Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:54:41 (7395): wrapper (7.7.26015): starting
19:54:41 (7395): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 19:54:41] Arguments: --nthreads 12
[2025-07-27 19:54:41] Threads: 12
[2025-07-27 19:54:41] Checking for CVMFS
[2025-07-27 19:54:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 19:54:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 19:54:41] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 19:54:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 19:54:41] 2.11.2.0 2914 112688 94896 148828 2 57 15599932 20275200 1 130560 0 38362741 99.969 9749370 10663 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 19:54:41] CVMFS is ok
[2025-07-27 19:54:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 19:54:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 19:54:41] Further information can be found at the LHC@home message board.
[2025-07-27 19:54:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 19:54:41] Checking for apptainer binary...
[2025-07-27 19:54:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 19:54:41] Running /usr/bin/apptainer --version
[2025-07-27 19:54:41] apptainer version 1.3.2-1.el7
[2025-07-27 19:54:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 19:54:43] c-205-5.aglt2.org
[2025-07-27 19:54:43] apptainer works
[2025-07-27 19:54:43] Set ATHENA_PROC_NUMBER=12
[2025-07-27 19:54:43] Set ATHENA_CORE_NUMBER=12
[2025-07-27 19:54:43] Starting ATLAS job with PandaID=6745351451
[2025-07-27 19:54:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 21:18:57]  *** The last 200 lines of the pilot log: ***
[2025-07-27 21:18:57]  guid=ced6ee30-736a-4392-8a7f-fa58175619e9
[2025-07-27 21:18:57]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-07-27 21:18:57]  is_altstaged=None
[2025-07-27 21:18:57]  is_tar=False
[2025-07-27 21:18:57]  lfn=log.45743349._042038.job.log.tgz.1
[2025-07-27 21:18:57]  mtime=0
[2025-07-27 21:18:57]  protocol_id=None
[2025-07-27 21:18:57]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 21:18:57]  replicas=None
[2025-07-27 21:18:57]  scope=mc23_13p6TeV
[2025-07-27 21:18:57]  status=None
[2025-07-27 21:18:57]  status_code=0
[2025-07-27 21:18:57]  storage_token=
[2025-07-27 21:18:57]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745351451/log.45743349._042038.job.log.tgz.1
[2025-07-27 21:18:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3a/e7/log.45743349._042038.job.log.tgz.1
[2025-07-27 21:18:57]  workdir=None
[2025-07-27 21:18:57] ]
[2025-07-27 21:18:57] 2025-07-28 01:18:19,504 | INFO     | transferring file log.45743349._042038.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745351451/log.45743349._042038.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 21:18:57] 2025-07-28 01:18:19,504 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745351451/log.45743349._042038.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._042038.job
[2025-07-27 21:18:57] 2025-07-28 01:18:19,533 | INFO     | adding to output.list: log.45743349._042038.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3a/e7/log.45743349._042038.job.log.tg
[2025-07-27 21:18:57] 2025-07-28 01:18:19,534 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 21:18:57] 2025-07-28 01:18:19,534 | INFO     | summary of transferred files:
[2025-07-27 21:18:57] 2025-07-28 01:18:19,534 | INFO     |  -- lfn=log.45743349._042038.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 21:18:57] 2025-07-28 01:18:19,534 | INFO     | stage-out finished correctly
[2025-07-27 21:18:57] 2025-07-28 01:18:20,411 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 21:18:57] 2025-07-28 01:18:20,819 | INFO     | job 6745351451 has state=finished
[2025-07-27 21:18:57] 2025-07-28 01:18:20,819 | INFO     | preparing for final server update for job 6745351451 in state='finished'
[2025-07-27 21:18:57] 2025-07-28 01:18:20,820 | INFO     | this job has now completed (state=finished)
[2025-07-27 21:18:57] 2025-07-28 01:18:20,820 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 21:18:57] 2025-07-28 01:18:20,820 | INFO     | log transfer has been attempted: DONE
[2025-07-27 21:18:57] 2025-07-28 01:18:20,821 | INFO     | job 6745351451 has finished - writing final server update
[2025-07-27 21:18:57] 2025-07-28 01:18:20,821 | INFO     | total number of processed events: 400 (read)
[2025-07-27 21:18:57] 2025-07-28 01:18:20,822 | INFO     | executing command: lscpu
[2025-07-27 21:18:57] 2025-07-28 01:18:20,849 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 21:18:57] 2025-07-28 01:18:21,280 | INFO     | monitor loop #373: job 0:6745351451 is in state 'finished'
[2025-07-27 21:18:57] 2025-07-28 01:18:21,280 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:18:57] 2025-07-28 01:18:23,781 | INFO     | monitor loop #374: job 0:6745351451 is in state 'finished'
[2025-07-27 21:18:57] 2025-07-28 01:18:23,782 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:18:57] 2025-07-28 01:18:25,912 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-27 21:18:57] 2025-07-28 01:18:25,916 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1729.0833333333333
[2025-07-27 21:18:57] 2025-07-28 01:18:25,918 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745351451/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 21:18:57] 2025-07-28 01:18:25,919 | INFO     | extracted standard info from prmon json
[2025-07-27 21:18:57] 2025-07-28 01:18:25,919 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 21:18:57] 2025-07-28 01:18:25,919 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 21:18:57] 2025-07-28 01:18:25,919 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 21:18:57] 2025-07-28 01:18:25,919 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 21:18:57] 2025-07-28 01:18:25,921 | INFO     | fitting pss+swap vs Time
[2025-07-27 21:18:57] 2025-07-28 01:18:25,921 | INFO     | sum of square deviations: 130793150.0
[2025-07-27 21:18:57] 2025-07-28 01:18:25,922 | INFO     | sum of deviations: -8315360911.999999
[2025-07-27 21:18:57] 2025-07-28 01:18:25,922 | INFO     | mean x: 1753663090.0
[2025-07-27 21:18:57] 2025-07-28 01:18:25,922 | INFO     | mean y: 2758251.933333333
[2025-07-27 21:18:57] 2025-07-28 01:18:25,922 | INFO     | -- intersect: 111494388443.59961
[2025-07-27 21:18:57] 2025-07-28 01:18:25,922 | INFO     | intersect: 111494388443.59961
[2025-07-27 21:18:57] 2025-07-28 01:18:25,922 | INFO     | chi2: 0.05731118106733472
[2025-07-27 21:18:57] 2025-07-28 01:18:25,922 | INFO     | -- intersect: 111494388443.59961
[2025-07-27 21:18:57] 2025-07-28 01:18:25,923 | INFO     | current memory leak: -63.58 B/s (using 75 data points, chi2=0.06)
[2025-07-27 21:18:57] 2025-07-28 01:18:25,923 | INFO     | could have reported an average CPU frequency of 2056 MHz (6 samples)
[2025-07-27 21:18:57] 2025-07-28 01:18:25,923 | INFO     | ..............................
[2025-07-27 21:18:57] 2025-07-28 01:18:25,923 | INFO     | . Timing measurements:
[2025-07-27 21:18:57] 2025-07-28 01:18:25,923 | INFO     | . get job = 0 s
[2025-07-27 21:18:57] 2025-07-28 01:18:25,923 | INFO     | . initial setup = 2 s
[2025-07-27 21:18:57] 2025-07-28 01:18:25,923 | INFO     | . payload setup = 9 s
[2025-07-27 21:18:57] 2025-07-28 01:18:25,923 | INFO     | . stage-in = 0 s
[2025-07-27 21:18:57] 2025-07-28 01:18:25,924 | INFO     | . payload execution = 4972 s
[2025-07-27 21:18:57] 2025-07-28 01:18:25,924 | INFO     | . stage-out = 0 s
[2025-07-27 21:18:57] 2025-07-28 01:18:25,924 | INFO     | . log creation = 0 s
[2025-07-27 21:18:57] 2025-07-28 01:18:25,924 | INFO     | ..............................
[2025-07-27 21:18:57] 2025-07-28 01:18:26,028 | INFO     | 
[2025-07-27 21:18:57] 2025-07-28 01:18:26,028 | INFO     | job summary report
[2025-07-27 21:18:57] 2025-07-28 01:18:26,028 | INFO     | --------------------------------------------------
[2025-07-27 21:18:57] 2025-07-28 01:18:26,028 | INFO     | PanDA job id: 6745351451
[2025-07-27 21:18:57] 2025-07-28 01:18:26,028 | INFO     | task id: 45743349
[2025-07-27 21:18:57] 2025-07-28 01:18:26,028 | INFO     | errors: (none)
[2025-07-27 21:18:57] 2025-07-28 01:18:26,028 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 21:18:57] 2025-07-28 01:18:26,029 | INFO     | pilot state: finished 
[2025-07-27 21:18:57] 2025-07-28 01:18:26,029 | INFO     | transexitcode: 0
[2025-07-27 21:18:57] 2025-07-28 01:18:26,029 | INFO     | exeerrorcode: 0
[2025-07-27 21:18:57] 2025-07-28 01:18:26,029 | INFO     | exeerrordiag: 
[2025-07-27 21:18:57] 2025-07-28 01:18:26,029 | INFO     | exitcode: 0
[2025-07-27 21:18:57] 2025-07-28 01:18:26,029 | INFO     | exitmsg: OK
[2025-07-27 21:18:57] 2025-07-28 01:18:26,029 | INFO     | cpuconsumptiontime: 53737 s
[2025-07-27 21:18:57] 2025-07-28 01:18:26,029 | INFO     | nevents: 400
[2025-07-27 21:18:57] 2025-07-28 01:18:26,029 | INFO     | neventsw: 0
[2025-07-27 21:18:57] 2025-07-28 01:18:26,029 | INFO     | pid: 18406
[2025-07-27 21:18:57] 2025-07-28 01:18:26,030 | INFO     | pgrp: 18406
[2025-07-27 21:18:57] 2025-07-28 01:18:26,030 | INFO     | corecount: 12
[2025-07-27 21:18:57] 2025-07-28 01:18:26,030 | INFO     | event service: False
[2025-07-27 21:18:57] 2025-07-28 01:18:26,030 | INFO     | sizes: {0: 2397298, 1: 2397497, 5: 2397759, 11: 2397815, 4986: 2424085, 4987: 2433083, 4988: 2433267, 4993: 2433461}
[2025-07-27 21:18:57] 2025-07-28 01:18:26,030 | INFO     | --------------------------------------------------
[2025-07-27 21:18:57] 2025-07-28 01:18:26,030 | INFO     | 
[2025-07-27 21:18:57] 2025-07-28 01:18:26,030 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 21:18:57] 2025-07-28 01:18:26,056 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 21:18:57] 2025-07-28 01:18:26,056 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 21:18:57] 2025-07-28 01:18:26,056 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 21:18:57] 2025-07-28 01:18:26,057 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 21:18:57] 2025-07-28 01:18:26,057 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 21:18:57] 2025-07-28 01:18:26,057 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 21:18:57] 2025-07-28 01:18:26,057 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 21:18:57] 2025-07-28 01:18:26,057 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 21:18:57] 2025-07-28 01:18:26,057 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 21:18:57] 2025-07-28 01:18:26,058 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 21:18:57] 2025-07-28 01:18:26,058 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 21:18:57] 2025-07-28 01:18:26,058 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 21:18:57] 2025-07-28 01:18:26,058 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 21:18:57] 2025-07-28 01:18:26,058 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 21:18:57] 2025-07-28 01:18:26,058 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 21:18:57] 2025-07-28 01:18:26,058 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 21:18:57] 2025-07-28 01:18:26,059 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 21:18:57] 2025-07-28 01:18:26,059 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 21:18:57] 2025-07-28 01:18:26,059 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 21:18:57] 2025-07-28 01:18:26,059 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 21:18:57] 2025-07-28 01:18:26,059 | INFO     | job 6745351451 has completed (purged errors)
[2025-07-27 21:18:57] 2025-07-28 01:18:26,059 | INFO     | overall cleanup function is called
[2025-07-27 21:18:57] 2025-07-28 01:18:27,064 | INFO     | --- collectZombieJob: --- 10, [18406]
[2025-07-27 21:18:57] 2025-07-28 01:18:27,064 | INFO     | zombie collector waiting for pid 18406
[2025-07-27 21:18:57] 2025-07-28 01:18:27,064 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 21:18:57] 2025-07-28 01:18:27,065 | INFO     | collected zombie processes
[2025-07-27 21:18:57] 2025-07-28 01:18:27,065 | INFO     | will attempt to kill all subprocesses of pid=18406
[2025-07-27 21:18:57] 2025-07-28 01:18:27,155 | INFO     | process IDs to be killed: [18406] (in reverse order)
[2025-07-27 21:18:57] 2025-07-28 01:18:27,208 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 21:18:57] 2025-07-28 01:18:27,209 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 21:18:57] 2025-07-28 01:18:27,212 | INFO     | did not find any defunct processes belonging to 18406
[2025-07-27 21:18:57] 2025-07-28 01:18:27,216 | INFO     | did not find any defunct processes belonging to 18406
[2025-07-27 21:18:57] 2025-07-28 01:18:27,216 | INFO     | ready for new job
[2025-07-27 21:18:57] 2025-07-28 01:18:27,216 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 21:18:57] 2025-07-28 01:18:27,218 | INFO     | ***************************************
[2025-07-27 21:18:57] 2025-07-28 01:18:27,218 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 21:18:57] 2025-07-28 01:18:27,218 | INFO     | ***************************************
[2025-07-27 21:18:57] 2025-07-28 01:18:27,218 | INFO     | 
[2025-07-27 21:18:57] 2025-07-28 01:18:27,219 | INFO     | architecture information:
[2025-07-27 21:18:57] 2025-07-28 01:18:27,219 | INFO     | executing command: cat /etc/os-release
[2025-07-27 21:18:57] 2025-07-28 01:18:27,234 | INFO     | cat /etc/os-release:
[2025-07-27 21:18:57] NAME="CentOS Linux"
[2025-07-27 21:18:57] VERSION="7 (Core)"
[2025-07-27 21:18:57] ID="centos"
[2025-07-27 21:18:57] ID_LIKE="rhel fedora"
[2025-07-27 21:18:57] VERSION_ID="7"
[2025-07-27 21:18:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 21:18:57] ANSI_COLOR="0;31"
[2025-07-27 21:18:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 21:18:57] HOME_URL="https://www.centos.org/"
[2025-07-27 21:18:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 21:18:57] 
[2025-07-27 21:18:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 21:18:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 21:18:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 21:18:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 21:18:57] 
[2025-07-27 21:18:57] 2025-07-28 01:18:27,234 | INFO     | ***************************************
[2025-07-27 21:18:57] 2025-07-28 01:18:27,737 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 21:18:57] 2025-07-28 01:18:27,755 | INFO     | sufficient remaining disk space (29514268672 B)
[2025-07-27 21:18:57] 2025-07-28 01:18:27,755 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 21:18:57] 2025-07-28 01:18:27,755 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 21:18:57] 2025-07-28 01:18:27,756 | INFO     | update_server=False
[2025-07-27 21:18:57] 2025-07-28 01:18:27,756 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 21:18:57] 2025-07-28 01:18:27,756 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 21:18:57] 2025-07-28 01:18:27,756 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:18:57] 2025-07-28 01:18:27,757 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:18:57] 2025-07-28 01:18:27,757 | INFO     | aborting loop
[2025-07-27 21:18:57] 2025-07-28 01:18:27,941 | INFO     | all data control threads have been joined
[2025-07-27 21:18:57] 2025-07-28 01:18:28,708 | INFO     | all job control threads have been joined
[2025-07-27 21:18:57] 2025-07-28 01:18:28,760 | INFO     | [job] retrieve thread has finished
[2025-07-27 21:18:57] 2025-07-28 01:18:28,762 | INFO     | [job] queue monitor thread has finished
[2025-07-27 21:18:57] 2025-07-28 01:18:28,762 | INFO     | [job] job monitor thread has finished
[2025-07-27 21:18:57] 2025-07-28 01:18:28,947 | INFO     | [data] control thread has finished
[2025-07-27 21:18:57] 2025-07-28 01:18:28,958 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 21:18:57] 2025-07-28 01:18:28,963 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 21:18:57] 2025-07-28 01:18:29,116 | INFO     | all payload control threads have been joined
[2025-07-27 21:18:57] 2025-07-28 01:18:29,340 | INFO     | [payload] validate_post thread has finished
[2025-07-27 21:18:57] 2025-07-28 01:18:29,412 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 21:18:57] 2025-07-28 01:18:29,615 | INFO     | [data] copytool_in thread has finished
[2025-07-27 21:18:57] 2025-07-28 01:18:29,713 | INFO     | [job] control thread has finished
[2025-07-27 21:18:57] 2025-07-28 01:18:29,762 | INFO     | [data] copytool_out thread has finished
[2025-07-27 21:18:57] 2025-07-28 01:18:30,120 | INFO     | [payload] control thread has finished
[2025-07-27 21:18:57] 2025-07-28 01:18:30,162 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 21:18:57] 2025-07-28 01:18:30,238 | INFO     | [job] validate thread has finished
[2025-07-27 21:18:57] 2025-07-28 01:18:30,298 | INFO     | [payload] failed_post thread has finished
[2025-07-27 21:18:57] 2025-07-28 01:18:31,007 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 21:18:57] 2025-07-28 01:18:35,008 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 21:18:57] 2025-07-28 01:18:36,322 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140145608181568)>', '<ExcThread(monitor, started 140144506038016)>']
[2025-07-27 21:18:57] 2025-07-28 01:18:41,347 | INFO     | all workflow threads have been joined
[2025-07-27 21:18:57] 2025-07-28 01:18:41,347 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 21:18:57] 2025-07-28 01:18:41,348 | INFO     | traces error code: 0
[2025-07-27 21:18:57] 2025-07-28 01:18:41,348 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 21:18:57] 2025-07-28 01:18:57,545 | INFO     | PID=11003 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 21:18:57] 2025-07-28 01:18:57,545 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 21:18:57] 2025-07-28 01:18:57,545 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 21:18:57] 2025-07-28 01:18:57,545 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 21:18:57] 2025-07-28 01:18:57,545 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 21:18:57] 2025-07-28 01:18:57,545 | INFO     | [monitor] control thread has ended
[2025-07-27 21:18:57] 2025-07-28 01:18:57,622 [wrapper] ==== pilot stdout END ====
[2025-07-27 21:18:57] 2025-07-28 01:18:57,626 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 21:18:57] 2025-07-28 01:18:57,630 [wrapper] pilotpid: 11003
[2025-07-27 21:18:57] 2025-07-28 01:18:57,634 [wrapper] Pilot exit status: 0
[2025-07-27 21:18:57] 2025-07-28 01:18:57,651 [wrapper] pandaids: 6745351451
[2025-07-27 21:18:57] 2025-07-28 01:18:57,693 [wrapper] cleanup supervisor_pilot 10581 11004
[2025-07-27 21:18:57] 2025-07-28 01:18:57,697 [wrapper] Test setup, not cleaning
[2025-07-27 21:18:57] 2025-07-28 01:18:57,701 [wrapper] apfmon messages muted
[2025-07-27 21:18:57] 2025-07-28 01:18:57,705 [wrapper] ==== wrapper stdout END ====
[2025-07-27 21:18:57] 2025-07-28 01:18:57,709 [wrapper] ==== wrapper stderr END ====
[2025-07-27 21:18:57]  *** Error codes and diagnostics ***
[2025-07-27 21:18:57]     "exeErrorCode": 0,
[2025-07-27 21:18:57]     "exeErrorDiag": "",
[2025-07-27 21:18:57]     "pilotErrorCode": 0,
[2025-07-27 21:18:57]     "pilotErrorDiag": "",
[2025-07-27 21:18:57]  *** Listing of results directory ***
[2025-07-27 21:18:57] total 350964
[2025-07-27 21:18:57] -rw-r--r-- 1 boincer umatlas    530466 Jul 26 13:41 pilot3.tar.gz
[2025-07-27 21:18:57] -rwx------ 1 boincer umatlas     36292 Jul 26 13:56 runpilot2-wrapper.sh
[2025-07-27 21:18:57] -rw-r--r-- 1 boincer umatlas      5112 Jul 26 13:56 queuedata.json
[2025-07-27 21:18:57] -rw-r--r-- 1 boincer umatlas       100 Jul 27 19:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 21:18:57] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 19:54 run_atlas
[2025-07-27 21:18:57] -rw-r--r-- 1 boincer umatlas       105 Jul 27 19:54 job.xml
[2025-07-27 21:18:57] -rw-r--r-- 2 boincer umatlas 145625497 Jul 27 19:54 EVNT.45743347._002368.pool.root.1
[2025-07-27 21:18:57] drwxrwx--x 2 boincer umatlas      4096 Jul 27 19:54 shared
[2025-07-27 21:18:57] -rw-r--r-- 2 boincer umatlas    542879 Jul 27 19:54 input.tar.gz
[2025-07-27 21:18:57] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 19:54 start_atlas.sh
[2025-07-27 21:18:57] -rw-r--r-- 1 boincer umatlas         0 Jul 27 19:54 boinc_lockfile
[2025-07-27 21:18:57] -rw-r--r-- 1 boincer umatlas      2560 Jul 27 19:54 pandaJob.out
[2025-07-27 21:18:57] -rw------- 1 boincer umatlas    980125 Jul 27 19:54 agis_schedconf.cvmfs.json
[2025-07-27 21:18:57] -rw------- 1 boincer umatlas   1593052 Jul 27 19:54 agis_ddmendpoints.agis.ALL.json
[2025-07-27 21:18:57] drwx------ 4 boincer umatlas      4096 Jul 27 19:54 pilot3
[2025-07-27 21:18:57] -rw-r--r-- 1 boincer umatlas      5866 Jul 27 21:09 init_data.xml
[2025-07-27 21:18:57] -rw------- 1 boincer umatlas 208225583 Jul 27 21:17 HITS.45743349._042038.pool.root.1
[2025-07-27 21:18:57] -rw-r--r-- 1 boincer umatlas       529 Jul 27 21:17 boinc_task_state.xml
[2025-07-27 21:18:57] -rw------- 1 boincer umatlas        95 Jul 27 21:18 pilot_heartbeat.json
[2025-07-27 21:18:57] -rw------- 1 boincer umatlas      1049 Jul 27 21:18 memory_monitor_summary.json
[2025-07-27 21:18:57] -rw------- 1 boincer umatlas    350632 Jul 27 21:18 log.45743349._042038.job.log.tgz.1
[2025-07-27 21:18:57] -rw------- 1 boincer umatlas      7849 Jul 27 21:18 heartbeat.json
[2025-07-27 21:18:57] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 21:18 boinc_mmap_file
[2025-07-27 21:18:57] -rw-r--r-- 1 boincer umatlas        27 Jul 27 21:18 wrapper_checkpoint.txt
[2025-07-27 21:18:57] -rw------- 1 boincer umatlas       745 Jul 27 21:18 pilotlog.txt
[2025-07-27 21:18:57] -rw------- 1 boincer umatlas    475768 Jul 27 21:18 log.45743349._042038.job.log.1
[2025-07-27 21:18:57] -rw------- 1 boincer umatlas       357 Jul 27 21:18 output.list
[2025-07-27 21:18:57] -rw-r--r-- 1 boincer umatlas       620 Jul 27 21:18 runtime_log
[2025-07-27 21:18:57] -rw------- 1 boincer umatlas    849920 Jul 27 21:18 result.tar.gz
[2025-07-27 21:18:57] -rw------- 1 boincer umatlas       658 Jul 27 21:18 UJ5LDmxIyz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQlSLDm7hpS4m.diag
[2025-07-27 21:18:57] -rw-r--r-- 1 boincer umatlas      8657 Jul 27 21:18 runtime_log.err
[2025-07-27 21:18:57] -rw-r--r-- 1 boincer umatlas     21406 Jul 27 21:18 stderr.txt
[2025-07-27 21:18:57] HITS file was successfully produced:
[2025-07-27 21:18:57] -rw------- 1 boincer umatlas 208225583 Jul 27 21:17 shared/HITS.pool.root.1
[2025-07-27 21:18:57]  *** Contents of shared directory: ***
[2025-07-27 21:18:57] total 346948
[2025-07-27 21:18:57] -rw-r--r-- 2 boincer umatlas 145625497 Jul 27 19:54 ATLAS.root_0
[2025-07-27 21:18:57] -rw-r--r-- 2 boincer umatlas    542879 Jul 27 19:54 input.tar.gz
[2025-07-27 21:18:57] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 19:54 start_atlas.sh
[2025-07-27 21:18:57] -rw------- 1 boincer umatlas 208225583 Jul 27 21:17 HITS.pool.root.1
[2025-07-27 21:18:57] -rw------- 1 boincer umatlas    849920 Jul 27 21:18 result.tar.gz
21:18:59 (7395): run_atlas exited; CPU time 53704.725760
21:18:59 (7395): called boinc_finish(0)

</stderr_txt>
]]>

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