Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:45:35 (839959): wrapper (7.7.26015): starting
22:45:35 (839959): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 22:45:35] Arguments: --nthreads 12
[2025-07-27 22:45:35] Threads: 12
[2025-07-27 22:45:35] Checking for CVMFS
[2025-07-27 22:45:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 22:45:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 22:45:35] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 22:45:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 22:45:35] 2.13.0.0 1889558 19222 305392 148832 2 136 28805420 40960001 11583 16776704 1 53807799 99.811 44170828 29183 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 22:45:35] CVMFS is ok
[2025-07-27 22:45:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 22:45:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 22:45:35] Further information can be found at the LHC@home message board.
[2025-07-27 22:45:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 22:45:35] Checking for apptainer binary...
[2025-07-27 22:45:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 22:45:35] Running /usr/bin/apptainer --version
[2025-07-27 22:45:35] apptainer version 1.4.1-1.el9
[2025-07-27 22:45:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 22:45:36] c6-5-7-1.aglt2.org
[2025-07-27 22:45:36] apptainer works
[2025-07-27 22:45:36] Set ATHENA_PROC_NUMBER=12
[2025-07-27 22:45:36] Set ATHENA_CORE_NUMBER=12
[2025-07-27 22:45:36] Starting ATLAS job with PandaID=6747599495
[2025-07-27 22:45:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 00:24:37]  *** The last 200 lines of the pilot log: ***
[2025-07-28 00:24:37]  status_code=0
[2025-07-28 00:24:37]  storage_token=
[2025-07-28 00:24:37]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747599495/log.45743349._053879.job.log.tgz.1
[2025-07-28 00:24:37]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/85/c0/log.45743349._053879.job.log.tgz.1
[2025-07-28 00:24:37]  workdir=None
[2025-07-28 00:24:37] ]
[2025-07-28 00:24:37] 2025-07-28 04:23:52,451 | INFO     | transferring file log.45743349._053879.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747599495/log.45743349._053879.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 00:24:37] 2025-07-28 04:23:52,452 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747599495/log.45743349._053879.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._053879.job
[2025-07-28 00:24:37] 2025-07-28 04:23:52,481 | INFO     | adding to output.list: log.45743349._053879.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/85/c0/log.45743349._053879.job.log.tg
[2025-07-28 00:24:37] 2025-07-28 04:23:52,482 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 00:24:37] 2025-07-28 04:23:52,482 | INFO     | summary of transferred files:
[2025-07-28 00:24:37] 2025-07-28 04:23:52,482 | INFO     |  -- lfn=log.45743349._053879.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 00:24:37] 2025-07-28 04:23:52,482 | INFO     | stage-out finished correctly
[2025-07-28 00:24:37] 2025-07-28 04:23:52,921 | WARNING  | process 851511 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 00:24:37] 2025-07-28 04:23:52,922 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747599495/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 00:24:37] 2025-07-28 04:23:53,169 | INFO     | number of running child processes to parent process 851511: 1
[2025-07-28 00:24:37] 2025-07-28 04:23:53,169 | INFO     | maximum number of monitored processes: 6
[2025-07-28 00:24:37] 2025-07-28 04:23:53,860 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 00:24:37] 2025-07-28 04:23:55,672 | INFO     | monitor loop #388: job 0:6747599495 is in state 'finished'
[2025-07-28 00:24:37] 2025-07-28 04:23:55,673 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 00:24:37] 2025-07-28 04:23:56,488 | INFO     | job 6747599495 has state=finished
[2025-07-28 00:24:37] 2025-07-28 04:23:56,488 | INFO     | preparing for final server update for job 6747599495 in state='finished'
[2025-07-28 00:24:37] 2025-07-28 04:23:56,559 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-28 00:24:37] 2025-07-28 04:23:56,559 | INFO     | this job has now completed (state=finished)
[2025-07-28 00:24:37] 2025-07-28 04:23:56,559 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 00:24:37] 2025-07-28 04:23:56,559 | INFO     | log transfer has been attempted: DONE
[2025-07-28 00:24:37] 2025-07-28 04:23:56,560 | INFO     | job 6747599495 has finished - writing final server update
[2025-07-28 00:24:37] 2025-07-28 04:23:56,560 | INFO     | total number of processed events: 400 (read)
[2025-07-28 00:24:37] 2025-07-28 04:23:56,561 | INFO     | executing command: lscpu
[2025-07-28 00:24:37] 2025-07-28 04:23:56,623 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 00:24:37] 2025-07-28 04:23:58,177 | INFO     | monitor loop #389: job 0:6747599495 is in state 'finished'
[2025-07-28 00:24:37] 2025-07-28 04:23:58,177 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 00:24:37] 2025-07-28 04:24:00,680 | INFO     | monitor loop #390: job 0:6747599495 is in state 'finished'
[2025-07-28 00:24:37] 2025-07-28 04:24:00,680 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 00:24:37] 2025-07-28 04:24:02,844 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-28 00:24:37] 2025-07-28 04:24:02,855 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2603.6486071428562
[2025-07-28 00:24:37] 2025-07-28 04:24:02,866 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747599495/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 00:24:37] 2025-07-28 04:24:02,867 | INFO     | extracted standard info from prmon json
[2025-07-28 00:24:37] 2025-07-28 04:24:02,867 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 00:24:37] 2025-07-28 04:24:02,867 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 00:24:37] 2025-07-28 04:24:02,868 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 00:24:37] 2025-07-28 04:24:02,868 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 00:24:37] 2025-07-28 04:24:02,870 | INFO     | fitting pss+swap vs Time
[2025-07-28 00:24:37] 2025-07-28 04:24:02,870 | INFO     | sum of square deviations: 218601327.55056196
[2025-07-28 00:24:37] 2025-07-28 04:24:02,871 | INFO     | sum of deviations: -16299273412.056177
[2025-07-28 00:24:37] 2025-07-28 04:24:02,871 | INFO     | mean x: 1753673768.3258426
[2025-07-28 00:24:37] 2025-07-28 04:24:02,871 | INFO     | mean y: 2510659.415730337
[2025-07-28 00:24:37] 2025-07-28 04:24:02,871 | INFO     | -- intersect: 130759302238.74615
[2025-07-28 00:24:37] 2025-07-28 04:24:02,871 | INFO     | intersect: 130759302238.74615
[2025-07-28 00:24:37] 2025-07-28 04:24:02,871 | INFO     | chi2: 0.19252526034292908
[2025-07-28 00:24:37] 2025-07-28 04:24:02,871 | INFO     | -- intersect: 130759302238.74615
[2025-07-28 00:24:37] 2025-07-28 04:24:02,871 | INFO     | current memory leak: -74.56 B/s (using 89 data points, chi2=0.19)
[2025-07-28 00:24:37] 2025-07-28 04:24:02,872 | INFO     | could have reported an average CPU frequency of 2666 MHz (7 samples)
[2025-07-28 00:24:37] 2025-07-28 04:24:02,872 | INFO     | ..............................
[2025-07-28 00:24:37] 2025-07-28 04:24:02,872 | INFO     | . Timing measurements:
[2025-07-28 00:24:37] 2025-07-28 04:24:02,872 | INFO     | . get job = 0 s
[2025-07-28 00:24:37] 2025-07-28 04:24:02,872 | INFO     | . initial setup = 2 s
[2025-07-28 00:24:37] 2025-07-28 04:24:02,872 | INFO     | . payload setup = 8 s
[2025-07-28 00:24:37] 2025-07-28 04:24:02,872 | INFO     | . stage-in = 0 s
[2025-07-28 00:24:37] 2025-07-28 04:24:02,872 | INFO     | . payload execution = 5857 s
[2025-07-28 00:24:37] 2025-07-28 04:24:02,872 | INFO     | . stage-out = 0 s
[2025-07-28 00:24:37] 2025-07-28 04:24:02,872 | INFO     | . log creation = 0 s
[2025-07-28 00:24:37] 2025-07-28 04:24:02,872 | INFO     | ..............................
[2025-07-28 00:24:37] 2025-07-28 04:24:03,295 | INFO     | 
[2025-07-28 00:24:37] 2025-07-28 04:24:03,296 | INFO     | job summary report
[2025-07-28 00:24:37] 2025-07-28 04:24:03,296 | INFO     | --------------------------------------------------
[2025-07-28 00:24:37] 2025-07-28 04:24:03,296 | INFO     | PanDA job id: 6747599495
[2025-07-28 00:24:37] 2025-07-28 04:24:03,296 | INFO     | task id: 45743349
[2025-07-28 00:24:37] 2025-07-28 04:24:03,296 | INFO     | errors: (none)
[2025-07-28 00:24:37] 2025-07-28 04:24:03,296 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 00:24:37] 2025-07-28 04:24:03,297 | INFO     | pilot state: finished 
[2025-07-28 00:24:37] 2025-07-28 04:24:03,297 | INFO     | transexitcode: 0
[2025-07-28 00:24:37] 2025-07-28 04:24:03,297 | INFO     | exeerrorcode: 0
[2025-07-28 00:24:37] 2025-07-28 04:24:03,297 | INFO     | exeerrordiag: 
[2025-07-28 00:24:37] 2025-07-28 04:24:03,297 | INFO     | exitcode: 0
[2025-07-28 00:24:37] 2025-07-28 04:24:03,297 | INFO     | exitmsg: OK
[2025-07-28 00:24:37] 2025-07-28 04:24:03,297 | INFO     | cpuconsumptiontime: 51034 s
[2025-07-28 00:24:37] 2025-07-28 04:24:03,297 | INFO     | nevents: 400
[2025-07-28 00:24:37] 2025-07-28 04:24:03,297 | INFO     | neventsw: 0
[2025-07-28 00:24:37] 2025-07-28 04:24:03,297 | INFO     | pid: 851511
[2025-07-28 00:24:37] 2025-07-28 04:24:03,297 | INFO     | pgrp: 851511
[2025-07-28 00:24:37] 2025-07-28 04:24:03,299 | INFO     | corecount: 12
[2025-07-28 00:24:37] 2025-07-28 04:24:03,299 | INFO     | event service: False
[2025-07-28 00:24:37] 2025-07-28 04:24:03,299 | INFO     | sizes: {0: 2397361, 1: 2397503, 6: 2397765, 11: 2397793, 5866: 2424437, 5868: 2433435, 5869: 2433619, 5878: 2433813}
[2025-07-28 00:24:37] 2025-07-28 04:24:03,299 | INFO     | --------------------------------------------------
[2025-07-28 00:24:37] 2025-07-28 04:24:03,299 | INFO     | 
[2025-07-28 00:24:37] 2025-07-28 04:24:03,300 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 00:24:37] 2025-07-28 04:24:03,337 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 00:24:37] 2025-07-28 04:24:03,337 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 00:24:37] 2025-07-28 04:24:03,338 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 00:24:37] 2025-07-28 04:24:03,338 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 00:24:37] 2025-07-28 04:24:03,338 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 00:24:37] 2025-07-28 04:24:03,338 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 00:24:37] 2025-07-28 04:24:03,338 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 00:24:37] 2025-07-28 04:24:03,338 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 00:24:37] 2025-07-28 04:24:03,338 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 00:24:37] 2025-07-28 04:24:03,338 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 00:24:37] 2025-07-28 04:24:03,338 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 00:24:37] 2025-07-28 04:24:03,338 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 00:24:37] 2025-07-28 04:24:03,338 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 00:24:37] 2025-07-28 04:24:03,338 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 00:24:37] 2025-07-28 04:24:03,338 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 00:24:37] 2025-07-28 04:24:03,338 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 00:24:37] 2025-07-28 04:24:03,339 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 00:24:37] 2025-07-28 04:24:03,339 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 00:24:37] 2025-07-28 04:24:03,339 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 00:24:37] 2025-07-28 04:24:03,339 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 00:24:37] 2025-07-28 04:24:03,339 | INFO     | job 6747599495 has completed (purged errors)
[2025-07-28 00:24:37] 2025-07-28 04:24:03,339 | INFO     | overall cleanup function is called
[2025-07-28 00:24:37] 2025-07-28 04:24:04,347 | INFO     | --- collectZombieJob: --- 10, [851511]
[2025-07-28 00:24:37] 2025-07-28 04:24:04,348 | INFO     | zombie collector waiting for pid 851511
[2025-07-28 00:24:37] 2025-07-28 04:24:04,348 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 00:24:37] 2025-07-28 04:24:04,348 | INFO     | collected zombie processes
[2025-07-28 00:24:37] 2025-07-28 04:24:04,348 | INFO     | will attempt to kill all subprocesses of pid=851511
[2025-07-28 00:24:37] 2025-07-28 04:24:04,651 | INFO     | process IDs to be killed: [851511] (in reverse order)
[2025-07-28 00:24:37] 2025-07-28 04:24:04,741 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 00:24:37] 2025-07-28 04:24:04,741 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 00:24:37] 2025-07-28 04:24:04,752 | INFO     | did not find any defunct processes belonging to 851511
[2025-07-28 00:24:37] 2025-07-28 04:24:04,762 | INFO     | did not find any defunct processes belonging to 851511
[2025-07-28 00:24:37] 2025-07-28 04:24:04,763 | INFO     | ready for new job
[2025-07-28 00:24:37] 2025-07-28 04:24:04,763 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 00:24:37] 2025-07-28 04:24:04,765 | INFO     | ***************************************
[2025-07-28 00:24:37] 2025-07-28 04:24:04,765 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 00:24:37] 2025-07-28 04:24:04,765 | INFO     | ***************************************
[2025-07-28 00:24:37] 2025-07-28 04:24:04,766 | INFO     | 
[2025-07-28 00:24:37] 2025-07-28 04:24:04,782 | INFO     | architecture information:
[2025-07-28 00:24:37] 2025-07-28 04:24:04,783 | INFO     | executing command: cat /etc/os-release
[2025-07-28 00:24:37] 2025-07-28 04:24:04,812 | INFO     | cat /etc/os-release:
[2025-07-28 00:24:37] NAME="CentOS Linux"
[2025-07-28 00:24:37] VERSION="7 (Core)"
[2025-07-28 00:24:37] ID="centos"
[2025-07-28 00:24:37] ID_LIKE="rhel fedora"
[2025-07-28 00:24:37] VERSION_ID="7"
[2025-07-28 00:24:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 00:24:37] ANSI_COLOR="0;31"
[2025-07-28 00:24:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 00:24:37] HOME_URL="https://www.centos.org/"
[2025-07-28 00:24:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 00:24:37] 
[2025-07-28 00:24:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 00:24:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 00:24:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 00:24:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 00:24:37] 
[2025-07-28 00:24:37] 2025-07-28 04:24:04,813 | INFO     | ***************************************
[2025-07-28 00:24:37] 2025-07-28 04:24:05,315 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 00:24:37] 2025-07-28 04:24:05,339 | INFO     | sufficient remaining disk space (71298973696 B)
[2025-07-28 00:24:37] 2025-07-28 04:24:05,339 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 00:24:37] 2025-07-28 04:24:05,340 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 00:24:37] 2025-07-28 04:24:05,340 | INFO     | update_server=False
[2025-07-28 00:24:37] 2025-07-28 04:24:05,340 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 00:24:37] 2025-07-28 04:24:05,340 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 00:24:37] 2025-07-28 04:24:05,376 | INFO     | all data control threads have been joined
[2025-07-28 00:24:37] 2025-07-28 04:24:05,584 | INFO     | all job control threads have been joined
[2025-07-28 00:24:37] 2025-07-28 04:24:05,602 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 00:24:37] 2025-07-28 04:24:05,690 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-28 00:24:37] 2025-07-28 04:24:05,690 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-28 00:24:37] 2025-07-28 04:24:05,690 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 00:24:37] 2025-07-28 04:24:05,690 | INFO     | will abort loop
[2025-07-28 00:24:37] 2025-07-28 04:24:06,345 | INFO     | [job] retrieve thread has finished
[2025-07-28 00:24:37] 2025-07-28 04:24:06,381 | INFO     | [data] control thread has finished
[2025-07-28 00:24:37] 2025-07-28 04:24:06,403 | INFO     | [payload] failed_post thread has finished
[2025-07-28 00:24:37] 2025-07-28 04:24:06,488 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 00:24:37] 2025-07-28 04:24:06,590 | INFO     | [job] control thread has finished
[2025-07-28 00:24:37] 2025-07-28 04:24:06,603 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 00:24:37] 2025-07-28 04:24:06,686 | INFO     | all payload control threads have been joined
[2025-07-28 00:24:37] 2025-07-28 04:24:06,693 | INFO     | [payload] validate_post thread has finished
[2025-07-28 00:24:37] 2025-07-28 04:24:06,695 | INFO     | [job] job monitor thread has finished
[2025-07-28 00:24:37] 2025-07-28 04:24:06,736 | INFO     | [job] validate thread has finished
[2025-07-28 00:24:37] 2025-07-28 04:24:07,191 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 00:24:37] 2025-07-28 04:24:07,323 | INFO     | [data] copytool_in thread has finished
[2025-07-28 00:24:37] 2025-07-28 04:24:07,608 | INFO     | [data] copytool_out thread has finished
[2025-07-28 00:24:37] 2025-07-28 04:24:07,691 | INFO     | [payload] control thread has finished
[2025-07-28 00:24:37] 2025-07-28 04:24:07,992 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 00:24:37] 2025-07-28 04:24:08,998 | INFO     | [job] queue monitor thread has finished
[2025-07-28 00:24:37] 2025-07-28 04:24:09,346 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 00:24:37] 2025-07-28 04:24:16,115 | INFO     | job.realtimelogging is not enabled
[2025-07-28 00:24:37] 2025-07-28 04:24:17,120 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 00:24:37] 2025-07-28 04:24:18,067 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139849208932160)>', '<ExcThread(monitor, started 139848346228480)>']
[2025-07-28 00:24:37] 2025-07-28 04:24:23,092 | INFO     | all workflow threads have been joined
[2025-07-28 00:24:37] 2025-07-28 04:24:23,092 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 00:24:37] 2025-07-28 04:24:23,093 | INFO     | traces error code: 0
[2025-07-28 00:24:37] 2025-07-28 04:24:23,093 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 00:24:37] 2025-07-28 04:24:36,699 | INFO     | PID=843754 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 00:24:37] 2025-07-28 04:24:36,700 | INFO     | .. there are 13 such processes running
[2025-07-28 00:24:37] 2025-07-28 04:24:36,700 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 00:24:37] 2025-07-28 04:24:36,700 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 00:24:37] 2025-07-28 04:24:36,700 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 00:24:37] 2025-07-28 04:24:36,700 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 00:24:37] 2025-07-28 04:24:36,700 | INFO     | [monitor] control thread has ended
[2025-07-28 00:24:37] 2025-07-28 04:24:36,871 [wrapper] ==== pilot stdout END ====
[2025-07-28 00:24:37] 2025-07-28 04:24:36,875 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 00:24:37] 2025-07-28 04:24:36,878 [wrapper] pilotpid: 843754
[2025-07-28 00:24:37] 2025-07-28 04:24:36,881 [wrapper] Pilot exit status: 0
[2025-07-28 00:24:37] 2025-07-28 04:24:36,896 [wrapper] pandaids: 6747599495
[2025-07-28 00:24:37] 2025-07-28 04:24:36,957 [wrapper] cleanup supervisor_pilot 1140097 843755
[2025-07-28 00:24:37] 2025-07-28 04:24:36,960 [wrapper] Test setup, not cleaning
[2025-07-28 00:24:37] 2025-07-28 04:24:36,963 [wrapper] apfmon messages muted
[2025-07-28 00:24:37] 2025-07-28 04:24:36,967 [wrapper] ==== wrapper stdout END ====
[2025-07-28 00:24:37] 2025-07-28 04:24:36,972 [wrapper] ==== wrapper stderr END ====
[2025-07-28 00:24:37]  *** Error codes and diagnostics ***
[2025-07-28 00:24:37]     "exeErrorCode": 0,
[2025-07-28 00:24:37]     "exeErrorDiag": "",
[2025-07-28 00:24:37]     "pilotErrorCode": 0,
[2025-07-28 00:24:37]     "pilotErrorDiag": "",
[2025-07-28 00:24:37]  *** Listing of results directory ***
[2025-07-28 00:24:37] total 361496
[2025-07-28 00:24:37] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 14:08 pilot3.tar.gz
[2025-07-28 00:24:37] -rwx------. 1 boincer umatlas     36292 Jul 27 14:39 runpilot2-wrapper.sh
[2025-07-28 00:24:37] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 14:39 queuedata.json
[2025-07-28 00:24:37] -rw-r--r--. 1 boincer umatlas       100 Jul 27 22:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 00:24:37] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 22:45 run_atlas
[2025-07-28 00:24:37] -rw-r--r--. 1 boincer umatlas       105 Jul 27 22:45 job.xml
[2025-07-28 00:24:37] -rw-r--r--. 2 boincer umatlas 149923239 Jul 27 22:45 EVNT.45743347._002849.pool.root.1
[2025-07-28 00:24:37] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 22:45 start_atlas.sh
[2025-07-28 00:24:37] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 22:45 shared
[2025-07-28 00:24:37] -rw-r--r--. 2 boincer umatlas    542892 Jul 27 22:45 input.tar.gz
[2025-07-28 00:24:37] -rw-r--r--. 1 boincer umatlas         0 Jul 27 22:45 boinc_lockfile
[2025-07-28 00:24:37] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 22:45 pandaJob.out
[2025-07-28 00:24:37] -rw-------. 1 boincer umatlas    980125 Jul 27 22:45 agis_schedconf.cvmfs.json
[2025-07-28 00:24:37] -rw-------. 1 boincer umatlas   1593052 Jul 27 22:45 agis_ddmendpoints.agis.ALL.json
[2025-07-28 00:24:37] drwx------. 4 boincer umatlas      4096 Jul 27 22:45 pilot3
[2025-07-28 00:24:37] -rw-r--r--. 1 boincer umatlas      6839 Jul 28 00:21 init_data.xml
[2025-07-28 00:24:37] -rw-------. 1 boincer umatlas 214562061 Jul 28 00:23 HITS.45743349._053879.pool.root.1
[2025-07-28 00:24:37] -rw-r--r--. 1 boincer umatlas       529 Jul 28 00:23 boinc_task_state.xml
[2025-07-28 00:24:37] -rw-------. 1 boincer umatlas        95 Jul 28 00:23 pilot_heartbeat.json
[2025-07-28 00:24:37] -rw-------. 1 boincer umatlas      1038 Jul 28 00:23 memory_monitor_summary.json
[2025-07-28 00:24:37] -rw-------. 1 boincer umatlas    373543 Jul 28 00:23 log.45743349._053879.job.log.tgz.1
[2025-07-28 00:24:37] -rw-------. 1 boincer umatlas      7822 Jul 28 00:24 heartbeat.json
[2025-07-28 00:24:37] -rw-r--r--. 1 boincer umatlas        27 Jul 28 00:24 wrapper_checkpoint.txt
[2025-07-28 00:24:37] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 00:24 boinc_mmap_file
[2025-07-28 00:24:37] -rw-------. 1 boincer umatlas       822 Jul 28 00:24 pilotlog.txt
[2025-07-28 00:24:37] -rw-------. 1 boincer umatlas    532659 Jul 28 00:24 log.45743349._053879.job.log.1
[2025-07-28 00:24:37] -rw-------. 1 boincer umatlas       357 Jul 28 00:24 output.list
[2025-07-28 00:24:37] -rw-r--r--. 1 boincer umatlas       620 Jul 28 00:24 runtime_log
[2025-07-28 00:24:37] -rw-------. 1 boincer umatlas    921600 Jul 28 00:24 result.tar.gz
[2025-07-28 00:24:37] -rw-r--r--. 1 boincer umatlas      8662 Jul 28 00:24 runtime_log.err
[2025-07-28 00:24:37] -rw-------. 1 boincer umatlas       653 Jul 28 00:24 mpTLDmnSL07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmX7VLDmzO4Wqn.diag
[2025-07-28 00:24:37] -rw-r--r--. 1 boincer umatlas     22153 Jul 28 00:24 stderr.txt
[2025-07-28 00:24:37] HITS file was successfully produced:
[2025-07-28 00:24:37] -rw-------. 1 boincer umatlas 214562061 Jul 28 00:23 shared/HITS.pool.root.1
[2025-07-28 00:24:37]  *** Contents of shared directory: ***
[2025-07-28 00:24:37] total 357400
[2025-07-28 00:24:37] -rw-r--r--. 2 boincer umatlas 149923239 Jul 27 22:45 ATLAS.root_0
[2025-07-28 00:24:37] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 22:45 start_atlas.sh
[2025-07-28 00:24:37] -rw-r--r--. 2 boincer umatlas    542892 Jul 27 22:45 input.tar.gz
[2025-07-28 00:24:37] -rw-------. 1 boincer umatlas 214562061 Jul 28 00:23 HITS.pool.root.1
[2025-07-28 00:24:37] -rw-------. 1 boincer umatlas    921600 Jul 28 00:24 result.tar.gz
00:24:38 (839959): run_atlas exited; CPU time 51136.773578
00:24:38 (839959): called boinc_finish(0)

</stderr_txt>
]]>

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