished - writing final server update
[2025-07-27 22:35:42] 2025-07-28 02:35:06,717 | INFO     | total number of processed events: 400 (read)
[2025-07-27 22:35:42] 2025-07-28 02:35:06,718 | INFO     | executing command: lscpu
[2025-07-27 22:35:42] 2025-07-28 02:35:06,768 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 22:35:42] 2025-07-28 02:35:09,914 | WARNING  | process 1692797 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 22:35:42] 2025-07-28 02:35:09,914 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747599585/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 22:35:42] 2025-07-28 02:35:10,115 | INFO     | number of running child processes to parent process 1692797: 1
[2025-07-27 22:35:42] 2025-07-28 02:35:10,115 | INFO     | maximum number of monitored processes: 6
[2025-07-27 22:35:42] 2025-07-28 02:35:10,256 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 22:35:42] 2025-07-28 02:35:10,258 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2676.580857142857
[2025-07-27 22:35:42] 2025-07-28 02:35:10,279 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747599585/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 22:35:42] 2025-07-28 02:35:10,279 | INFO     | extracted standard info from prmon json
[2025-07-27 22:35:42] 2025-07-28 02:35:10,279 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 22:35:42] 2025-07-28 02:35:10,280 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 22:35:42] 2025-07-28 02:35:10,280 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 22:35:42] 2025-07-28 02:35:10,280 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 22:35:42] 2025-07-28 02:35:10,281 | INFO     | fitting pss+swap vs Time
[2025-07-27 22:35:42] 2025-07-28 02:35:10,282 | INFO     | sum of square deviations: 81266640.0
[2025-07-27 22:35:42] 2025-07-28 02:35:10,282 | INFO     | sum of deviations: -11707807683.5
[2025-07-27 22:35:42] 2025-07-28 02:35:10,282 | INFO     | mean x: 1753668006.5
[2025-07-27 22:35:42] 2025-07-28 02:35:10,282 | INFO     | mean y: 2639722.171875
[2025-07-27 22:35:42] 2025-07-28 02:35:10,282 | INFO     | -- intersect: 252647608934.73965
[2025-07-27 22:35:42] 2025-07-28 02:35:10,282 | INFO     | intersect: 252647608934.73965
[2025-07-27 22:35:42] 2025-07-28 02:35:10,283 | INFO     | chi2: 0.12843816028969757
[2025-07-27 22:35:42] 2025-07-28 02:35:10,283 | INFO     | -- intersect: 252647608934.73965
[2025-07-27 22:35:42] 2025-07-28 02:35:10,283 | INFO     | current memory leak: -144.07 B/s (using 64 data points, chi2=0.13)
[2025-07-27 22:35:42] 2025-07-28 02:35:10,283 | INFO     | could have reported an average CPU frequency of 2651 MHz (6 samples)
[2025-07-27 22:35:42] 2025-07-28 02:35:10,283 | INFO     | ..............................
[2025-07-27 22:35:42] 2025-07-28 02:35:10,283 | INFO     | . Timing measurements:
[2025-07-27 22:35:42] 2025-07-28 02:35:10,283 | INFO     | . get job = 0 s
[2025-07-27 22:35:42] 2025-07-28 02:35:10,283 | INFO     | . initial setup = 2 s
[2025-07-27 22:35:42] 2025-07-28 02:35:10,283 | INFO     | . payload setup = 6 s
[2025-07-27 22:35:42] 2025-07-28 02:35:10,283 | INFO     | . stage-in = 0 s
[2025-07-27 22:35:42] 2025-07-28 02:35:10,284 | INFO     | . payload execution = 4325 s
[2025-07-27 22:35:42] 2025-07-28 02:35:10,284 | INFO     | . stage-out = 0 s
[2025-07-27 22:35:42] 2025-07-28 02:35:10,284 | INFO     | . log creation = 0 s
[2025-07-27 22:35:42] 2025-07-28 02:35:10,284 | INFO     | ..............................
[2025-07-27 22:35:42] 2025-07-28 02:35:10,364 | INFO     | 
[2025-07-27 22:35:42] 2025-07-28 02:35:10,364 | INFO     | job summary report
[2025-07-27 22:35:42] 2025-07-28 02:35:10,364 | INFO     | --------------------------------------------------
[2025-07-27 22:35:42] 2025-07-28 02:35:10,364 | INFO     | PanDA job id: 6747599585
[2025-07-27 22:35:42] 2025-07-28 02:35:10,364 | INFO     | task id: 45743349
[2025-07-27 22:35:42] 2025-07-28 02:35:10,364 | INFO     | errors: (none)
[2025-07-27 22:35:42] 2025-07-28 02:35:10,364 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 22:35:42] 2025-07-28 02:35:10,364 | INFO     | pilot state: finished 
[2025-07-27 22:35:42] 2025-07-28 02:35:10,364 | INFO     | transexitcode: 0
[2025-07-27 22:35:42] 2025-07-28 02:35:10,364 | INFO     | exeerrorcode: 0
[2025-07-27 22:35:42] 2025-07-28 02:35:10,364 | INFO     | exeerrordiag: 
[2025-07-27 22:35:42] 2025-07-28 02:35:10,364 | INFO     | exitcode: 0
[2025-07-27 22:35:42] 2025-07-28 02:35:10,364 | INFO     | exitmsg: OK
[2025-07-27 22:35:42] 2025-07-28 02:35:10,364 | INFO     | cpuconsumptiontime: 47044 s
[2025-07-27 22:35:42] 2025-07-28 02:35:10,364 | INFO     | nevents: 400
[2025-07-27 22:35:42] 2025-07-28 02:35:10,365 | INFO     | neventsw: 0
[2025-07-27 22:35:42] 2025-07-28 02:35:10,365 | INFO     | pid: 1692797
[2025-07-27 22:35:42] 2025-07-28 02:35:10,365 | INFO     | pgrp: 1692797
[2025-07-27 22:35:42] 2025-07-28 02:35:10,365 | INFO     | corecount: 12
[2025-07-27 22:35:42] 2025-07-28 02:35:10,365 | INFO     | event service: False
[2025-07-27 22:35:42] 2025-07-28 02:35:10,365 | INFO     | sizes: {0: 2397304, 1: 2397503, 6: 2397765, 11: 2397793, 4335: 2423928, 4337: 2433110, 4341: 2433248}
[2025-07-27 22:35:42] 2025-07-28 02:35:10,365 | INFO     | --------------------------------------------------
[2025-07-27 22:35:42] 2025-07-28 02:35:10,365 | INFO     | 
[2025-07-27 22:35:42] 2025-07-28 02:35:10,365 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 22:35:42] 2025-07-28 02:35:10,380 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 22:35:42] 2025-07-28 02:35:10,380 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 22:35:42] 2025-07-28 02:35:10,380 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 22:35:42] 2025-07-28 02:35:10,380 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 22:35:42] 2025-07-28 02:35:10,380 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 22:35:42] 2025-07-28 02:35:10,381 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 22:35:42] 2025-07-28 02:35:10,381 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 22:35:42] 2025-07-28 02:35:10,381 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 22:35:42] 2025-07-28 02:35:10,381 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 22:35:42] 2025-07-28 02:35:10,381 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 22:35:42] 2025-07-28 02:35:10,381 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 22:35:42] 2025-07-28 02:35:10,381 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 22:35:42] 2025-07-28 02:35:10,381 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 22:35:42] 2025-07-28 02:35:10,381 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 22:35:42] 2025-07-28 02:35:10,381 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 22:35:42] 2025-07-28 02:35:10,381 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 22:35:42] 2025-07-28 02:35:10,381 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 22:35:42] 2025-07-28 02:35:10,381 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 22:35:42] 2025-07-28 02:35:10,381 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 22:35:42] 2025-07-28 02:35:10,381 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 22:35:42] 2025-07-28 02:35:10,381 | INFO     | job 6747599585 has completed (purged errors)
[2025-07-27 22:35:42] 2025-07-28 02:35:10,381 | INFO     | overall cleanup function is called
[2025-07-27 22:35:42] 2025-07-28 02:35:11,388 | INFO     | --- collectZombieJob: --- 10, [1692797]
[2025-07-27 22:35:42] 2025-07-28 02:35:11,388 | INFO     | zombie collector waiting for pid 1692797
[2025-07-27 22:35:42] 2025-07-28 02:35:11,388 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 22:35:42] 2025-07-28 02:35:11,388 | INFO     | collected zombie processes
[2025-07-27 22:35:42] 2025-07-28 02:35:11,388 | INFO     | will attempt to kill all subprocesses of pid=1692797
[2025-07-27 22:35:42] 2025-07-28 02:35:11,594 | INFO     | process IDs to be killed: [1692797] (in reverse order)
[2025-07-27 22:35:42] 2025-07-28 02:35:11,677 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 22:35:42] 2025-07-28 02:35:11,678 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 22:35:42] 2025-07-28 02:35:11,686 | INFO     | did not find any defunct processes belonging to 1692797
[2025-07-27 22:35:42] 2025-07-28 02:35:11,694 | INFO     | did not find any defunct processes belonging to 1692797
[2025-07-27 22:35:42] 2025-07-28 02:35:11,694 | INFO     | ready for new job
[2025-07-27 22:35:42] 2025-07-28 02:35:11,694 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 22:35:42] 2025-07-28 02:35:11,696 | INFO     | ***************************************
[2025-07-27 22:35:42] 2025-07-28 02:35:11,696 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 22:35:42] 2025-07-28 02:35:11,696 | INFO     | ***************************************
[2025-07-27 22:35:42] 2025-07-28 02:35:11,696 | INFO     | 
[2025-07-27 22:35:42] 2025-07-28 02:35:11,712 | INFO     | architecture information:
[2025-07-27 22:35:42] 2025-07-28 02:35:11,712 | INFO     | executing command: cat /etc/os-release
[2025-07-27 22:35:42] 2025-07-28 02:35:11,730 | INFO     | cat /etc/os-release:
[2025-07-27 22:35:42] NAME="CentOS Linux"
[2025-07-27 22:35:42] VERSION="7 (Core)"
[2025-07-27 22:35:42] ID="centos"
[2025-07-27 22:35:42] ID_LIKE="rhel fedora"
[2025-07-27 22:35:42] VERSION_ID="7"
[2025-07-27 22:35:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 22:35:42] ANSI_COLOR="0;31"
[2025-07-27 22:35:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 22:35:42] HOME_URL="https://www.centos.org/"
[2025-07-27 22:35:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 22:35:42] 
[2025-07-27 22:35:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 22:35:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 22:35:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 22:35:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 22:35:42] 
[2025-07-27 22:35:42] 2025-07-28 02:35:11,731 | INFO     | ***************************************
[2025-07-27 22:35:42] 2025-07-28 02:35:12,233 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 22:35:42] 2025-07-28 02:35:12,247 | INFO     | sufficient remaining disk space (76521930752 B)
[2025-07-27 22:35:42] 2025-07-28 02:35:12,247 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 22:35:42] 2025-07-28 02:35:12,247 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 22:35:42] 2025-07-28 02:35:12,247 | INFO     | update_server=False
[2025-07-27 22:35:42] 2025-07-28 02:35:12,247 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 22:35:42] 2025-07-28 02:35:12,248 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 22:35:42] 2025-07-28 02:35:12,301 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 22:35:42] 2025-07-28 02:35:12,618 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 22:35:42] 2025-07-28 02:35:12,618 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 22:35:42] 2025-07-28 02:35:12,618 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 22:35:42] 2025-07-28 02:35:12,618 | INFO     | will abort loop
[2025-07-27 22:35:42] 2025-07-28 02:35:12,708 | INFO     | all payload control threads have been joined
[2025-07-27 22:35:42] 2025-07-28 02:35:13,205 | INFO     | all data control threads have been joined
[2025-07-27 22:35:42] 2025-07-28 02:35:13,252 | INFO     | [job] retrieve thread has finished
[2025-07-27 22:35:42] 2025-07-28 02:35:13,253 | INFO     | [job] queue monitor thread has finished
[2025-07-27 22:35:42] 2025-07-28 02:35:13,309 | INFO     | [data] copytool_in thread has finished
[2025-07-27 22:35:42] 2025-07-28 02:35:13,353 | INFO     | [payload] validate_post thread has finished
[2025-07-27 22:35:42] 2025-07-28 02:35:13,619 | INFO     | [job] job monitor thread has finished
[2025-07-27 22:35:42] 2025-07-28 02:35:13,689 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 22:35:42] 2025-07-28 02:35:13,713 | INFO     | [payload] control thread has finished
[2025-07-27 22:35:42] 2025-07-28 02:35:13,926 | INFO     | all job control threads have been joined
[2025-07-27 22:35:42] 2025-07-28 02:35:14,081 | INFO     | [job] validate thread has finished
[2025-07-27 22:35:42] 2025-07-28 02:35:14,083 | INFO     | [payload] failed_post thread has finished
[2025-07-27 22:35:42] 2025-07-28 02:35:14,210 | INFO     | [data] control thread has finished
[2025-07-27 22:35:42] 2025-07-28 02:35:14,271 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 22:35:42] 2025-07-28 02:35:14,285 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 22:35:42] 2025-07-28 02:35:14,394 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 22:35:42] 2025-07-28 02:35:14,932 | INFO     | [job] control thread has finished
[2025-07-27 22:35:42] 2025-07-28 02:35:15,694 | INFO     | [data] copytool_out thread has finished
[2025-07-27 22:35:42] 2025-07-28 02:35:16,307 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 22:35:42] 2025-07-28 02:35:22,301 | INFO     | job.realtimelogging is not enabled
[2025-07-27 22:35:42] 2025-07-28 02:35:23,306 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 22:35:42] 2025-07-28 02:35:23,554 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139639339956032)>', '<ExcThread(monitor, started 139638706530048)>']
[2025-07-27 22:35:42] 2025-07-28 02:35:28,579 | INFO     | all workflow threads have been joined
[2025-07-27 22:35:42] 2025-07-28 02:35:28,579 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 22:35:42] 2025-07-28 02:35:28,579 | INFO     | traces error code: 0
[2025-07-27 22:35:42] 2025-07-28 02:35:28,580 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 22:35:42] 2025-07-28 02:35:42,280 | INFO     | PID=1685689 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 22:35:42] 2025-07-28 02:35:42,280 | INFO     | .. there are 7 such processes running
[2025-07-27 22:35:42] 2025-07-28 02:35:42,280 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 22:35:42] 2025-07-28 02:35:42,280 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 22:35:42] 2025-07-28 02:35:42,280 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 22:35:42] 2025-07-28 02:35:42,280 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 22:35:42] 2025-07-28 02:35:42,280 | INFO     | [monitor] control thread has ended
[2025-07-27 22:35:42] 2025-07-28 02:35:42,403 [wrapper] ==== pilot stdout END ====
[2025-07-27 22:35:42] 2025-07-28 02:35:42,407 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 22:35:42] 2025-07-28 02:35:42,410 [wrapper] pilotpid: 1685689
[2025-07-27 22:35:42] 2025-07-28 02:35:42,412 [wrapper] Pilot exit status: 0
[2025-07-27 22:35:42] 2025-07-28 02:35:42,421 [wrapper] pandaids: 6747599585
[2025-07-27 22:35:42] 2025-07-28 02:35:42,485 [wrapper] cleanup supervisor_pilot 1907882 1685690
[2025-07-27 22:35:42] 2025-07-28 02:35:42,487 [wrapper] Test setup, not cleaning
[2025-07-27 22:35:42] 2025-07-28 02:35:42,490 [wrapper] apfmon messages muted
[2025-07-27 22:35:42] 2025-07-28 02:35:42,493 [wrapper] ==== wrapper stdout END ====
[2025-07-27 22:35:42] 2025-07-28 02:35:42,497 [wrapper] ==== wrapper stderr END ====
[2025-07-27 22:35:42]  *** Error codes and diagnostics ***
[2025-07-27 22:35:42]     "exeErrorCode": 0,
[2025-07-27 22:35:42]     "exeErrorDiag": "",
[2025-07-27 22:35:42]     "pilotErrorCode": 0,
[2025-07-27 22:35:42]     "pilotErrorDiag": "",
[2025-07-27 22:35:42]  *** Listing of results directory ***
[2025-07-27 22:35:42] total 353988
[2025-07-27 22:35:42] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 14:41 queuedata.json
[2025-07-27 22:35:42] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 14:41 pilot3.tar.gz
[2025-07-27 22:35:42] -rwx------. 1 boincer umatlas     36292 Jul 27 14:43 runpilot2-wrapper.sh
[2025-07-27 22:35:42] -rw-r--r--. 1 boincer umatlas       100 Jul 27 21:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 22:35:42] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 21:22 run_atlas
[2025-07-27 22:35:42] -rw-r--r--. 1 boincer umatlas       105 Jul 27 21:22 job.xml
[2025-07-27 22:35:42] -rw-r--r--. 2 boincer umatlas 145124519 Jul 27 21:22 EVNT.45743347._002855.pool.root.1
[2025-07-27 22:35:42] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 21:22 start_atlas.sh
[2025-07-27 22:35:42] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 21:22 shared
[2025-07-27 22:35:42] -rw-r--r--. 2 boincer umatlas    542894 Jul 27 21:22 input.tar.gz
[2025-07-27 22:35:42] -rw-r--r--. 1 boincer umatlas         0 Jul 27 21:22 boinc_lockfile
[2025-07-27 22:35:42] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 21:22 pandaJob.out
[2025-07-27 22:35:42] -rw-------. 1 boincer umatlas    980125 Jul 27 21:22 agis_schedconf.cvmfs.json
[2025-07-27 22:35:42] -rw-------. 1 boincer umatlas   1593052 Jul 27 21:22 agis_ddmendpoints.agis.ALL.json
[2025-07-27 22:35:42] drwx------. 4 boincer umatlas      4096 Jul 27 21:22 pilot3
[2025-07-27 22:35:42] -rw-r--r--. 1 boincer umatlas      6842 Jul 27 22:29 init_data.xml
[2025-07-27 22:35:42] -rw-------. 1 boincer umatlas 211897476 Jul 27 22:34 HITS.45743349._053969.pool.root.1
[2025-07-27 22:35:42] -rw-r--r--. 1 boincer umatlas       529 Jul 27 22:34 boinc_task_state.xml
[2025-07-27 22:35:42] -rw-------. 1 boincer umatlas      1036 Jul 27 22:35 memory_monitor_summary.json
[2025-07-27 22:35:42] -rw-------. 1 boincer umatlas        95 Jul 27 22:35 pilot_heartbeat.json
[2025-07-27 22:35:42] -rw-------. 1 boincer umatlas    356417 Jul 27 22:35 log.45743349._053969.job.log.tgz.1
[2025-07-27 22:35:42] -rw-------. 1 boincer umatlas      7825 Jul 27 22:35 heartbeat.json
[2025-07-27 22:35:42] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 22:35 boinc_mmap_file
[2025-07-27 22:35:42] -rw-r--r--. 1 boincer umatlas        27 Jul 27 22:35 wrapper_checkpoint.txt
[2025-07-27 22:35:42] -rw-------. 1 boincer umatlas       822 Jul 27 22:35 pilotlog.txt
[2025-07-27 22:35:42] -rw-------. 1 boincer umatlas    438089 Jul 27 22:35 log.45743349._053969.job.log.1
[2025-07-27 22:35:42] -rw-------. 1 boincer umatlas       357 Jul 27 22:35 output.list
[2025-07-27 22:35:42] -rw-r--r--. 1 boincer umatlas       620 Jul 27 22:35 runtime_log
[2025-07-27 22:35:42] -rw-------. 1 boincer umatlas    808960 Jul 27 22:35 result.tar.gz
[2025-07-27 22:35:42] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 22:35 runtime_log.err
[2025-07-27 22:35:42] -rw-------. 1 boincer umatlas       654 Jul 27 22:35 QHtKDmfWL07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmW8VLDmz9pLSo.diag
[2025-07-27 22:35:42] -rw-r--r--. 1 boincer umatlas     21635 Jul 27 22:35 stderr.txt
[2025-07-27 22:35:42] HITS file was successfully produced:
[2025-07-27 22:35:42] -rw-------. 1 boincer umatlas 211897476 Jul 27 22:34 shared/HITS.pool.root.1
[2025-07-27 22:35:42]  *** Contents of shared directory: ***
[2025-07-27 22:35:42] total 350004
[2025-07-27 22:35:42] -rw-r--r--. 2 boincer umatlas 145124519 Jul 27 21:22 ATLAS.root_0
[2025-07-27 22:35:42] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 21:22 start_atlas.sh
[2025-07-27 22:35:42] -rw-r--r--. 2 boincer umatlas    542894 Jul 27 21:22 input.tar.gz
[2025-07-27 22:35:42] -rw-------. 1 boincer umatlas 211897476 Jul 27 22:34 HITS.pool.root.1
[2025-07-27 22:35:42] -rw-------. 1 boincer umatlas    808960 Jul 27 22:35 result.tar.gz
22:35:43 (1681935): run_atlas exited; CPU time 47141.810052
22:35:43 (1681935): called boinc_finish(0)

</stderr_txt>
]]>

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