Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:01:45 (3186706): wrapper (7.7.26015): starting
20:01:45 (3186706): wrapper: running run_atlas (--nthreads 10)
[2025-07-27 20:01:45] Arguments: --nthreads 10
[2025-07-27 20:01:45] Threads: 10
[2025-07-27 20:01:45] Checking for CVMFS
[2025-07-27 20:01:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 20:01:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 20:01:45] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 20:01:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 20:01:45] 2.12.6.0 1588522 19074 467172 148828 2 578 28308270 32935936 19491 16776704 1 102914992 99.623 112247490 17840 http://cvmfs-s1.hpc.swin.edu.au:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 20:01:45] CVMFS is ok
[2025-07-27 20:01:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 20:01:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 20:01:45] Further information can be found at the LHC@home message board.
[2025-07-27 20:01:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 20:01:45] Checking for apptainer binary...
[2025-07-27 20:01:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 20:01:45] Running /usr/bin/apptainer --version
[2025-07-27 20:01:45] apptainer version 1.4.1-1.el9
[2025-07-27 20:01:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 20:01:45] c-3-40.aglt2.org
[2025-07-27 20:01:45] apptainer works
[2025-07-27 20:01:45] Set ATHENA_PROC_NUMBER=10
[2025-07-27 20:01:45] Set ATHENA_CORE_NUMBER=10
[2025-07-27 20:01:45] Starting ATLAS job with PandaID=6745351014
[2025-07-27 20:01:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 21:36:12]  *** The last 200 lines of the pilot log: ***
[2025-07-27 21:36:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 21:36:12]  replicas=None
[2025-07-27 21:36:12]  scope=mc23_13p6TeV
[2025-07-27 21:36:12]  status=None
[2025-07-27 21:36:12]  status_code=0
[2025-07-27 21:36:12]  storage_token=
[2025-07-27 21:36:12]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745351014/log.45743349._041927.job.log.tgz.1
[2025-07-27 21:36:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/20/ec/log.45743349._041927.job.log.tgz.1
[2025-07-27 21:36:12]  workdir=None
[2025-07-27 21:36:12] ]
[2025-07-27 21:36:12] 2025-07-28 01:35:28,834 | INFO     | transferring file log.45743349._041927.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745351014/log.45743349._041927.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 21:36:12] 2025-07-28 01:35:28,835 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745351014/log.45743349._041927.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._041927.job
[2025-07-27 21:36:12] 2025-07-28 01:35:28,858 | INFO     | adding to output.list: log.45743349._041927.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/20/ec/log.45743349._041927.job.log.tg
[2025-07-27 21:36:12] 2025-07-28 01:35:28,859 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 21:36:12] 2025-07-28 01:35:28,860 | INFO     | summary of transferred files:
[2025-07-27 21:36:12] 2025-07-28 01:35:28,860 | INFO     |  -- lfn=log.45743349._041927.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 21:36:12] 2025-07-28 01:35:28,860 | INFO     | stage-out finished correctly
[2025-07-27 21:36:12] 2025-07-28 01:35:29,532 | INFO     | monitor loop #388: job 0:6745351014 is in state 'finished'
[2025-07-27 21:36:12] 2025-07-28 01:35:29,533 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:36:12] 2025-07-28 01:35:30,224 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 21:36:12] 2025-07-28 01:35:32,036 | INFO     | monitor loop #389: job 0:6745351014 is in state 'finished'
[2025-07-27 21:36:12] 2025-07-28 01:35:32,036 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:36:12] 2025-07-28 01:35:32,553 | INFO     | job 6745351014 has state=finished
[2025-07-27 21:36:12] 2025-07-28 01:35:32,554 | INFO     | preparing for final server update for job 6745351014 in state='finished'
[2025-07-27 21:36:12] 2025-07-28 01:35:32,554 | INFO     | this job has now completed (state=finished)
[2025-07-27 21:36:12] 2025-07-28 01:35:32,555 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 21:36:12] 2025-07-28 01:35:32,555 | INFO     | log transfer has been attempted: DONE
[2025-07-27 21:36:12] 2025-07-28 01:35:32,555 | INFO     | job 6745351014 has finished - writing final server update
[2025-07-27 21:36:12] 2025-07-28 01:35:32,555 | INFO     | total number of processed events: 400 (read)
[2025-07-27 21:36:12] 2025-07-28 01:35:32,556 | INFO     | executing command: lscpu
[2025-07-27 21:36:12] 2025-07-28 01:35:32,634 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 21:36:12] 2025-07-28 01:35:34,540 | INFO     | monitor loop #390: job 0:6745351014 is in state 'finished'
[2025-07-27 21:36:12] 2025-07-28 01:35:34,541 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:36:12] 2025-07-28 01:35:37,044 | INFO     | monitor loop #391: job 0:6745351014 is in state 'finished'
[2025-07-27 21:36:12] 2025-07-28 01:35:37,044 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:36:12] 2025-07-28 01:35:38,035 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 21:36:12] 2025-07-28 01:35:38,046 | INFO     | found 40 cores (20 cores per socket, 2 sockets) HT, CPU MHz: 2660.2714374999996
[2025-07-27 21:36:12] 2025-07-28 01:35:38,060 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745351014/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 21:36:12] 2025-07-28 01:35:38,061 | INFO     | extracted standard info from prmon json
[2025-07-27 21:36:12] 2025-07-28 01:35:38,061 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 21:36:12] 2025-07-28 01:35:38,061 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 21:36:12] 2025-07-28 01:35:38,061 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 21:36:12] 2025-07-28 01:35:38,062 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 21:36:12] 2025-07-28 01:35:38,064 | INFO     | fitting pss+swap vs Time
[2025-07-27 21:36:12] 2025-07-28 01:35:38,064 | INFO     | sum of square deviations: 190405156.98823565
[2025-07-27 21:36:12] 2025-07-28 01:35:38,064 | INFO     | sum of deviations: -3046994880.894118
[2025-07-27 21:36:12] 2025-07-28 01:35:38,064 | INFO     | mean x: 1753663826.0117648
[2025-07-27 21:36:12] 2025-07-28 01:35:38,065 | INFO     | mean y: 2294474.894117647
[2025-07-27 21:36:12] 2025-07-28 01:35:38,065 | INFO     | -- intersect: 28065634697.329308
[2025-07-27 21:36:12] 2025-07-28 01:35:38,065 | INFO     | intersect: 28065634697.329308
[2025-07-27 21:36:12] 2025-07-28 01:35:38,065 | INFO     | chi2: 0.0571916119900918
[2025-07-27 21:36:12] 2025-07-28 01:35:38,065 | INFO     | -- intersect: 28065634697.329308
[2025-07-27 21:36:12] 2025-07-28 01:35:38,065 | INFO     | current memory leak: -16.00 B/s (using 85 data points, chi2=0.06)
[2025-07-27 21:36:12] 2025-07-28 01:35:38,066 | INFO     | could have reported an average CPU frequency of 2633 MHz (7 samples)
[2025-07-27 21:36:12] 2025-07-28 01:35:38,066 | INFO     | ..............................
[2025-07-27 21:36:12] 2025-07-28 01:35:38,066 | INFO     | . Timing measurements:
[2025-07-27 21:36:12] 2025-07-28 01:35:38,066 | INFO     | . get job = 0 s
[2025-07-27 21:36:12] 2025-07-28 01:35:38,066 | INFO     | . initial setup = 2 s
[2025-07-27 21:36:12] 2025-07-28 01:35:38,066 | INFO     | . payload setup = 10 s
[2025-07-27 21:36:12] 2025-07-28 01:35:38,066 | INFO     | . stage-in = 0 s
[2025-07-27 21:36:12] 2025-07-28 01:35:38,066 | INFO     | . payload execution = 5573 s
[2025-07-27 21:36:12] 2025-07-28 01:35:38,066 | INFO     | . stage-out = 0 s
[2025-07-27 21:36:12] 2025-07-28 01:35:38,066 | INFO     | . log creation = 0 s
[2025-07-27 21:36:12] 2025-07-28 01:35:38,066 | INFO     | ..............................
[2025-07-27 21:36:12] 2025-07-28 01:35:38,524 | INFO     | 
[2025-07-27 21:36:12] 2025-07-28 01:35:38,524 | INFO     | job summary report
[2025-07-27 21:36:12] 2025-07-28 01:35:38,525 | INFO     | --------------------------------------------------
[2025-07-27 21:36:12] 2025-07-28 01:35:38,525 | INFO     | PanDA job id: 6745351014
[2025-07-27 21:36:12] 2025-07-28 01:35:38,525 | INFO     | task id: 45743349
[2025-07-27 21:36:12] 2025-07-28 01:35:38,525 | INFO     | errors: (none)
[2025-07-27 21:36:12] 2025-07-28 01:35:38,525 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 21:36:12] 2025-07-28 01:35:38,525 | INFO     | pilot state: finished 
[2025-07-27 21:36:12] 2025-07-28 01:35:38,525 | INFO     | transexitcode: 0
[2025-07-27 21:36:12] 2025-07-28 01:35:38,525 | INFO     | exeerrorcode: 0
[2025-07-27 21:36:12] 2025-07-28 01:35:38,525 | INFO     | exeerrordiag: 
[2025-07-27 21:36:12] 2025-07-28 01:35:38,525 | INFO     | exitcode: 0
[2025-07-27 21:36:12] 2025-07-28 01:35:38,525 | INFO     | exitmsg: OK
[2025-07-27 21:36:12] 2025-07-28 01:35:38,525 | INFO     | cpuconsumptiontime: 45884 s
[2025-07-27 21:36:12] 2025-07-28 01:35:38,525 | INFO     | nevents: 400
[2025-07-27 21:36:12] 2025-07-28 01:35:38,526 | INFO     | neventsw: 0
[2025-07-27 21:36:12] 2025-07-28 01:35:38,526 | INFO     | pid: 3197494
[2025-07-27 21:36:12] 2025-07-28 01:35:38,526 | INFO     | pgrp: 3197494
[2025-07-27 21:36:12] 2025-07-28 01:35:38,526 | INFO     | corecount: 10
[2025-07-27 21:36:12] 2025-07-28 01:35:38,526 | INFO     | event service: False
[2025-07-27 21:36:12] 2025-07-28 01:35:38,526 | INFO     | sizes: {0: 2397304, 1: 2397503, 7: 2397765, 11: 2397793, 5588: 2424324, 5589: 2433322, 5590: 2433506, 5598: 2433700}
[2025-07-27 21:36:12] 2025-07-28 01:35:38,526 | INFO     | --------------------------------------------------
[2025-07-27 21:36:12] 2025-07-28 01:35:38,526 | INFO     | 
[2025-07-27 21:36:12] 2025-07-28 01:35:38,526 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 21:36:12] 2025-07-28 01:35:38,551 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 21:36:12] 2025-07-28 01:35:38,552 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 21:36:12] 2025-07-28 01:35:38,552 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 21:36:12] 2025-07-28 01:35:38,552 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 21:36:12] 2025-07-28 01:35:38,552 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 21:36:12] 2025-07-28 01:35:38,552 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 21:36:12] 2025-07-28 01:35:38,553 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 21:36:12] 2025-07-28 01:35:38,553 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 21:36:12] 2025-07-28 01:35:38,553 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 21:36:12] 2025-07-28 01:35:38,553 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 21:36:12] 2025-07-28 01:35:38,553 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 21:36:12] 2025-07-28 01:35:38,553 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 21:36:12] 2025-07-28 01:35:38,553 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 21:36:12] 2025-07-28 01:35:38,553 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 21:36:12] 2025-07-28 01:35:38,553 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 21:36:12] 2025-07-28 01:35:38,553 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 21:36:12] 2025-07-28 01:35:38,553 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 21:36:12] 2025-07-28 01:35:38,554 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 21:36:12] 2025-07-28 01:35:38,554 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 21:36:12] 2025-07-28 01:35:38,554 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 21:36:12] 2025-07-28 01:35:38,554 | INFO     | job 6745351014 has completed (purged errors)
[2025-07-27 21:36:12] 2025-07-28 01:35:38,554 | INFO     | overall cleanup function is called
[2025-07-27 21:36:12] 2025-07-28 01:35:39,562 | INFO     | --- collectZombieJob: --- 10, [3197494]
[2025-07-27 21:36:12] 2025-07-28 01:35:39,562 | INFO     | zombie collector waiting for pid 3197494
[2025-07-27 21:36:12] 2025-07-28 01:35:39,563 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 21:36:12] 2025-07-28 01:35:39,563 | INFO     | collected zombie processes
[2025-07-27 21:36:12] 2025-07-28 01:35:39,563 | INFO     | will attempt to kill all subprocesses of pid=3197494
[2025-07-27 21:36:12] 2025-07-28 01:35:39,969 | INFO     | process IDs to be killed: [3197494] (in reverse order)
[2025-07-27 21:36:12] 2025-07-28 01:35:40,101 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 21:36:12] 2025-07-28 01:35:40,102 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 21:36:12] 2025-07-28 01:35:40,118 | INFO     | did not find any defunct processes belonging to 3197494
[2025-07-27 21:36:12] 2025-07-28 01:35:40,135 | INFO     | did not find any defunct processes belonging to 3197494
[2025-07-27 21:36:12] 2025-07-28 01:35:40,136 | INFO     | ready for new job
[2025-07-27 21:36:12] 2025-07-28 01:35:40,136 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 21:36:12] 2025-07-28 01:35:40,139 | INFO     | ***************************************
[2025-07-27 21:36:12] 2025-07-28 01:35:40,139 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 21:36:12] 2025-07-28 01:35:40,139 | INFO     | ***************************************
[2025-07-27 21:36:12] 2025-07-28 01:35:40,140 | INFO     | 
[2025-07-27 21:36:12] 2025-07-28 01:35:40,158 | INFO     | architecture information:
[2025-07-27 21:36:12] 2025-07-28 01:35:40,158 | INFO     | executing command: cat /etc/os-release
[2025-07-27 21:36:12] 2025-07-28 01:35:40,177 | INFO     | cat /etc/os-release:
[2025-07-27 21:36:12] NAME="CentOS Linux"
[2025-07-27 21:36:12] VERSION="7 (Core)"
[2025-07-27 21:36:12] ID="centos"
[2025-07-27 21:36:12] ID_LIKE="rhel fedora"
[2025-07-27 21:36:12] VERSION_ID="7"
[2025-07-27 21:36:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 21:36:12] ANSI_COLOR="0;31"
[2025-07-27 21:36:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 21:36:12] HOME_URL="https://www.centos.org/"
[2025-07-27 21:36:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 21:36:12] 
[2025-07-27 21:36:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 21:36:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 21:36:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 21:36:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 21:36:12] 
[2025-07-27 21:36:12] 2025-07-28 01:35:40,177 | INFO     | ***************************************
[2025-07-27 21:36:12] 2025-07-28 01:35:40,680 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 21:36:12] 2025-07-28 01:35:40,701 | INFO     | sufficient remaining disk space (76072091648 B)
[2025-07-27 21:36:12] 2025-07-28 01:35:40,701 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 21:36:12] 2025-07-28 01:35:40,702 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 21:36:12] 2025-07-28 01:35:40,702 | INFO     | update_server=False
[2025-07-27 21:36:12] 2025-07-28 01:35:40,702 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 21:36:12] 2025-07-28 01:35:40,702 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:36:12] 2025-07-28 01:35:40,702 | INFO     | aborting loop
[2025-07-27 21:36:12] 2025-07-28 01:35:40,836 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 21:36:12] 2025-07-28 01:35:41,235 | INFO     | all job control threads have been joined
[2025-07-27 21:36:12] 2025-07-28 01:35:41,639 | INFO     | all data control threads have been joined
[2025-07-27 21:36:12] 2025-07-28 01:35:41,707 | INFO     | [job] retrieve thread has finished
[2025-07-27 21:36:12] 2025-07-28 01:35:41,709 | INFO     | [job] job monitor thread has finished
[2025-07-27 21:36:12] 2025-07-28 01:35:41,941 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 21:36:12] 2025-07-28 01:35:41,967 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 21:36:12] 2025-07-28 01:35:41,987 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 21:36:12] 2025-07-28 01:35:42,013 | INFO     | all payload control threads have been joined
[2025-07-27 21:36:12] 2025-07-28 01:35:42,204 | INFO     | [data] copytool_in thread has finished
[2025-07-27 21:36:12] 2025-07-28 01:35:42,240 | INFO     | [job] control thread has finished
[2025-07-27 21:36:12] 2025-07-28 01:35:42,375 | INFO     | [job] validate thread has finished
[2025-07-27 21:36:12] 2025-07-28 01:35:42,584 | INFO     | [payload] failed_post thread has finished
[2025-07-27 21:36:12] 2025-07-28 01:35:42,645 | INFO     | [data] control thread has finished
[2025-07-27 21:36:12] 2025-07-28 01:35:42,958 | INFO     | [payload] validate_post thread has finished
[2025-07-27 21:36:12] 2025-07-28 01:35:43,018 | INFO     | [payload] control thread has finished
[2025-07-27 21:36:12] 2025-07-28 01:35:43,028 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 21:36:12] 2025-07-28 01:35:43,179 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:36:12] 2025-07-28 01:35:43,992 | INFO     | [data] copytool_out thread has finished
[2025-07-27 21:36:12] 2025-07-28 01:35:44,184 | INFO     | [job] queue monitor thread has finished
[2025-07-27 21:36:12] 2025-07-28 01:35:44,843 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 21:36:12] 2025-07-28 01:35:51,708 | INFO     | job.realtimelogging is not enabled
[2025-07-27 21:36:12] 2025-07-28 01:35:52,717 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 21:36:12] 2025-07-28 01:35:54,381 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140630240540480)>', '<ExcThread(monitor, started 140629887665920)>']
[2025-07-27 21:36:12] 2025-07-28 01:35:59,408 | INFO     | all workflow threads have been joined
[2025-07-27 21:36:12] 2025-07-28 01:35:59,409 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 21:36:12] 2025-07-28 01:35:59,409 | INFO     | traces error code: 0
[2025-07-27 21:36:12] 2025-07-28 01:35:59,410 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 21:36:12] 2025-07-28 01:36:12,029 | INFO     | PID=3191070 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 21:36:12] 2025-07-28 01:36:12,030 | INFO     | .. there are 23 such processes running
[2025-07-27 21:36:12] 2025-07-28 01:36:12,032 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 21:36:12] 2025-07-28 01:36:12,032 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 21:36:12] 2025-07-28 01:36:12,032 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 21:36:12] 2025-07-28 01:36:12,033 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 21:36:12] 2025-07-28 01:36:12,033 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 21:36:12] 2025-07-28 01:36:12,033 | INFO     | [monitor] control thread has ended
[2025-07-27 21:36:12] 2025-07-28 01:36:12,300 [wrapper] ==== pilot stdout END ====
[2025-07-27 21:36:12] 2025-07-28 01:36:12,308 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 21:36:12] 2025-07-28 01:36:12,314 [wrapper] pilotpid: 3191070
[2025-07-27 21:36:12] 2025-07-28 01:36:12,321 [wrapper] Pilot exit status: 0
[2025-07-27 21:36:12] 2025-07-28 01:36:12,346 [wrapper] pandaids: 6745351014
[2025-07-27 21:36:12] 2025-07-28 01:36:12,452 [wrapper] cleanup supervisor_pilot 3506574 3191071
[2025-07-27 21:36:12] 2025-07-28 01:36:12,459 [wrapper] Test setup, not cleaning
[2025-07-27 21:36:12] 2025-07-28 01:36:12,465 [wrapper] apfmon messages muted
[2025-07-27 21:36:12] 2025-07-28 01:36:12,474 [wrapper] ==== wrapper stdout END ====
[2025-07-27 21:36:12] 2025-07-28 01:36:12,477 [wrapper] ==== wrapper stderr END ====
[2025-07-27 21:36:12]  *** Error codes and diagnostics ***
[2025-07-27 21:36:12]     "exeErrorCode": 0,
[2025-07-27 21:36:12]     "exeErrorDiag": "",
[2025-07-27 21:36:12]     "pilotErrorCode": 0,
[2025-07-27 21:36:12]     "pilotErrorDiag": "",
[2025-07-27 21:36:12]  *** Listing of results directory ***
[2025-07-27 21:36:12] total 430444
[2025-07-27 21:36:12] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 13:41 pilot3.tar.gz
[2025-07-27 21:36:12] -rwx------. 1 boincer umatlas     36292 Jul 26 13:51 runpilot2-wrapper.sh
[2025-07-27 21:36:12] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 13:51 queuedata.json
[2025-07-27 21:36:12] -rw-r--r--. 1 boincer umatlas       100 Jul 27 20:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 21:36:12] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 20:01 run_atlas
[2025-07-27 21:36:12] -rw-r--r--. 1 boincer umatlas       105 Jul 27 20:01 job.xml
[2025-07-27 21:36:12] -rw-r--r--. 2 boincer umatlas 232040943 Jul 27 20:01 EVNT.45743347._002363.pool.root.1
[2025-07-27 21:36:12] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 20:01 start_atlas.sh
[2025-07-27 21:36:12] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 20:01 shared
[2025-07-27 21:36:12] -rw-r--r--. 2 boincer umatlas    542895 Jul 27 20:01 input.tar.gz
[2025-07-27 21:36:12] -rw-r--r--. 1 boincer umatlas         0 Jul 27 20:01 boinc_lockfile
[2025-07-27 21:36:12] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 20:01 pandaJob.out
[2025-07-27 21:36:12] -rw-------. 1 boincer umatlas    980125 Jul 27 20:01 agis_schedconf.cvmfs.json
[2025-07-27 21:36:12] -rw-------. 1 boincer umatlas   1593052 Jul 27 20:02 agis_ddmendpoints.agis.ALL.json
[2025-07-27 21:36:12] drwx------. 4 boincer umatlas      4096 Jul 27 20:02 pilot3
[2025-07-27 21:36:12] -rw-r--r--. 1 boincer umatlas      6840 Jul 27 21:30 init_data.xml
[2025-07-27 21:36:12] -rw-------. 1 boincer umatlas 203139826 Jul 27 21:34 HITS.45743349._041927.pool.root.1
[2025-07-27 21:36:12] -rw-r--r--. 1 boincer umatlas       529 Jul 27 21:34 boinc_task_state.xml
[2025-07-27 21:36:12] -rw-------. 1 boincer umatlas      1038 Jul 27 21:35 memory_monitor_summary.json
[2025-07-27 21:36:12] -rw-------. 1 boincer umatlas    335240 Jul 27 21:35 log.45743349._041927.job.log.tgz.1
[2025-07-27 21:36:12] -rw-------. 1 boincer umatlas      7830 Jul 27 21:35 heartbeat.json
[2025-07-27 21:36:12] -rw-r--r--. 1 boincer umatlas        27 Jul 27 21:36 wrapper_checkpoint.txt
[2025-07-27 21:36:12] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 21:36 boinc_mmap_file
[2025-07-27 21:36:12] -rw-------. 1 boincer umatlas        95 Jul 27 21:36 pilot_heartbeat.json
[2025-07-27 21:36:12] -rw-------. 1 boincer umatlas       893 Jul 27 21:36 pilotlog.txt
[2025-07-27 21:36:12] -rw-------. 1 boincer umatlas    525951 Jul 27 21:36 log.45743349._041927.job.log.1
[2025-07-27 21:36:12] -rw-------. 1 boincer umatlas       357 Jul 27 21:36 output.list
[2025-07-27 21:36:12] -rw-r--r--. 1 boincer umatlas       620 Jul 27 21:36 runtime_log
[2025-07-27 21:36:12] -rw-------. 1 boincer umatlas    880640 Jul 27 21:36 result.tar.gz
[2025-07-27 21:36:12] -rw-r--r--. 1 boincer umatlas      8652 Jul 27 21:36 runtime_log.err
[2025-07-27 21:36:12] -rw-------. 1 boincer umatlas       650 Jul 27 21:36 cLhLDmsEyz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmQB1KDmtPR6Pm.diag
[2025-07-27 21:36:12] -rw-r--r--. 1 boincer umatlas     21901 Jul 27 21:36 stderr.txt
[2025-07-27 21:36:12] HITS file was successfully produced:
[2025-07-27 21:36:12] -rw-------. 1 boincer umatlas 203139826 Jul 27 21:34 shared/HITS.pool.root.1
[2025-07-27 21:36:12]  *** Contents of shared directory: ***
[2025-07-27 21:36:12] total 426396
[2025-07-27 21:36:12] -rw-r--r--. 2 boincer umatlas 232040943 Jul 27 20:01 ATLAS.root_0
[2025-07-27 21:36:12] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 20:01 start_atlas.sh
[2025-07-27 21:36:12] -rw-r--r--. 2 boincer umatlas    542895 Jul 27 20:01 input.tar.gz
[2025-07-27 21:36:12] -rw-------. 1 boincer umatlas 203139826 Jul 27 21:34 HITS.pool.root.1
[2025-07-27 21:36:12] -rw-------. 1 boincer umatlas    880640 Jul 27 21:36 result.tar.gz
21:36:14 (3186706): run_atlas exited; CPU time 46044.238096
21:36:14 (3186706): called boinc_finish(0)

</stderr_txt>
]]>

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