Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:17:55 (2479289): wrapper (7.7.26015): starting
20:17:55 (2479289): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 20:17:55] Arguments: --nthreads 8
[2025-07-27 20:17:55] Threads: 8
[2025-07-27 20:17:55] Checking for CVMFS
[2025-07-27 20:17:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 20:17:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 20:17:55] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 20:17:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 20:17:55] 2.13.1.0 704839 14832 154288 148828 3 196 32381700 40960000 9629 16776704 0 45661455 99.894 17317931 42284 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 20:17:55] CVMFS is ok
[2025-07-27 20:17:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 20:17:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 20:17:55] Further information can be found at the LHC@home message board.
[2025-07-27 20:17:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 20:17:55] Checking for apptainer binary...
[2025-07-27 20:17:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 20:17:55] Running /usr/bin/apptainer --version
[2025-07-27 20:17:55] apptainer version 1.4.1-1.el9
[2025-07-27 20:17:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 20:17:55] c-212-4.aglt2.org
[2025-07-27 20:17:55] apptainer works
[2025-07-27 20:17:55] Set ATHENA_PROC_NUMBER=8
[2025-07-27 20:17:55] Set ATHENA_CORE_NUMBER=8
[2025-07-27 20:17:55] Starting ATLAS job with PandaID=6744842810
[2025-07-27 20:17:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 21:40:21]  *** The last 200 lines of the pilot log: ***
[2025-07-27 21:40:21] ]
[2025-07-27 21:40:21] 2025-07-28 01:39:43,036 | INFO     | transferring file log.45743349._002699.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6744842810/log.45743349._002699.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 21:40:21] 2025-07-28 01:39:43,037 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6744842810/log.45743349._002699.job.log.tgz.1 /tmp/boinchome/slots/3/log.45743349._002699.job
[2025-07-27 21:40:21] 2025-07-28 01:39:43,058 | INFO     | adding to output.list: log.45743349._002699.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/28/23/log.45743349._002699.job.log.tg
[2025-07-27 21:40:21] 2025-07-28 01:39:43,059 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 21:40:21] 2025-07-28 01:39:43,059 | INFO     | summary of transferred files:
[2025-07-27 21:40:21] 2025-07-28 01:39:43,059 | INFO     |  -- lfn=log.45743349._002699.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 21:40:21] 2025-07-28 01:39:43,059 | INFO     | stage-out finished correctly
[2025-07-27 21:40:21] 2025-07-28 01:39:43,137 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 21:40:21] 2025-07-28 01:39:43,431 | INFO     | job 6744842810 has state=finished
[2025-07-27 21:40:21] 2025-07-28 01:39:43,432 | INFO     | preparing for final server update for job 6744842810 in state='finished'
[2025-07-27 21:40:21] 2025-07-28 01:39:43,491 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-27 21:40:21] 2025-07-28 01:39:43,492 | INFO     | this job has now completed (state=finished)
[2025-07-27 21:40:21] 2025-07-28 01:39:43,492 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 21:40:21] 2025-07-28 01:39:43,492 | INFO     | log transfer has been attempted: DONE
[2025-07-27 21:40:21] 2025-07-28 01:39:43,492 | INFO     | job 6744842810 has finished - writing final server update
[2025-07-27 21:40:21] 2025-07-28 01:39:43,492 | INFO     | total number of processed events: 400 (read)
[2025-07-27 21:40:21] 2025-07-28 01:39:43,493 | INFO     | executing command: lscpu
[2025-07-27 21:40:21] 2025-07-28 01:39:43,557 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 21:40:21] 2025-07-28 01:39:44,922 | WARNING  | process 2494520 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 21:40:21] 2025-07-28 01:39:44,923 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6744842810/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 21:40:21] 2025-07-28 01:39:44,923 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6744842810/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 21:40:21] 2025-07-28 01:39:44,925 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3618968 B
[2025-07-27 21:40:21] 2025-07-28 01:39:44,925 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16010 B
[2025-07-27 21:40:21] 2025-07-28 01:39:44,925 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-07-27 21:40:21] 2025-07-28 01:39:48,075 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 21:40:21] 2025-07-28 01:39:48,088 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3298.731041666666
[2025-07-27 21:40:21] 2025-07-28 01:39:48,090 | INFO     | sufficient remaining disk space (124267790336 B)
[2025-07-27 21:40:21] 2025-07-28 01:39:48,091 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-27 21:40:21] 2025-07-28 01:39:48,092 | INFO     | size of work directory /tmp/boinchome/slots/3/PanDA_Pilot-6744842810: 3942297 B (within 2537553920 B limit)
[2025-07-27 21:40:21] 2025-07-28 01:39:48,092 | INFO     | pfn file=/tmp/boinchome/slots/3/PanDA_Pilot-6744842810/HITS.45743349._002699.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-27 21:40:21] 2025-07-28 01:39:48,093 | INFO     | total size of present files: 0 B (workdir size: 3942297 B)
[2025-07-27 21:40:21] 2025-07-28 01:39:48,093 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/3/PanDA_Pilot-6744842810/HITS.45743349._002699.pool.root.1 since it does not exist
[2025-07-27 21:40:21] 2025-07-28 01:39:48,106 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6744842810/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 21:40:21] 2025-07-28 01:39:48,107 | INFO     | extracted standard info from prmon json
[2025-07-27 21:40:21] 2025-07-28 01:39:48,108 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 21:40:21] 2025-07-28 01:39:48,108 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 21:40:21] 2025-07-28 01:39:48,108 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 21:40:21] 2025-07-28 01:39:48,109 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 21:40:21] 2025-07-28 01:39:48,110 | INFO     | fitting pss+swap vs Time
[2025-07-27 21:40:21] 2025-07-28 01:39:48,111 | INFO     | sum of square deviations: 120605052.0
[2025-07-27 21:40:21] 2025-07-28 01:39:48,111 | INFO     | sum of deviations: 285182015.0
[2025-07-27 21:40:21] 2025-07-28 01:39:48,111 | INFO     | mean x: 1753664417.0
[2025-07-27 21:40:21] 2025-07-28 01:39:48,112 | INFO     | mean y: 2528878.904109589
[2025-07-27 21:40:21] 2025-07-28 01:39:48,112 | INFO     | -- intersect: -4144175954.6036963
[2025-07-27 21:40:21] 2025-07-28 01:39:48,112 | INFO     | intersect: -4144175954.6036963
[2025-07-27 21:40:21] 2025-07-28 01:39:48,112 | INFO     | chi2: 0.0008520823685096801
[2025-07-27 21:40:21] 2025-07-28 01:39:48,113 | INFO     | -- intersect: -4144175954.6036963
[2025-07-27 21:40:21] 2025-07-28 01:39:48,113 | INFO     | current memory leak: 2.36 B/s (using 73 data points, chi2=0.00)
[2025-07-27 21:40:21] 2025-07-28 01:39:48,113 | INFO     | could have reported an average CPU frequency of 3286 MHz (6 samples)
[2025-07-27 21:40:21] 2025-07-28 01:39:48,114 | INFO     | ..............................
[2025-07-27 21:40:21] 2025-07-28 01:39:48,114 | INFO     | . Timing measurements:
[2025-07-27 21:40:21] 2025-07-28 01:39:48,114 | INFO     | . get job = 0 s
[2025-07-27 21:40:21] 2025-07-28 01:39:48,114 | INFO     | . initial setup = 2 s
[2025-07-27 21:40:21] 2025-07-28 01:39:48,114 | INFO     | . payload setup = 6 s
[2025-07-27 21:40:21] 2025-07-28 01:39:48,114 | INFO     | . stage-in = 0 s
[2025-07-27 21:40:21] 2025-07-28 01:39:48,114 | INFO     | . payload execution = 4868 s
[2025-07-27 21:40:21] 2025-07-28 01:39:48,114 | INFO     | . stage-out = 0 s
[2025-07-27 21:40:21] 2025-07-28 01:39:48,114 | INFO     | . log creation = 0 s
[2025-07-27 21:40:21] 2025-07-28 01:39:48,115 | INFO     | ..............................
[2025-07-27 21:40:21] 2025-07-28 01:39:48,194 | INFO     | 
[2025-07-27 21:40:21] 2025-07-28 01:39:48,194 | INFO     | job summary report
[2025-07-27 21:40:21] 2025-07-28 01:39:48,195 | INFO     | --------------------------------------------------
[2025-07-27 21:40:21] 2025-07-28 01:39:48,195 | INFO     | PanDA job id: 6744842810
[2025-07-27 21:40:21] 2025-07-28 01:39:48,195 | INFO     | task id: 45743349
[2025-07-27 21:40:21] 2025-07-28 01:39:48,195 | INFO     | errors: (none)
[2025-07-27 21:40:21] 2025-07-28 01:39:48,196 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 21:40:21] 2025-07-28 01:39:48,196 | INFO     | pilot state: finished 
[2025-07-27 21:40:21] 2025-07-28 01:39:48,196 | INFO     | transexitcode: 0
[2025-07-27 21:40:21] 2025-07-28 01:39:48,196 | INFO     | exeerrorcode: 0
[2025-07-27 21:40:21] 2025-07-28 01:39:48,196 | INFO     | exeerrordiag: 
[2025-07-27 21:40:21] 2025-07-28 01:39:48,197 | INFO     | exitcode: 0
[2025-07-27 21:40:21] 2025-07-28 01:39:48,197 | INFO     | exitmsg: OK
[2025-07-27 21:40:21] 2025-07-28 01:39:48,197 | INFO     | cpuconsumptiontime: 35628 s
[2025-07-27 21:40:21] 2025-07-28 01:39:48,197 | INFO     | nevents: 400
[2025-07-27 21:40:21] 2025-07-28 01:39:48,198 | INFO     | neventsw: 0
[2025-07-27 21:40:21] 2025-07-28 01:39:48,198 | INFO     | pid: 2494520
[2025-07-27 21:40:21] 2025-07-28 01:39:48,199 | INFO     | pgrp: 2494520
[2025-07-27 21:40:21] 2025-07-28 01:39:48,199 | INFO     | corecount: 8
[2025-07-27 21:40:21] 2025-07-28 01:39:48,199 | INFO     | event service: False
[2025-07-27 21:40:21] 2025-07-28 01:39:48,199 | INFO     | sizes: {0: 2397298, 1: 2397497, 6: 2397759, 12: 2397787, 4879: 2423896, 4880: 2433078, 4885: 2433244}
[2025-07-27 21:40:21] 2025-07-28 01:39:48,199 | INFO     | --------------------------------------------------
[2025-07-27 21:40:21] 2025-07-28 01:39:48,199 | INFO     | 
[2025-07-27 21:40:21] 2025-07-28 01:39:48,199 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-07-27 21:40:21] 2025-07-28 01:39:48,222 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 21:40:21] 2025-07-28 01:39:48,222 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 21:40:21] 2025-07-28 01:39:48,223 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 21:40:21] 2025-07-28 01:39:48,223 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 21:40:21] 2025-07-28 01:39:48,223 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 21:40:21] 2025-07-28 01:39:48,223 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 21:40:21] 2025-07-28 01:39:48,223 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 21:40:21] 2025-07-28 01:39:48,224 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 21:40:21] 2025-07-28 01:39:48,224 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 21:40:21] 2025-07-28 01:39:48,224 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 21:40:21] 2025-07-28 01:39:48,224 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 21:40:21] 2025-07-28 01:39:48,224 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 21:40:21] 2025-07-28 01:39:48,224 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 21:40:21] 2025-07-28 01:39:48,225 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 21:40:21] 2025-07-28 01:39:48,225 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 21:40:21] 2025-07-28 01:39:48,225 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 21:40:21] 2025-07-28 01:39:48,225 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 21:40:21] 2025-07-28 01:39:48,225 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 21:40:21] 2025-07-28 01:39:48,226 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 21:40:21] 2025-07-28 01:39:48,226 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 21:40:21] 2025-07-28 01:39:48,226 | INFO     | job 6744842810 has completed (purged errors)
[2025-07-27 21:40:21] 2025-07-28 01:39:48,226 | INFO     | overall cleanup function is called
[2025-07-27 21:40:21] 2025-07-28 01:39:48,350 | INFO     | PID=2488085 has CPU usage=10.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-27 21:40:21] 2025-07-28 01:39:48,350 | INFO     | .. there are 13 such processes running
[2025-07-27 21:40:21] 2025-07-28 01:39:48,624 | INFO     | number of running child processes to parent process 2494520: 1
[2025-07-27 21:40:21] 2025-07-28 01:39:48,625 | INFO     | maximum number of monitored processes: 6
[2025-07-27 21:40:21] 2025-07-28 01:39:48,625 | INFO     | aborting job monitoring since job object (job id=6744842810) has expired
[2025-07-27 21:40:21] 2025-07-28 01:39:49,237 | INFO     | --- collectZombieJob: --- 10, [2494520]
[2025-07-27 21:40:21] 2025-07-28 01:39:49,238 | INFO     | zombie collector waiting for pid 2494520
[2025-07-27 21:40:21] 2025-07-28 01:39:49,238 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 21:40:21] 2025-07-28 01:39:49,238 | INFO     | collected zombie processes
[2025-07-27 21:40:21] 2025-07-28 01:39:49,238 | INFO     | will attempt to kill all subprocesses of pid=2494520
[2025-07-27 21:40:21] 2025-07-28 01:39:49,589 | INFO     | process IDs to be killed: [2494520] (in reverse order)
[2025-07-27 21:40:21] 2025-07-28 01:39:49,703 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 21:40:21] 2025-07-28 01:39:49,703 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 21:40:21] 2025-07-28 01:39:49,717 | INFO     | did not find any defunct processes belonging to 2494520
[2025-07-27 21:40:21] 2025-07-28 01:39:49,727 | INFO     | did not find any defunct processes belonging to 2494520
[2025-07-27 21:40:21] 2025-07-28 01:39:49,727 | INFO     | ready for new job
[2025-07-27 21:40:21] 2025-07-28 01:39:49,727 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 21:40:21] 2025-07-28 01:39:49,729 | INFO     | ***************************************
[2025-07-27 21:40:21] 2025-07-28 01:39:49,729 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 21:40:21] 2025-07-28 01:39:49,729 | INFO     | ***************************************
[2025-07-27 21:40:21] 2025-07-28 01:39:49,729 | INFO     | 
[2025-07-27 21:40:21] 2025-07-28 01:39:49,733 | INFO     | architecture information:
[2025-07-27 21:40:21] 2025-07-28 01:39:49,734 | INFO     | executing command: cat /etc/os-release
[2025-07-27 21:40:21] 2025-07-28 01:39:49,754 | INFO     | cat /etc/os-release:
[2025-07-27 21:40:21] NAME="CentOS Linux"
[2025-07-27 21:40:21] VERSION="7 (Core)"
[2025-07-27 21:40:21] ID="centos"
[2025-07-27 21:40:21] ID_LIKE="rhel fedora"
[2025-07-27 21:40:21] VERSION_ID="7"
[2025-07-27 21:40:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 21:40:21] ANSI_COLOR="0;31"
[2025-07-27 21:40:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 21:40:21] HOME_URL="https://www.centos.org/"
[2025-07-27 21:40:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 21:40:21] 
[2025-07-27 21:40:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 21:40:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 21:40:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 21:40:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 21:40:21] 
[2025-07-27 21:40:21] 2025-07-28 01:39:49,754 | INFO     | ***************************************
[2025-07-27 21:40:21] 2025-07-28 01:39:50,257 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-07-27 21:40:21] 2025-07-28 01:39:50,280 | INFO     | sufficient remaining disk space (124267790336 B)
[2025-07-27 21:40:21] 2025-07-28 01:39:50,280 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 21:40:21] 2025-07-28 01:39:50,280 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 21:40:21] 2025-07-28 01:39:50,280 | INFO     | update_server=False
[2025-07-27 21:40:21] 2025-07-28 01:39:50,280 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 21:40:21] 2025-07-28 01:39:50,281 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:40:21] 2025-07-28 01:39:50,281 | INFO     | aborting loop
[2025-07-27 21:40:21] 2025-07-28 01:39:50,330 | INFO     | all payload control threads have been joined
[2025-07-27 21:40:21] 2025-07-28 01:39:50,901 | INFO     | all job control threads have been joined
[2025-07-27 21:40:21] 2025-07-28 01:39:51,071 | INFO     | all data control threads have been joined
[2025-07-27 21:40:21] 2025-07-28 01:39:51,154 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 21:40:21] 2025-07-28 01:39:51,286 | INFO     | [job] retrieve thread has finished
[2025-07-27 21:40:21] 2025-07-28 01:39:51,288 | INFO     | [job] job monitor thread has finished
[2025-07-27 21:40:21] 2025-07-28 01:39:51,335 | INFO     | [payload] control thread has finished
[2025-07-27 21:40:21] 2025-07-28 01:39:51,475 | INFO     | [payload] validate_post thread has finished
[2025-07-27 21:40:21] 2025-07-28 01:39:51,690 | INFO     | [data] copytool_in thread has finished
[2025-07-27 21:40:21] 2025-07-28 01:39:51,907 | INFO     | [job] control thread has finished
[2025-07-27 21:40:21] 2025-07-28 01:39:51,927 | INFO     | [payload] failed_post thread has finished
[2025-07-27 21:40:21] 2025-07-28 01:39:52,076 | INFO     | [data] control thread has finished
[2025-07-27 21:40:21] 2025-07-28 01:39:52,248 | INFO     | [job] validate thread has finished
[2025-07-27 21:40:21] 2025-07-28 01:39:52,249 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 21:40:21] 2025-07-28 01:39:52,365 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 21:40:21] 2025-07-28 01:39:52,553 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 21:40:21] 2025-07-28 01:39:53,159 | INFO     | [data] copytool_out thread has finished
[2025-07-27 21:40:21] 2025-07-28 01:39:53,204 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:40:21] 2025-07-28 01:39:53,727 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 21:40:21] 2025-07-28 01:39:54,210 | INFO     | [job] queue monitor thread has finished
[2025-07-27 21:40:21] 2025-07-28 01:39:57,732 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 21:40:21] 2025-07-28 01:40:01,027 | INFO     | job.realtimelogging is not enabled
[2025-07-27 21:40:21] 2025-07-28 01:40:02,029 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 21:40:21] 2025-07-28 01:40:03,089 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140052257609536)>', '<ExcThread(monitor, started 140051618977536)>']
[2025-07-27 21:40:21] 2025-07-28 01:40:08,114 | INFO     | all workflow threads have been joined
[2025-07-27 21:40:21] 2025-07-28 01:40:08,115 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 21:40:21] 2025-07-28 01:40:08,115 | INFO     | traces error code: 0
[2025-07-27 21:40:21] 2025-07-28 01:40:08,116 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 21:40:21] 2025-07-28 01:40:20,867 | INFO     | PID=2488085 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 21:40:21] 2025-07-28 01:40:20,867 | INFO     | .. there are 13 such processes running
[2025-07-27 21:40:21] 2025-07-28 01:40:20,868 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 21:40:21] 2025-07-28 01:40:20,868 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 21:40:21] 2025-07-28 01:40:20,868 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 21:40:21] 2025-07-28 01:40:20,868 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 21:40:21] 2025-07-28 01:40:20,868 | INFO     | [monitor] control thread has ended
[2025-07-27 21:40:21] 2025-07-28 01:40:20,958 [wrapper] ==== pilot stdout END ====
[2025-07-27 21:40:21] 2025-07-28 01:40:20,962 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 21:40:21] 2025-07-28 01:40:20,966 [wrapper] pilotpid: 2488085
[2025-07-27 21:40:21] 2025-07-28 01:40:20,969 [wrapper] Pilot exit status: 0
[2025-07-27 21:40:21] 2025-07-28 01:40:20,983 [wrapper] pandaids: 6744842810
[2025-07-27 21:40:21] 2025-07-28 01:40:21,066 [wrapper] cleanup supervisor_pilot 2801948 2488086
[2025-07-27 21:40:21] 2025-07-28 01:40:21,070 [wrapper] Test setup, not cleaning
[2025-07-27 21:40:21] 2025-07-28 01:40:21,073 [wrapper] apfmon messages muted
[2025-07-27 21:40:21] 2025-07-28 01:40:21,077 [wrapper] ==== wrapper stdout END ====
[2025-07-27 21:40:21] 2025-07-28 01:40:21,080 [wrapper] ==== wrapper stderr END ====
[2025-07-27 21:40:21]  *** Error codes and diagnostics ***
[2025-07-27 21:40:21]     "exeErrorCode": 0,
[2025-07-27 21:40:21]     "exeErrorDiag": "",
[2025-07-27 21:40:21]     "pilotErrorCode": 0,
[2025-07-27 21:40:21]     "pilotErrorDiag": "",
[2025-07-27 21:40:21]  *** Listing of results directory ***
[2025-07-27 21:40:21] total 434632
[2025-07-27 21:40:21] -rw-r--r--. 1 boincer umatlas    530466 Jul 24 13:03 pilot3.tar.gz
[2025-07-27 21:40:21] -rwx------. 1 boincer umatlas     36292 Jul 24 13:20 runpilot2-wrapper.sh
[2025-07-27 21:40:21] -rw-r--r--. 1 boincer umatlas      5112 Jul 24 13:20 queuedata.json
[2025-07-27 21:40:21] -rw-r--r--. 1 boincer umatlas       100 Jul 27 20:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 21:40:21] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 20:17 run_atlas
[2025-07-27 21:40:21] -rw-r--r--. 1 boincer umatlas       105 Jul 27 20:17 job.xml
[2025-07-27 21:40:21] -rw-r--r--. 2 boincer umatlas 228269144 Jul 27 20:17 EVNT.45743347._000154.pool.root.1
[2025-07-27 21:40:21] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 20:17 start_atlas.sh
[2025-07-27 21:40:21] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 20:17 shared
[2025-07-27 21:40:21] -rw-r--r--. 2 boincer umatlas    542871 Jul 27 20:17 input.tar.gz
[2025-07-27 21:40:21] -rw-r--r--. 1 boincer umatlas         0 Jul 27 20:17 boinc_lockfile
[2025-07-27 21:40:21] -rw-r--r--. 1 boincer umatlas      2560 Jul 27 20:17 pandaJob.out
[2025-07-27 21:40:21] -rw-------. 1 boincer umatlas    980125 Jul 27 20:18 agis_schedconf.cvmfs.json
[2025-07-27 21:40:21] -rw-------. 1 boincer umatlas   1593052 Jul 27 20:18 agis_ddmendpoints.agis.ALL.json
[2025-07-27 21:40:21] drwx------. 4 boincer umatlas      4096 Jul 27 20:18 pilot3
[2025-07-27 21:40:21] -rw-r--r--. 1 boincer umatlas      6946 Jul 27 21:29 init_data.xml
[2025-07-27 21:40:21] -rw-------. 1 boincer umatlas 211324004 Jul 27 21:39 HITS.45743349._002699.pool.root.1
[2025-07-27 21:40:21] -rw-r--r--. 1 boincer umatlas       529 Jul 27 21:39 boinc_task_state.xml
[2025-07-27 21:40:21] -rw-------. 1 boincer umatlas      1026 Jul 27 21:39 memory_monitor_summary.json
[2025-07-27 21:40:21] -rw-------. 1 boincer umatlas    317124 Jul 27 21:39 log.45743349._002699.job.log.tgz.1
[2025-07-27 21:40:21] -rw-------. 1 boincer umatlas      7758 Jul 27 21:39 heartbeat.json
[2025-07-27 21:40:21] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 21:40 boinc_mmap_file
[2025-07-27 21:40:21] -rw-r--r--. 1 boincer umatlas        27 Jul 27 21:40 wrapper_checkpoint.txt
[2025-07-27 21:40:21] -rw-------. 1 boincer umatlas       823 Jul 27 21:40 pilotlog.txt
[2025-07-27 21:40:21] -rw-------. 1 boincer umatlas        95 Jul 27 21:40 pilot_heartbeat.json
[2025-07-27 21:40:21] -rw-------. 1 boincer umatlas    477901 Jul 27 21:40 log.45743349._002699.job.log.1
[2025-07-27 21:40:21] -rw-------. 1 boincer umatlas       357 Jul 27 21:40 output.list
[2025-07-27 21:40:21] -rw-r--r--. 1 boincer umatlas       620 Jul 27 21:40 runtime_log
[2025-07-27 21:40:21] -rw-------. 1 boincer umatlas    819200 Jul 27 21:40 result.tar.gz
[2025-07-27 21:40:21] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 21:40 runtime_log.err
[2025-07-27 21:40:21] -rw-------. 1 boincer umatlas       650 Jul 27 21:40 EqaLDmnnEz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm2cMLDmk42VJn.diag
[2025-07-27 21:40:21] -rw-r--r--. 1 boincer umatlas     22715 Jul 27 21:40 stderr.txt
[2025-07-27 21:40:21] HITS file was successfully produced:
[2025-07-27 21:40:21] -rw-------. 1 boincer umatlas 211324004 Jul 27 21:39 shared/HITS.pool.root.1
[2025-07-27 21:40:21]  *** Contents of shared directory: ***
[2025-07-27 21:40:21] total 430648
[2025-07-27 21:40:21] -rw-r--r--. 2 boincer umatlas 228269144 Jul 27 20:17 ATLAS.root_0
[2025-07-27 21:40:21] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 20:17 start_atlas.sh
[2025-07-27 21:40:21] -rw-r--r--. 2 boincer umatlas    542871 Jul 27 20:17 input.tar.gz
[2025-07-27 21:40:21] -rw-------. 1 boincer umatlas 211324004 Jul 27 21:39 HITS.pool.root.1
[2025-07-27 21:40:21] -rw-------. 1 boincer umatlas    819200 Jul 27 21:40 result.tar.gz
21:40:22 (2479289): run_atlas exited; CPU time 35747.901153
21:40:22 (2479289): called boinc_finish(0)

</stderr_txt>
]]>

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