Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:04:51 (663954): wrapper (7.7.26015): starting
21:04:51 (663954): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 21:04:51] Arguments: --nthreads 8
[2025-07-27 21:04:51] Threads: 8
[2025-07-27 21:04:51] Checking for CVMFS
[2025-07-27 21:04:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 21:04:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 21:04:52] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 21:04:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 21:04:52] 2.13.0.0 1483043 19137 287680 148829 1 595 35414734 40960001 17610 16776704 0 85993993 99.680 100317620 18988 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 21:04:52] CVMFS is ok
[2025-07-27 21:04:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 21:04:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 21:04:52] Further information can be found at the LHC@home message board.
[2025-07-27 21:04:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 21:04:52] Checking for apptainer binary...
[2025-07-27 21:04:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 21:04:52] Running /usr/bin/apptainer --version
[2025-07-27 21:04:52] apptainer version 1.4.1-1.el9
[2025-07-27 21:04:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 21:04:52] c7-4-30.aglt2.org
[2025-07-27 21:04:52] apptainer works
[2025-07-27 21:04:52] Set ATHENA_PROC_NUMBER=8
[2025-07-27 21:04:52] Set ATHENA_CORE_NUMBER=8
[2025-07-27 21:04:52] Starting ATLAS job with PandaID=6747525129
[2025-07-27 21:04:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 22:31:28]  *** The last 200 lines of the pilot log: ***
[2025-07-27 22:31:28]  mtime=0
[2025-07-27 22:31:28]  protocol_id=None
[2025-07-27 22:31:28]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 22:31:28]  replicas=None
[2025-07-27 22:31:28]  scope=mc23_13p6TeV
[2025-07-27 22:31:28]  status=None
[2025-07-27 22:31:28]  status_code=0
[2025-07-27 22:31:28]  storage_token=
[2025-07-27 22:31:28]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747525129/log.45743349._052042.job.log.tgz.1
[2025-07-27 22:31:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bc/96/log.45743349._052042.job.log.tgz.1
[2025-07-27 22:31:28]  workdir=None
[2025-07-27 22:31:28] ]
[2025-07-27 22:31:28] 2025-07-28 02:30:48,435 | INFO     | transferring file log.45743349._052042.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747525129/log.45743349._052042.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 22:31:28] 2025-07-28 02:30:48,435 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747525129/log.45743349._052042.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._052042.job
[2025-07-27 22:31:28] 2025-07-28 02:30:48,457 | INFO     | adding to output.list: log.45743349._052042.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bc/96/log.45743349._052042.job.log.tg
[2025-07-27 22:31:28] 2025-07-28 02:30:48,457 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 22:31:28] 2025-07-28 02:30:48,458 | INFO     | summary of transferred files:
[2025-07-27 22:31:28] 2025-07-28 02:30:48,458 | INFO     |  -- lfn=log.45743349._052042.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 22:31:28] 2025-07-28 02:30:48,458 | INFO     | stage-out finished correctly
[2025-07-27 22:31:28] 2025-07-28 02:30:48,599 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 22:31:28] 2025-07-28 02:30:49,069 | INFO     | monitor loop #374: job 0:6747525129 is in state 'finished'
[2025-07-27 22:31:28] 2025-07-28 02:30:49,069 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 22:31:28] 2025-07-28 02:30:49,958 | INFO     | job 6747525129 has state=finished
[2025-07-27 22:31:28] 2025-07-28 02:30:49,958 | INFO     | preparing for final server update for job 6747525129 in state='finished'
[2025-07-27 22:31:28] 2025-07-28 02:30:49,959 | INFO     | this job has now completed (state=finished)
[2025-07-27 22:31:28] 2025-07-28 02:30:49,959 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 22:31:28] 2025-07-28 02:30:49,959 | INFO     | log transfer has been attempted: DONE
[2025-07-27 22:31:28] 2025-07-28 02:30:49,959 | INFO     | job 6747525129 has finished - writing final server update
[2025-07-27 22:31:28] 2025-07-28 02:30:49,960 | INFO     | total number of processed events: 400 (read)
[2025-07-27 22:31:28] 2025-07-28 02:30:49,961 | INFO     | executing command: lscpu
[2025-07-27 22:31:28] 2025-07-28 02:30:50,037 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 22:31:28] 2025-07-28 02:30:51,572 | INFO     | monitor loop #375: job 0:6747525129 is in state 'finished'
[2025-07-27 22:31:28] 2025-07-28 02:30:51,573 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 22:31:28] 2025-07-28 02:30:54,077 | INFO     | monitor loop #376: job 0:6747525129 is in state 'finished'
[2025-07-27 22:31:28] 2025-07-28 02:30:54,077 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 22:31:28] 2025-07-28 02:30:55,972 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 22:31:28] 2025-07-28 02:30:55,989 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3021.0288124999993
[2025-07-27 22:31:28] 2025-07-28 02:30:56,001 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747525129/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 22:31:28] 2025-07-28 02:30:56,002 | INFO     | extracted standard info from prmon json
[2025-07-27 22:31:28] 2025-07-28 02:30:56,002 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 22:31:28] 2025-07-28 02:30:56,002 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 22:31:28] 2025-07-28 02:30:56,002 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 22:31:28] 2025-07-28 02:30:56,003 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 22:31:28] 2025-07-28 02:30:56,004 | INFO     | fitting pss+swap vs Time
[2025-07-27 22:31:28] 2025-07-28 02:30:56,004 | INFO     | sum of square deviations: 141539398.0
[2025-07-27 22:31:28] 2025-07-28 02:30:56,004 | INFO     | sum of deviations: -3729109645.0000005
[2025-07-27 22:31:28] 2025-07-28 02:30:56,004 | INFO     | mean x: 1753667362.0
[2025-07-27 22:31:28] 2025-07-28 02:30:56,004 | INFO     | mean y: 2234202.688311688
[2025-07-27 22:31:28] 2025-07-28 02:30:56,004 | INFO     | -- intersect: 46205750440.30794
[2025-07-27 22:31:28] 2025-07-28 02:30:56,004 | INFO     | intersect: 46205750440.30794
[2025-07-27 22:31:28] 2025-07-28 02:30:56,005 | INFO     | chi2: 0.14507835886681464
[2025-07-27 22:31:28] 2025-07-28 02:30:56,005 | INFO     | -- intersect: 46205750440.30794
[2025-07-27 22:31:28] 2025-07-28 02:30:56,005 | INFO     | current memory leak: -26.35 B/s (using 77 data points, chi2=0.15)
[2025-07-27 22:31:28] 2025-07-28 02:30:56,005 | INFO     | could have reported an average CPU frequency of 3004 MHz (6 samples)
[2025-07-27 22:31:28] 2025-07-28 02:30:56,005 | INFO     | ..............................
[2025-07-27 22:31:28] 2025-07-28 02:30:56,005 | INFO     | . Timing measurements:
[2025-07-27 22:31:28] 2025-07-28 02:30:56,005 | INFO     | . get job = 0 s
[2025-07-27 22:31:28] 2025-07-28 02:30:56,005 | INFO     | . initial setup = 2 s
[2025-07-27 22:31:28] 2025-07-28 02:30:56,005 | INFO     | . payload setup = 9 s
[2025-07-27 22:31:28] 2025-07-28 02:30:56,005 | INFO     | . stage-in = 0 s
[2025-07-27 22:31:28] 2025-07-28 02:30:56,005 | INFO     | . payload execution = 5110 s
[2025-07-27 22:31:28] 2025-07-28 02:30:56,006 | INFO     | . stage-out = 0 s
[2025-07-27 22:31:28] 2025-07-28 02:30:56,006 | INFO     | . log creation = 0 s
[2025-07-27 22:31:28] 2025-07-28 02:30:56,006 | INFO     | ..............................
[2025-07-27 22:31:28] 2025-07-28 02:30:56,334 | INFO     | 
[2025-07-27 22:31:28] 2025-07-28 02:30:56,334 | INFO     | job summary report
[2025-07-27 22:31:28] 2025-07-28 02:30:56,334 | INFO     | --------------------------------------------------
[2025-07-27 22:31:28] 2025-07-28 02:30:56,334 | INFO     | PanDA job id: 6747525129
[2025-07-27 22:31:28] 2025-07-28 02:30:56,334 | INFO     | task id: 45743349
[2025-07-27 22:31:28] 2025-07-28 02:30:56,335 | INFO     | errors: (none)
[2025-07-27 22:31:28] 2025-07-28 02:30:56,335 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 22:31:28] 2025-07-28 02:30:56,335 | INFO     | pilot state: finished 
[2025-07-27 22:31:28] 2025-07-28 02:30:56,335 | INFO     | transexitcode: 0
[2025-07-27 22:31:28] 2025-07-28 02:30:56,335 | INFO     | exeerrorcode: 0
[2025-07-27 22:31:28] 2025-07-28 02:30:56,335 | INFO     | exeerrordiag: 
[2025-07-27 22:31:28] 2025-07-28 02:30:56,335 | INFO     | exitcode: 0
[2025-07-27 22:31:28] 2025-07-28 02:30:56,335 | INFO     | exitmsg: OK
[2025-07-27 22:31:28] 2025-07-28 02:30:56,335 | INFO     | cpuconsumptiontime: 38349 s
[2025-07-27 22:31:28] 2025-07-28 02:30:56,335 | INFO     | nevents: 400
[2025-07-27 22:31:28] 2025-07-28 02:30:56,335 | INFO     | neventsw: 0
[2025-07-27 22:31:28] 2025-07-28 02:30:56,335 | INFO     | pid: 676801
[2025-07-27 22:31:28] 2025-07-28 02:30:56,335 | INFO     | pgrp: 676801
[2025-07-27 22:31:28] 2025-07-28 02:30:56,335 | INFO     | corecount: 8
[2025-07-27 22:31:28] 2025-07-28 02:30:56,335 | INFO     | event service: False
[2025-07-27 22:31:28] 2025-07-28 02:30:56,336 | INFO     | sizes: {0: 2397424, 6: 2397686, 11: 2397714, 5123: 2423909, 5124: 2432907, 5125: 2432963, 5132: 2433285}
[2025-07-27 22:31:28] 2025-07-28 02:30:56,336 | INFO     | --------------------------------------------------
[2025-07-27 22:31:28] 2025-07-28 02:30:56,336 | INFO     | 
[2025-07-27 22:31:28] 2025-07-28 02:30:56,336 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 22:31:28] 2025-07-28 02:30:56,359 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 22:31:28] 2025-07-28 02:30:56,359 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 22:31:28] 2025-07-28 02:30:56,359 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 22:31:28] 2025-07-28 02:30:56,360 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 22:31:28] 2025-07-28 02:30:56,360 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 22:31:28] 2025-07-28 02:30:56,360 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 22:31:28] 2025-07-28 02:30:56,360 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 22:31:28] 2025-07-28 02:30:56,360 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 22:31:28] 2025-07-28 02:30:56,360 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 22:31:28] 2025-07-28 02:30:56,360 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 22:31:28] 2025-07-28 02:30:56,360 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 22:31:28] 2025-07-28 02:30:56,360 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 22:31:28] 2025-07-28 02:30:56,360 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 22:31:28] 2025-07-28 02:30:56,360 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 22:31:28] 2025-07-28 02:30:56,360 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 22:31:28] 2025-07-28 02:30:56,360 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 22:31:28] 2025-07-28 02:30:56,361 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 22:31:28] 2025-07-28 02:30:56,361 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 22:31:28] 2025-07-28 02:30:56,361 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 22:31:28] 2025-07-28 02:30:56,361 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 22:31:28] 2025-07-28 02:30:56,361 | INFO     | job 6747525129 has completed (purged errors)
[2025-07-27 22:31:28] 2025-07-28 02:30:56,361 | INFO     | overall cleanup function is called
[2025-07-27 22:31:28] 2025-07-28 02:30:57,369 | INFO     | --- collectZombieJob: --- 10, [676801]
[2025-07-27 22:31:28] 2025-07-28 02:30:57,381 | INFO     | zombie collector waiting for pid 676801
[2025-07-27 22:31:28] 2025-07-28 02:30:57,381 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 22:31:28] 2025-07-28 02:30:57,382 | INFO     | collected zombie processes
[2025-07-27 22:31:28] 2025-07-28 02:30:57,382 | INFO     | will attempt to kill all subprocesses of pid=676801
[2025-07-27 22:31:28] 2025-07-28 02:30:57,858 | INFO     | process IDs to be killed: [676801] (in reverse order)
[2025-07-27 22:31:28] 2025-07-28 02:30:58,003 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 22:31:28] 2025-07-28 02:30:58,004 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 22:31:28] 2025-07-28 02:30:58,025 | INFO     | did not find any defunct processes belonging to 676801
[2025-07-27 22:31:28] 2025-07-28 02:30:58,045 | INFO     | did not find any defunct processes belonging to 676801
[2025-07-27 22:31:28] 2025-07-28 02:30:58,045 | INFO     | ready for new job
[2025-07-27 22:31:28] 2025-07-28 02:30:58,045 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 22:31:28] 2025-07-28 02:30:58,047 | INFO     | ***************************************
[2025-07-27 22:31:28] 2025-07-28 02:30:58,047 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 22:31:28] 2025-07-28 02:30:58,047 | INFO     | ***************************************
[2025-07-27 22:31:28] 2025-07-28 02:30:58,049 | INFO     | 
[2025-07-27 22:31:28] 2025-07-28 02:30:58,067 | INFO     | architecture information:
[2025-07-27 22:31:28] 2025-07-28 02:30:58,067 | INFO     | executing command: cat /etc/os-release
[2025-07-27 22:31:28] 2025-07-28 02:30:58,084 | INFO     | cat /etc/os-release:
[2025-07-27 22:31:28] NAME="CentOS Linux"
[2025-07-27 22:31:28] VERSION="7 (Core)"
[2025-07-27 22:31:28] ID="centos"
[2025-07-27 22:31:28] ID_LIKE="rhel fedora"
[2025-07-27 22:31:28] VERSION_ID="7"
[2025-07-27 22:31:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 22:31:28] ANSI_COLOR="0;31"
[2025-07-27 22:31:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 22:31:28] HOME_URL="https://www.centos.org/"
[2025-07-27 22:31:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 22:31:28] 
[2025-07-27 22:31:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 22:31:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 22:31:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 22:31:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 22:31:28] 
[2025-07-27 22:31:28] 2025-07-28 02:30:58,085 | INFO     | ***************************************
[2025-07-27 22:31:28] 2025-07-28 02:30:58,588 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 22:31:28] 2025-07-28 02:30:58,609 | INFO     | sufficient remaining disk space (128742064128 B)
[2025-07-27 22:31:28] 2025-07-28 02:30:58,609 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 22:31:28] 2025-07-28 02:30:58,610 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 22:31:28] 2025-07-28 02:30:58,610 | INFO     | update_server=False
[2025-07-27 22:31:28] 2025-07-28 02:30:58,610 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 22:31:28] 2025-07-28 02:30:58,618 | INFO     | all data control threads have been joined
[2025-07-27 22:31:28] 2025-07-28 02:30:58,937 | INFO     | all payload control threads have been joined
[2025-07-27 22:31:28] 2025-07-28 02:30:59,053 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 22:31:28] 2025-07-28 02:30:59,087 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 22:31:28] 2025-07-28 02:30:59,087 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 22:31:28] 2025-07-28 02:30:59,088 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 22:31:28] 2025-07-28 02:30:59,088 | INFO     | will abort loop
[2025-07-27 22:31:28] 2025-07-28 02:30:59,182 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 22:31:28] 2025-07-28 02:30:59,615 | INFO     | [job] retrieve thread has finished
[2025-07-27 22:31:28] 2025-07-28 02:30:59,624 | INFO     | [data] control thread has finished
[2025-07-27 22:31:28] 2025-07-28 02:30:59,889 | INFO     | all job control threads have been joined
[2025-07-27 22:31:28] 2025-07-28 02:30:59,942 | INFO     | [payload] control thread has finished
[2025-07-27 22:31:28] 2025-07-28 02:31:00,016 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 22:31:28] 2025-07-28 02:31:00,093 | INFO     | [job] job monitor thread has finished
[2025-07-27 22:31:28] 2025-07-28 02:31:00,388 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 22:31:28] 2025-07-28 02:31:00,580 | INFO     | [job] validate thread has finished
[2025-07-27 22:31:28] 2025-07-28 02:31:00,625 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 22:31:28] 2025-07-28 02:31:00,711 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 22:31:28] 2025-07-28 02:31:00,747 | INFO     | [data] copytool_in thread has finished
[2025-07-27 22:31:28] 2025-07-28 02:31:00,892 | INFO     | [payload] validate_post thread has finished
[2025-07-27 22:31:28] 2025-07-28 02:31:00,894 | INFO     | [job] control thread has finished
[2025-07-27 22:31:28] 2025-07-28 02:31:00,951 | INFO     | [payload] failed_post thread has finished
[2025-07-27 22:31:28] 2025-07-28 02:31:01,059 | INFO     | [data] copytool_out thread has finished
[2025-07-27 22:31:28] 2025-07-28 02:31:01,070 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 22:31:28] 2025-07-28 02:31:02,075 | INFO     | [job] queue monitor thread has finished
[2025-07-27 22:31:28] 2025-07-28 02:31:03,188 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 22:31:28] 2025-07-28 02:31:04,984 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139658378749760)>', '<ExcThread(monitor, started 139657891272448)>']
[2025-07-27 22:31:28] 2025-07-28 02:31:10,009 | INFO     | all workflow threads have been joined
[2025-07-27 22:31:28] 2025-07-28 02:31:10,010 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 22:31:28] 2025-07-28 02:31:10,010 | INFO     | traces error code: 0
[2025-07-27 22:31:28] 2025-07-28 02:31:10,010 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 22:31:28] 2025-07-28 02:31:28,215 | INFO     | PID=669192 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 22:31:28] 2025-07-28 02:31:28,216 | INFO     | .. there are 21 such processes running
[2025-07-27 22:31:28] 2025-07-28 02:31:28,216 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 22:31:28] 2025-07-28 02:31:28,217 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 22:31:28] 2025-07-28 02:31:28,217 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 22:31:28] 2025-07-28 02:31:28,217 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 22:31:28] 2025-07-28 02:31:28,217 | INFO     | [monitor] control thread has ended
[2025-07-27 22:31:28] 2025-07-28 02:31:28,370 [wrapper] ==== pilot stdout END ====
[2025-07-27 22:31:28] 2025-07-28 02:31:28,372 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 22:31:28] 2025-07-28 02:31:28,376 [wrapper] pilotpid: 669192
[2025-07-27 22:31:28] 2025-07-28 02:31:28,379 [wrapper] Pilot exit status: 0
[2025-07-27 22:31:28] 2025-07-28 02:31:28,396 [wrapper] pandaids: 6747525129
[2025-07-27 22:31:28] 2025-07-28 02:31:28,491 [wrapper] cleanup supervisor_pilot  966780 669193
[2025-07-27 22:31:28] 2025-07-28 02:31:28,496 [wrapper] Test setup, not cleaning
[2025-07-27 22:31:28] 2025-07-28 02:31:28,500 [wrapper] apfmon messages muted
[2025-07-27 22:31:28] 2025-07-28 02:31:28,506 [wrapper] ==== wrapper stdout END ====
[2025-07-27 22:31:28] 2025-07-28 02:31:28,512 [wrapper] ==== wrapper stderr END ====
[2025-07-27 22:31:28]  *** Error codes and diagnostics ***
[2025-07-27 22:31:28]     "exeErrorCode": 0,
[2025-07-27 22:31:28]     "exeErrorDiag": "",
[2025-07-27 22:31:28]     "pilotErrorCode": 0,
[2025-07-27 22:31:28]     "pilotErrorDiag": "",
[2025-07-27 22:31:28]  *** Listing of results directory ***
[2025-07-27 22:31:28] total 436848
[2025-07-27 22:31:28] -rwx------. 1 boincer umatlas     36292 Jul 27 12:02 runpilot2-wrapper.sh
[2025-07-27 22:31:28] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 12:02 queuedata.json
[2025-07-27 22:31:28] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 12:02 pilot3.tar.gz
[2025-07-27 22:31:28] -rw-r--r--. 1 boincer umatlas       100 Jul 27 21:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 22:31:28] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 21:04 run_atlas
[2025-07-27 22:31:28] -rw-r--r--. 1 boincer umatlas       105 Jul 27 21:04 job.xml
[2025-07-27 22:31:28] -rw-r--r--. 2 boincer umatlas 228883159 Jul 27 21:04 EVNT.45743347._002839.pool.root.1
[2025-07-27 22:31:28] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 21:04 shared
[2025-07-27 22:31:28] -rw-r--r--. 2 boincer umatlas    542886 Jul 27 21:04 input.tar.gz
[2025-07-27 22:31:28] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 21:04 start_atlas.sh
[2025-07-27 22:31:28] -rw-r--r--. 1 boincer umatlas         0 Jul 27 21:04 boinc_lockfile
[2025-07-27 22:31:28] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 21:04 pandaJob.out
[2025-07-27 22:31:28] -rw-------. 1 boincer umatlas    980125 Jul 27 21:05 agis_schedconf.cvmfs.json
[2025-07-27 22:31:28] -rw-------. 1 boincer umatlas   1593052 Jul 27 21:05 agis_ddmendpoints.agis.ALL.json
[2025-07-27 22:31:28] drwx------. 4 boincer umatlas      4096 Jul 27 21:05 pilot3
[2025-07-27 22:31:28] -rw-r--r--. 1 boincer umatlas      6935 Jul 27 22:22 init_data.xml
[2025-07-27 22:31:28] -rw-------. 1 boincer umatlas 212958040 Jul 27 22:30 HITS.45743349._052042.pool.root.1
[2025-07-27 22:31:28] -rw-r--r--. 1 boincer umatlas       529 Jul 27 22:30 boinc_task_state.xml
[2025-07-27 22:31:28] -rw-------. 1 boincer umatlas        95 Jul 27 22:30 pilot_heartbeat.json
[2025-07-27 22:31:28] -rw-------. 1 boincer umatlas      1028 Jul 27 22:30 memory_monitor_summary.json
[2025-07-27 22:31:28] -rw-------. 1 boincer umatlas    311007 Jul 27 22:30 log.45743349._052042.job.log.tgz.1
[2025-07-27 22:31:28] -rw-------. 1 boincer umatlas      7767 Jul 27 22:30 heartbeat.json
[2025-07-27 22:31:28] -rw-r--r--. 1 boincer umatlas        27 Jul 27 22:31 wrapper_checkpoint.txt
[2025-07-27 22:31:28] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 22:31 boinc_mmap_file
[2025-07-27 22:31:28] -rw-------. 1 boincer umatlas       822 Jul 27 22:31 pilotlog.txt
[2025-07-27 22:31:28] -rw-------. 1 boincer umatlas    496879 Jul 27 22:31 log.45743349._052042.job.log.1
[2025-07-27 22:31:28] -rw-------. 1 boincer umatlas       357 Jul 27 22:31 output.list
[2025-07-27 22:31:28] -rw-r--r--. 1 boincer umatlas       620 Jul 27 22:31 runtime_log
[2025-07-27 22:31:28] -rw-------. 1 boincer umatlas    829440 Jul 27 22:31 result.tar.gz
[2025-07-27 22:31:28] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 22:31 runtime_log.err
[2025-07-27 22:31:28] -rw-------. 1 boincer umatlas       652 Jul 27 22:31 rnfMDmX0I07n9Rq4apOajLDm4fhM0noT9bVof3QYDm3l2KDmlcYmBo.diag
[2025-07-27 22:31:28] -rw-r--r--. 1 boincer umatlas     21723 Jul 27 22:31 stderr.txt
[2025-07-27 22:31:28] HITS file was successfully produced:
[2025-07-27 22:31:28] -rw-------. 1 boincer umatlas 212958040 Jul 27 22:30 shared/HITS.pool.root.1
[2025-07-27 22:31:28]  *** Contents of shared directory: ***
[2025-07-27 22:31:28] total 432852
[2025-07-27 22:31:28] -rw-r--r--. 2 boincer umatlas 228883159 Jul 27 21:04 ATLAS.root_0
[2025-07-27 22:31:28] -rw-r--r--. 2 boincer umatlas    542886 Jul 27 21:04 input.tar.gz
[2025-07-27 22:31:28] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 21:04 start_atlas.sh
[2025-07-27 22:31:28] -rw-------. 1 boincer umatlas 212958040 Jul 27 22:30 HITS.pool.root.1
[2025-07-27 22:31:28] -rw-------. 1 boincer umatlas    829440 Jul 27 22:31 result.tar.gz
22:31:29 (663954): run_atlas exited; CPU time 38540.846743
22:31:29 (663954): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN