Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:03:22 (947036): wrapper (7.7.26015): starting
20:03:22 (947036): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 20:03:22] Arguments: --nthreads 8
[2025-07-27 20:03:22] Threads: 8
[2025-07-27 20:03:22] Checking for CVMFS
[2025-07-27 20:03:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 20:03:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 20:03:22] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 20:03:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 20:03:23] 2.12.6.0 374543 19059 379864 148828 1 216 22496662 40960001 7465 16776704 2 64048355 99.782 75371044 22009 http://cvmfs-s1.hpc.swin.edu.au:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 20:03:23] CVMFS is ok
[2025-07-27 20:03:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 20:03:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 20:03:23] Further information can be found at the LHC@home message board.
[2025-07-27 20:03:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 20:03:23] Checking for apptainer binary...
[2025-07-27 20:03:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 20:03:23] Running /usr/bin/apptainer --version
[2025-07-27 20:03:23] apptainer version 1.4.1-1.el9
[2025-07-27 20:03:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 20:03:23] c7-10-13.aglt2.org
[2025-07-27 20:03:23] apptainer works
[2025-07-27 20:03:23] Set ATHENA_PROC_NUMBER=8
[2025-07-27 20:03:23] Set ATHENA_CORE_NUMBER=8
[2025-07-27 20:03:23] Starting ATLAS job with PandaID=6747599476
[2025-07-27 20:03:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 21:28:32]  *** The last 200 lines of the pilot log: ***
[2025-07-27 21:28:32]  replicas=None
[2025-07-27 21:28:32]  scope=mc23_13p6TeV
[2025-07-27 21:28:32]  status=None
[2025-07-27 21:28:32]  status_code=0
[2025-07-27 21:28:32]  storage_token=
[2025-07-27 21:28:32]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747599476/log.45743349._053860.job.log.tgz.1
[2025-07-27 21:28:32]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1e/66/log.45743349._053860.job.log.tgz.1
[2025-07-27 21:28:32]  workdir=None
[2025-07-27 21:28:32] ]
[2025-07-27 21:28:32] 2025-07-28 01:27:51,259 | INFO     | transferring file log.45743349._053860.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747599476/log.45743349._053860.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 21:28:32] 2025-07-28 01:27:51,259 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747599476/log.45743349._053860.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._053860.job
[2025-07-27 21:28:32] 2025-07-28 01:27:51,281 | INFO     | adding to output.list: log.45743349._053860.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1e/66/log.45743349._053860.job.log.tg
[2025-07-27 21:28:32] 2025-07-28 01:27:51,281 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 21:28:32] 2025-07-28 01:27:51,282 | INFO     | summary of transferred files:
[2025-07-27 21:28:32] 2025-07-28 01:27:51,282 | INFO     |  -- lfn=log.45743349._053860.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 21:28:32] 2025-07-28 01:27:51,282 | INFO     | stage-out finished correctly
[2025-07-27 21:28:32] 2025-07-28 01:27:52,604 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 21:28:32] 2025-07-28 01:27:52,868 | INFO     | monitor loop #376: job 0:6747599476 is in state 'finished'
[2025-07-27 21:28:32] 2025-07-28 01:27:52,869 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:28:32] 2025-07-28 01:27:55,143 | INFO     | job 6747599476 has state=finished
[2025-07-27 21:28:32] 2025-07-28 01:27:55,143 | INFO     | preparing for final server update for job 6747599476 in state='finished'
[2025-07-27 21:28:32] 2025-07-28 01:27:55,144 | INFO     | this job has now completed (state=finished)
[2025-07-27 21:28:32] 2025-07-28 01:27:55,144 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 21:28:32] 2025-07-28 01:27:55,144 | INFO     | log transfer has been attempted: DONE
[2025-07-27 21:28:32] 2025-07-28 01:27:55,145 | INFO     | job 6747599476 has finished - writing final server update
[2025-07-27 21:28:32] 2025-07-28 01:27:55,145 | INFO     | total number of processed events: 400 (read)
[2025-07-27 21:28:32] 2025-07-28 01:27:55,146 | INFO     | executing command: lscpu
[2025-07-27 21:28:32] 2025-07-28 01:27:55,212 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 21:28:32] 2025-07-28 01:27:55,372 | INFO     | monitor loop #377: job 0:6747599476 is in state 'finished'
[2025-07-27 21:28:32] 2025-07-28 01:27:55,372 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:28:32] 2025-07-28 01:27:57,875 | INFO     | monitor loop #378: job 0:6747599476 is in state 'finished'
[2025-07-27 21:28:32] 2025-07-28 01:27:57,875 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:28:32] 2025-07-28 01:28:00,378 | INFO     | monitor loop #379: job 0:6747599476 is in state 'finished'
[2025-07-27 21:28:32] 2025-07-28 01:28:00,379 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:28:32] 2025-07-28 01:28:00,531 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 21:28:32] 2025-07-28 01:28:00,548 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3241.0562500000005
[2025-07-27 21:28:32] 2025-07-28 01:28:00,559 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747599476/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 21:28:32] 2025-07-28 01:28:00,559 | INFO     | extracted standard info from prmon json
[2025-07-27 21:28:32] 2025-07-28 01:28:00,559 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 21:28:32] 2025-07-28 01:28:00,559 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 21:28:32] 2025-07-28 01:28:00,560 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 21:28:32] 2025-07-28 01:28:00,560 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 21:28:32] 2025-07-28 01:28:00,562 | INFO     | fitting pss+swap vs Time
[2025-07-27 21:28:32] 2025-07-28 01:28:00,562 | INFO     | sum of square deviations: 136095575.0
[2025-07-27 21:28:32] 2025-07-28 01:28:00,562 | INFO     | sum of deviations: -7233025803.5
[2025-07-27 21:28:32] 2025-07-28 01:28:00,562 | INFO     | mean x: 1753663637.5
[2025-07-27 21:28:32] 2025-07-28 01:28:00,562 | INFO     | mean y: 2231650.013157895
[2025-07-27 21:28:32] 2025-07-28 01:28:00,562 | INFO     | -- intersect: 93203603852.57866
[2025-07-27 21:28:32] 2025-07-28 01:28:00,562 | INFO     | intersect: 93203603852.57866
[2025-07-27 21:28:32] 2025-07-28 01:28:00,563 | INFO     | chi2: 0.11565834770153251
[2025-07-27 21:28:32] 2025-07-28 01:28:00,563 | INFO     | -- intersect: 93203603852.57866
[2025-07-27 21:28:32] 2025-07-28 01:28:00,563 | INFO     | current memory leak: -53.15 B/s (using 76 data points, chi2=0.12)
[2025-07-27 21:28:32] 2025-07-28 01:28:00,563 | INFO     | could have reported an average CPU frequency of 3231 MHz (6 samples)
[2025-07-27 21:28:32] 2025-07-28 01:28:00,563 | INFO     | ..............................
[2025-07-27 21:28:32] 2025-07-28 01:28:00,563 | INFO     | . Timing measurements:
[2025-07-27 21:28:32] 2025-07-28 01:28:00,563 | INFO     | . get job = 0 s
[2025-07-27 21:28:32] 2025-07-28 01:28:00,563 | INFO     | . initial setup = 2 s
[2025-07-27 21:28:32] 2025-07-28 01:28:00,563 | INFO     | . payload setup = 7 s
[2025-07-27 21:28:32] 2025-07-28 01:28:00,564 | INFO     | . stage-in = 0 s
[2025-07-27 21:28:32] 2025-07-28 01:28:00,564 | INFO     | . payload execution = 5027 s
[2025-07-27 21:28:32] 2025-07-28 01:28:00,564 | INFO     | . stage-out = 0 s
[2025-07-27 21:28:32] 2025-07-28 01:28:00,564 | INFO     | . log creation = 0 s
[2025-07-27 21:28:32] 2025-07-28 01:28:00,564 | INFO     | ..............................
[2025-07-27 21:28:32] 2025-07-28 01:28:00,637 | INFO     | 
[2025-07-27 21:28:32] 2025-07-28 01:28:00,638 | INFO     | job summary report
[2025-07-27 21:28:32] 2025-07-28 01:28:00,638 | INFO     | --------------------------------------------------
[2025-07-27 21:28:32] 2025-07-28 01:28:00,638 | INFO     | PanDA job id: 6747599476
[2025-07-27 21:28:32] 2025-07-28 01:28:00,638 | INFO     | task id: 45743349
[2025-07-27 21:28:32] 2025-07-28 01:28:00,638 | INFO     | errors: (none)
[2025-07-27 21:28:32] 2025-07-28 01:28:00,638 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 21:28:32] 2025-07-28 01:28:00,638 | INFO     | pilot state: finished 
[2025-07-27 21:28:32] 2025-07-28 01:28:00,638 | INFO     | transexitcode: 0
[2025-07-27 21:28:32] 2025-07-28 01:28:00,638 | INFO     | exeerrorcode: 0
[2025-07-27 21:28:32] 2025-07-28 01:28:00,638 | INFO     | exeerrordiag: 
[2025-07-27 21:28:32] 2025-07-28 01:28:00,638 | INFO     | exitcode: 0
[2025-07-27 21:28:32] 2025-07-28 01:28:00,638 | INFO     | exitmsg: OK
[2025-07-27 21:28:32] 2025-07-28 01:28:00,638 | INFO     | cpuconsumptiontime: 37279 s
[2025-07-27 21:28:32] 2025-07-28 01:28:00,638 | INFO     | nevents: 400
[2025-07-27 21:28:32] 2025-07-28 01:28:00,639 | INFO     | neventsw: 0
[2025-07-27 21:28:32] 2025-07-28 01:28:00,639 | INFO     | pid: 957086
[2025-07-27 21:28:32] 2025-07-28 01:28:00,639 | INFO     | pgrp: 957086
[2025-07-27 21:28:32] 2025-07-28 01:28:00,639 | INFO     | corecount: 8
[2025-07-27 21:28:32] 2025-07-28 01:28:00,639 | INFO     | event service: False
[2025-07-27 21:28:32] 2025-07-28 01:28:00,639 | INFO     | sizes: {0: 2396646, 1: 2397502, 6: 2397764, 12: 2397792, 5039: 2424042, 5040: 2433223, 5042: 2433223, 5050: 2433417}
[2025-07-27 21:28:32] 2025-07-28 01:28:00,639 | INFO     | --------------------------------------------------
[2025-07-27 21:28:32] 2025-07-28 01:28:00,639 | INFO     | 
[2025-07-27 21:28:32] 2025-07-28 01:28:00,639 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 21:28:32] 2025-07-28 01:28:00,670 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 21:28:32] 2025-07-28 01:28:00,671 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 21:28:32] 2025-07-28 01:28:00,671 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 21:28:32] 2025-07-28 01:28:00,671 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 21:28:32] 2025-07-28 01:28:00,671 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 21:28:32] 2025-07-28 01:28:00,671 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 21:28:32] 2025-07-28 01:28:00,671 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 21:28:32] 2025-07-28 01:28:00,671 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 21:28:32] 2025-07-28 01:28:00,671 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 21:28:32] 2025-07-28 01:28:00,671 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 21:28:32] 2025-07-28 01:28:00,671 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 21:28:32] 2025-07-28 01:28:00,671 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 21:28:32] 2025-07-28 01:28:00,671 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 21:28:32] 2025-07-28 01:28:00,671 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 21:28:32] 2025-07-28 01:28:00,671 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 21:28:32] 2025-07-28 01:28:00,671 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 21:28:32] 2025-07-28 01:28:00,671 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 21:28:32] 2025-07-28 01:28:00,671 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 21:28:32] 2025-07-28 01:28:00,671 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 21:28:32] 2025-07-28 01:28:00,671 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 21:28:32] 2025-07-28 01:28:00,672 | INFO     | job 6747599476 has completed (purged errors)
[2025-07-27 21:28:32] 2025-07-28 01:28:00,672 | INFO     | overall cleanup function is called
[2025-07-27 21:28:32] 2025-07-28 01:28:01,679 | INFO     | --- collectZombieJob: --- 10, [957086]
[2025-07-27 21:28:32] 2025-07-28 01:28:01,680 | INFO     | zombie collector waiting for pid 957086
[2025-07-27 21:28:32] 2025-07-28 01:28:01,680 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 21:28:32] 2025-07-28 01:28:01,680 | INFO     | collected zombie processes
[2025-07-27 21:28:32] 2025-07-28 01:28:01,680 | INFO     | will attempt to kill all subprocesses of pid=957086
[2025-07-27 21:28:32] 2025-07-28 01:28:01,934 | INFO     | process IDs to be killed: [957086] (in reverse order)
[2025-07-27 21:28:32] 2025-07-28 01:28:02,029 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 21:28:32] 2025-07-28 01:28:02,029 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 21:28:32] 2025-07-28 01:28:02,039 | INFO     | did not find any defunct processes belonging to 957086
[2025-07-27 21:28:32] 2025-07-28 01:28:02,047 | INFO     | did not find any defunct processes belonging to 957086
[2025-07-27 21:28:32] 2025-07-28 01:28:02,047 | INFO     | ready for new job
[2025-07-27 21:28:32] 2025-07-28 01:28:02,047 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 21:28:32] 2025-07-28 01:28:02,048 | INFO     | ***************************************
[2025-07-27 21:28:32] 2025-07-28 01:28:02,049 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 21:28:32] 2025-07-28 01:28:02,049 | INFO     | ***************************************
[2025-07-27 21:28:32] 2025-07-28 01:28:02,050 | INFO     | 
[2025-07-27 21:28:32] 2025-07-28 01:28:02,066 | INFO     | architecture information:
[2025-07-27 21:28:32] 2025-07-28 01:28:02,066 | INFO     | executing command: cat /etc/os-release
[2025-07-27 21:28:32] 2025-07-28 01:28:02,083 | INFO     | cat /etc/os-release:
[2025-07-27 21:28:32] NAME="CentOS Linux"
[2025-07-27 21:28:32] VERSION="7 (Core)"
[2025-07-27 21:28:32] ID="centos"
[2025-07-27 21:28:32] ID_LIKE="rhel fedora"
[2025-07-27 21:28:32] VERSION_ID="7"
[2025-07-27 21:28:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 21:28:32] ANSI_COLOR="0;31"
[2025-07-27 21:28:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 21:28:32] HOME_URL="https://www.centos.org/"
[2025-07-27 21:28:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 21:28:32] 
[2025-07-27 21:28:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 21:28:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 21:28:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 21:28:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 21:28:32] 
[2025-07-27 21:28:32] 2025-07-28 01:28:02,084 | INFO     | ***************************************
[2025-07-27 21:28:32] 2025-07-28 01:28:02,587 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 21:28:32] 2025-07-28 01:28:02,603 | INFO     | sufficient remaining disk space (86137372672 B)
[2025-07-27 21:28:32] 2025-07-28 01:28:02,603 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 21:28:32] 2025-07-28 01:28:02,603 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 21:28:32] 2025-07-28 01:28:02,604 | INFO     | update_server=False
[2025-07-27 21:28:32] 2025-07-28 01:28:02,604 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 21:28:32] 2025-07-28 01:28:02,604 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:28:32] 2025-07-28 01:28:02,604 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 21:28:32] 2025-07-28 01:28:02,708 | INFO     | all payload control threads have been joined
[2025-07-27 21:28:32] 2025-07-28 01:28:02,829 | INFO     | all job control threads have been joined
[2025-07-27 21:28:32] 2025-07-28 01:28:02,881 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 21:28:32] 2025-07-28 01:28:02,882 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 21:28:32] 2025-07-28 01:28:02,882 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:28:32] 2025-07-28 01:28:02,882 | INFO     | will abort loop
[2025-07-27 21:28:32] 2025-07-28 01:28:03,002 | INFO     | all data control threads have been joined
[2025-07-27 21:28:32] 2025-07-28 01:28:03,185 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 21:28:32] 2025-07-28 01:28:03,607 | INFO     | [job] queue monitor thread has finished
[2025-07-27 21:28:32] 2025-07-28 01:28:03,609 | INFO     | [job] retrieve thread has finished
[2025-07-27 21:28:32] 2025-07-28 01:28:03,709 | INFO     | [payload] control thread has finished
[2025-07-27 21:28:32] 2025-07-28 01:28:03,830 | INFO     | [job] control thread has finished
[2025-07-27 21:28:32] 2025-07-28 01:28:03,887 | INFO     | [job] job monitor thread has finished
[2025-07-27 21:28:32] 2025-07-28 01:28:04,008 | INFO     | [data] control thread has finished
[2025-07-27 21:28:32] 2025-07-28 01:28:04,113 | INFO     | [payload] failed_post thread has finished
[2025-07-27 21:28:32] 2025-07-28 01:28:04,289 | INFO     | [job] validate thread has finished
[2025-07-27 21:28:32] 2025-07-28 01:28:04,458 | INFO     | [payload] validate_post thread has finished
[2025-07-27 21:28:32] 2025-07-28 01:28:04,610 | INFO     | [data] copytool_out thread has finished
[2025-07-27 21:28:32] 2025-07-28 01:28:04,646 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 21:28:32] 2025-07-28 01:28:04,767 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 21:28:32] 2025-07-28 01:28:04,777 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 21:28:32] 2025-07-28 01:28:04,860 | INFO     | [data] copytool_in thread has finished
[2025-07-27 21:28:32] 2025-07-28 01:28:07,192 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 21:28:32] 2025-07-28 01:28:13,563 | INFO     | job.realtimelogging is not enabled
[2025-07-27 21:28:32] 2025-07-28 01:28:14,568 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 21:28:32] 2025-07-28 01:28:16,202 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140169337599808)>', '<ExcThread(monitor, started 140168832984832)>']
[2025-07-27 21:28:32] 2025-07-28 01:28:21,227 | INFO     | all workflow threads have been joined
[2025-07-27 21:28:32] 2025-07-28 01:28:21,227 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 21:28:32] 2025-07-28 01:28:21,227 | INFO     | traces error code: 0
[2025-07-27 21:28:32] 2025-07-28 01:28:21,228 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 21:28:32] 2025-07-28 01:28:32,228 | INFO     | PID=950608 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 21:28:32] 2025-07-28 01:28:32,228 | INFO     | .. there are 10 such processes running
[2025-07-27 21:28:32] 2025-07-28 01:28:32,229 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 21:28:32] 2025-07-28 01:28:32,229 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 21:28:32] 2025-07-28 01:28:32,229 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 21:28:32] 2025-07-28 01:28:32,229 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 21:28:32] 2025-07-28 01:28:32,229 | INFO     | [monitor] control thread has ended
[2025-07-27 21:28:32] 2025-07-28 01:28:32,349 [wrapper] ==== pilot stdout END ====
[2025-07-27 21:28:32] 2025-07-28 01:28:32,353 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 21:28:32] 2025-07-28 01:28:32,358 [wrapper] pilotpid: 950608
[2025-07-27 21:28:32] 2025-07-28 01:28:32,362 [wrapper] Pilot exit status: 0
[2025-07-27 21:28:32] 2025-07-28 01:28:32,377 [wrapper] pandaids: 6747599476
[2025-07-27 21:28:32] 2025-07-28 01:28:32,460 [wrapper] cleanup supervisor_pilot 1077879 950609
[2025-07-27 21:28:32] 2025-07-28 01:28:32,464 [wrapper] Test setup, not cleaning
[2025-07-27 21:28:32] 2025-07-28 01:28:32,469 [wrapper] apfmon messages muted
[2025-07-27 21:28:32] 2025-07-28 01:28:32,473 [wrapper] ==== wrapper stdout END ====
[2025-07-27 21:28:32] 2025-07-28 01:28:32,478 [wrapper] ==== wrapper stderr END ====
[2025-07-27 21:28:32]  *** Error codes and diagnostics ***
[2025-07-27 21:28:32]     "exeErrorCode": 0,
[2025-07-27 21:28:32]     "exeErrorDiag": "",
[2025-07-27 21:28:32]     "pilotErrorCode": 0,
[2025-07-27 21:28:32]     "pilotErrorDiag": "",
[2025-07-27 21:28:32]  *** Listing of results directory ***
[2025-07-27 21:28:32] total 352024
[2025-07-27 21:28:32] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 14:08 pilot3.tar.gz
[2025-07-27 21:28:32] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 14:36 queuedata.json
[2025-07-27 21:28:32] -rwx------. 1 boincer umatlas     36292 Jul 27 14:37 runpilot2-wrapper.sh
[2025-07-27 21:28:32] -rw-r--r--. 1 boincer umatlas       100 Jul 27 20:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 21:28:32] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 20:03 run_atlas
[2025-07-27 21:28:32] -rw-r--r--. 1 boincer umatlas       105 Jul 27 20:03 job.xml
[2025-07-27 21:28:32] -rw-r--r--. 2 boincer umatlas 142812943 Jul 27 20:03 EVNT.45743347._002848.pool.root.1
[2025-07-27 21:28:32] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 20:03 start_atlas.sh
[2025-07-27 21:28:32] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 20:03 shared
[2025-07-27 21:28:32] -rw-r--r--. 2 boincer umatlas    542894 Jul 27 20:03 input.tar.gz
[2025-07-27 21:28:32] -rw-r--r--. 1 boincer umatlas         0 Jul 27 20:03 boinc_lockfile
[2025-07-27 21:28:32] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 20:03 pandaJob.out
[2025-07-27 21:28:32] -rw-------. 1 boincer umatlas    980125 Jul 27 20:03 agis_schedconf.cvmfs.json
[2025-07-27 21:28:32] -rw-------. 1 boincer umatlas   1593052 Jul 27 20:03 agis_ddmendpoints.agis.ALL.json
[2025-07-27 21:28:32] drwx------. 4 boincer umatlas      4096 Jul 27 20:03 pilot3
[2025-07-27 21:28:32] -rw-------. 1 boincer umatlas 212186202 Jul 27 21:27 HITS.45743349._053860.pool.root.1
[2025-07-27 21:28:32] -rw-r--r--. 1 boincer umatlas       529 Jul 27 21:27 boinc_task_state.xml
[2025-07-27 21:28:32] -rw-r--r--. 1 boincer umatlas      6897 Jul 27 21:27 init_data.xml
[2025-07-27 21:28:32] -rw-------. 1 boincer umatlas      1045 Jul 27 21:27 memory_monitor_summary.json
[2025-07-27 21:28:32] -rw-------. 1 boincer umatlas    302792 Jul 27 21:27 log.45743349._053860.job.log.tgz.1
[2025-07-27 21:28:32] -rw-------. 1 boincer umatlas      7772 Jul 27 21:28 heartbeat.json
[2025-07-27 21:28:32] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 21:28 boinc_mmap_file
[2025-07-27 21:28:32] -rw-r--r--. 1 boincer umatlas        27 Jul 27 21:28 wrapper_checkpoint.txt
[2025-07-27 21:28:32] -rw-------. 1 boincer umatlas       822 Jul 27 21:28 pilotlog.txt
[2025-07-27 21:28:32] -rw-------. 1 boincer umatlas        95 Jul 27 21:28 pilot_heartbeat.json
[2025-07-27 21:28:32] -rw-------. 1 boincer umatlas    497524 Jul 27 21:28 log.45743349._053860.job.log.1
[2025-07-27 21:28:32] -rw-------. 1 boincer umatlas       357 Jul 27 21:28 output.list
[2025-07-27 21:28:32] -rw-r--r--. 1 boincer umatlas       620 Jul 27 21:28 runtime_log
[2025-07-27 21:28:32] -rw-------. 1 boincer umatlas    819200 Jul 27 21:28 result.tar.gz
[2025-07-27 21:28:32] -rw-------. 1 boincer umatlas       653 Jul 27 21:28 vYSNDmcQL07n9Rq4apOajLDm4fhM0noT9bVof3QYDm1w2KDm1OuvYn.diag
[2025-07-27 21:28:32] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 21:28 runtime_log.err
[2025-07-27 21:28:32] -rw-r--r--. 1 boincer umatlas     21847 Jul 27 21:28 stderr.txt
[2025-07-27 21:28:32] HITS file was successfully produced:
[2025-07-27 21:28:32] -rw-------. 1 boincer umatlas 212186202 Jul 27 21:27 shared/HITS.pool.root.1
[2025-07-27 21:28:32]  *** Contents of shared directory: ***
[2025-07-27 21:28:32] total 348036
[2025-07-27 21:28:32] -rw-r--r--. 2 boincer umatlas 142812943 Jul 27 20:03 ATLAS.root_0
[2025-07-27 21:28:32] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 20:03 start_atlas.sh
[2025-07-27 21:28:32] -rw-r--r--. 2 boincer umatlas    542894 Jul 27 20:03 input.tar.gz
[2025-07-27 21:28:32] -rw-------. 1 boincer umatlas 212186202 Jul 27 21:27 HITS.pool.root.1
[2025-07-27 21:28:32] -rw-------. 1 boincer umatlas    819200 Jul 27 21:28 result.tar.gz
21:28:34 (947036): run_atlas exited; CPU time 37305.655192
21:28:34 (947036): called boinc_finish(0)

</stderr_txt>
]]>

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