Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:59:27 (249927): wrapper (7.7.26015): starting
19:59:27 (249927): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 19:59:27] Arguments: --nthreads 8
[2025-07-27 19:59:27] Threads: 8
[2025-07-27 19:59:27] Checking for CVMFS
[2025-07-27 19:59:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 19:59:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 19:59:27] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 19:59:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 19:59:27] 2.13.1.0 679170 14831 202388 148828 3 532 40701052 40960001 15746 16776704 0 39313314 99.922 19195820 46910 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 19:59:27] CVMFS is ok
[2025-07-27 19:59:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 19:59:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 19:59:27] Further information can be found at the LHC@home message board.
[2025-07-27 19:59:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 19:59:27] Checking for apptainer binary...
[2025-07-27 19:59:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 19:59:27] Running /usr/bin/apptainer --version
[2025-07-27 19:59:27] apptainer version 1.4.1-1.el9
[2025-07-27 19:59:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 19:59:27] c-212-10.aglt2.org
[2025-07-27 19:59:27] apptainer works
[2025-07-27 19:59:27] Set ATHENA_PROC_NUMBER=8
[2025-07-27 19:59:27] Set ATHENA_CORE_NUMBER=8
[2025-07-27 19:59:27] Starting ATLAS job with PandaID=6747499881
[2025-07-27 19:59:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 21:29:31]  *** The last 200 lines of the pilot log: ***
[2025-07-27 21:29:31]  protocol_id=None
[2025-07-27 21:29:31]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 21:29:31]  replicas=None
[2025-07-27 21:29:31]  scope=mc23_13p6TeV
[2025-07-27 21:29:31]  status=None
[2025-07-27 21:29:31]  status_code=0
[2025-07-27 21:29:31]  storage_token=
[2025-07-27 21:29:31]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747499881/log.45743349._051266.job.log.tgz.1
[2025-07-27 21:29:31]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bc/a1/log.45743349._051266.job.log.tgz.1
[2025-07-27 21:29:31]  workdir=None
[2025-07-27 21:29:31] ]
[2025-07-27 21:29:31] 2025-07-28 01:28:49,563 | INFO     | transferring file log.45743349._051266.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747499881/log.45743349._051266.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 21:29:31] 2025-07-28 01:28:49,564 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747499881/log.45743349._051266.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._051266.job
[2025-07-27 21:29:31] 2025-07-28 01:28:49,582 | INFO     | adding to output.list: log.45743349._051266.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bc/a1/log.45743349._051266.job.log.tg
[2025-07-27 21:29:31] 2025-07-28 01:28:49,583 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 21:29:31] 2025-07-28 01:28:49,584 | INFO     | summary of transferred files:
[2025-07-27 21:29:31] 2025-07-28 01:28:49,584 | INFO     |  -- lfn=log.45743349._051266.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 21:29:31] 2025-07-28 01:28:49,584 | INFO     | stage-out finished correctly
[2025-07-27 21:29:31] 2025-07-28 01:28:50,612 | INFO     | monitor loop #391: job 0:6747499881 is in state 'finished'
[2025-07-27 21:29:31] 2025-07-28 01:28:50,613 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:29:31] 2025-07-28 01:28:52,659 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 21:29:31] 2025-07-28 01:28:53,116 | INFO     | monitor loop #392: job 0:6747499881 is in state 'finished'
[2025-07-27 21:29:31] 2025-07-28 01:28:53,116 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:29:31] 2025-07-28 01:28:55,058 | INFO     | job 6747499881 has state=finished
[2025-07-27 21:29:31] 2025-07-28 01:28:55,059 | INFO     | preparing for final server update for job 6747499881 in state='finished'
[2025-07-27 21:29:31] 2025-07-28 01:28:55,114 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-27 21:29:31] 2025-07-28 01:28:55,114 | INFO     | this job has now completed (state=finished)
[2025-07-27 21:29:31] 2025-07-28 01:28:55,114 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 21:29:31] 2025-07-28 01:28:55,114 | INFO     | log transfer has been attempted: DONE
[2025-07-27 21:29:31] 2025-07-28 01:28:55,114 | INFO     | job 6747499881 has finished - writing final server update
[2025-07-27 21:29:31] 2025-07-28 01:28:55,115 | INFO     | total number of processed events: 400 (read)
[2025-07-27 21:29:31] 2025-07-28 01:28:55,115 | INFO     | executing command: lscpu
[2025-07-27 21:29:31] 2025-07-28 01:28:55,180 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 21:29:31] 2025-07-28 01:28:55,624 | INFO     | monitor loop #393: job 0:6747499881 is in state 'finished'
[2025-07-27 21:29:31] 2025-07-28 01:28:55,624 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:29:31] 2025-07-28 01:28:58,127 | INFO     | monitor loop #394: job 0:6747499881 is in state 'finished'
[2025-07-27 21:29:31] 2025-07-28 01:28:58,127 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:29:31] 2025-07-28 01:28:59,439 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 21:29:31] 2025-07-28 01:28:59,445 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2974.1409895833335
[2025-07-27 21:29:31] 2025-07-28 01:28:59,460 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747499881/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 21:29:31] 2025-07-28 01:28:59,461 | INFO     | extracted standard info from prmon json
[2025-07-27 21:29:31] 2025-07-28 01:28:59,461 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 21:29:31] 2025-07-28 01:28:59,461 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 21:29:31] 2025-07-28 01:28:59,461 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 21:29:31] 2025-07-28 01:28:59,461 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 21:29:31] 2025-07-28 01:28:59,463 | INFO     | fitting pss+swap vs Time
[2025-07-27 21:29:31] 2025-07-28 01:28:59,463 | INFO     | sum of square deviations: 164765880.0
[2025-07-27 21:29:31] 2025-07-28 01:28:59,464 | INFO     | sum of deviations: -4147604537.000002
[2025-07-27 21:29:31] 2025-07-28 01:28:59,464 | INFO     | mean x: 1753663553.0
[2025-07-27 21:29:31] 2025-07-28 01:28:59,464 | INFO     | mean y: 2569826.6790123456
[2025-07-27 21:29:31] 2025-07-28 01:28:59,464 | INFO     | -- intersect: 44147042631.329735
[2025-07-27 21:29:31] 2025-07-28 01:28:59,464 | INFO     | intersect: 44147042631.329735
[2025-07-27 21:29:31] 2025-07-28 01:28:59,464 | INFO     | chi2: 0.032850208231249164
[2025-07-27 21:29:31] 2025-07-28 01:28:59,464 | INFO     | -- intersect: 44147042631.329735
[2025-07-27 21:29:31] 2025-07-28 01:28:59,464 | INFO     | current memory leak: -25.17 B/s (using 81 data points, chi2=0.03)
[2025-07-27 21:29:31] 2025-07-28 01:28:59,465 | INFO     | could have reported an average CPU frequency of 2978 MHz (6 samples)
[2025-07-27 21:29:31] 2025-07-28 01:28:59,465 | INFO     | ..............................
[2025-07-27 21:29:31] 2025-07-28 01:28:59,465 | INFO     | . Timing measurements:
[2025-07-27 21:29:31] 2025-07-28 01:28:59,465 | INFO     | . get job = 0 s
[2025-07-27 21:29:31] 2025-07-28 01:28:59,465 | INFO     | . initial setup = 2 s
[2025-07-27 21:29:31] 2025-07-28 01:28:59,465 | INFO     | . payload setup = 7 s
[2025-07-27 21:29:31] 2025-07-28 01:28:59,465 | INFO     | . stage-in = 0 s
[2025-07-27 21:29:31] 2025-07-28 01:28:59,465 | INFO     | . payload execution = 5322 s
[2025-07-27 21:29:31] 2025-07-28 01:28:59,465 | INFO     | . stage-out = 0 s
[2025-07-27 21:29:31] 2025-07-28 01:28:59,465 | INFO     | . log creation = 0 s
[2025-07-27 21:29:31] 2025-07-28 01:28:59,465 | INFO     | ..............................
[2025-07-27 21:29:31] 2025-07-28 01:28:59,550 | INFO     | 
[2025-07-27 21:29:31] 2025-07-28 01:28:59,550 | INFO     | job summary report
[2025-07-27 21:29:31] 2025-07-28 01:28:59,551 | INFO     | --------------------------------------------------
[2025-07-27 21:29:31] 2025-07-28 01:28:59,551 | INFO     | PanDA job id: 6747499881
[2025-07-27 21:29:31] 2025-07-28 01:28:59,551 | INFO     | task id: 45743349
[2025-07-27 21:29:31] 2025-07-28 01:28:59,551 | INFO     | errors: (none)
[2025-07-27 21:29:31] 2025-07-28 01:28:59,551 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 21:29:31] 2025-07-28 01:28:59,551 | INFO     | pilot state: finished 
[2025-07-27 21:29:31] 2025-07-28 01:28:59,551 | INFO     | transexitcode: 0
[2025-07-27 21:29:31] 2025-07-28 01:28:59,551 | INFO     | exeerrorcode: 0
[2025-07-27 21:29:31] 2025-07-28 01:28:59,551 | INFO     | exeerrordiag: 
[2025-07-27 21:29:31] 2025-07-28 01:28:59,551 | INFO     | exitcode: 0
[2025-07-27 21:29:31] 2025-07-28 01:28:59,551 | INFO     | exitmsg: OK
[2025-07-27 21:29:31] 2025-07-28 01:28:59,551 | INFO     | cpuconsumptiontime: 38595 s
[2025-07-27 21:29:31] 2025-07-28 01:28:59,551 | INFO     | nevents: 400
[2025-07-27 21:29:31] 2025-07-28 01:28:59,551 | INFO     | neventsw: 0
[2025-07-27 21:29:31] 2025-07-28 01:28:59,551 | INFO     | pid: 261605
[2025-07-27 21:29:31] 2025-07-28 01:28:59,551 | INFO     | pgrp: 261605
[2025-07-27 21:29:31] 2025-07-28 01:28:59,552 | INFO     | corecount: 8
[2025-07-27 21:29:31] 2025-07-28 01:28:59,552 | INFO     | event service: False
[2025-07-27 21:29:31] 2025-07-28 01:28:59,552 | INFO     | sizes: {0: 2397475, 5: 2397737, 11: 2397793, 5332: 2424218, 5333: 2424217, 5334: 2433271, 5337: 2433455, 5343: 2433649}
[2025-07-27 21:29:31] 2025-07-28 01:28:59,552 | INFO     | --------------------------------------------------
[2025-07-27 21:29:31] 2025-07-28 01:28:59,552 | INFO     | 
[2025-07-27 21:29:31] 2025-07-28 01:28:59,552 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 21:29:31] 2025-07-28 01:28:59,569 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 21:29:31] 2025-07-28 01:28:59,570 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 21:29:31] 2025-07-28 01:28:59,570 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 21:29:31] 2025-07-28 01:28:59,570 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 21:29:31] 2025-07-28 01:28:59,570 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 21:29:31] 2025-07-28 01:28:59,570 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 21:29:31] 2025-07-28 01:28:59,570 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 21:29:31] 2025-07-28 01:28:59,570 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 21:29:31] 2025-07-28 01:28:59,570 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 21:29:31] 2025-07-28 01:28:59,570 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 21:29:31] 2025-07-28 01:28:59,570 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 21:29:31] 2025-07-28 01:28:59,570 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 21:29:31] 2025-07-28 01:28:59,571 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 21:29:31] 2025-07-28 01:28:59,571 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 21:29:31] 2025-07-28 01:28:59,571 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 21:29:31] 2025-07-28 01:28:59,571 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 21:29:31] 2025-07-28 01:28:59,571 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 21:29:31] 2025-07-28 01:28:59,571 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 21:29:31] 2025-07-28 01:28:59,571 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 21:29:31] 2025-07-28 01:28:59,571 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 21:29:31] 2025-07-28 01:28:59,571 | INFO     | job 6747499881 has completed (purged errors)
[2025-07-27 21:29:31] 2025-07-28 01:28:59,572 | INFO     | overall cleanup function is called
[2025-07-27 21:29:31] 2025-07-28 01:29:00,580 | INFO     | --- collectZombieJob: --- 10, [261605]
[2025-07-27 21:29:31] 2025-07-28 01:29:00,580 | INFO     | zombie collector waiting for pid 261605
[2025-07-27 21:29:31] 2025-07-28 01:29:00,580 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 21:29:31] 2025-07-28 01:29:00,580 | INFO     | collected zombie processes
[2025-07-27 21:29:31] 2025-07-28 01:29:00,581 | INFO     | will attempt to kill all subprocesses of pid=261605
[2025-07-27 21:29:31] 2025-07-28 01:29:00,872 | INFO     | process IDs to be killed: [261605] (in reverse order)
[2025-07-27 21:29:31] 2025-07-28 01:29:00,995 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 21:29:31] 2025-07-28 01:29:00,995 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 21:29:31] 2025-07-28 01:29:01,008 | INFO     | did not find any defunct processes belonging to 261605
[2025-07-27 21:29:31] 2025-07-28 01:29:01,021 | INFO     | did not find any defunct processes belonging to 261605
[2025-07-27 21:29:31] 2025-07-28 01:29:01,021 | INFO     | ready for new job
[2025-07-27 21:29:31] 2025-07-28 01:29:01,022 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 21:29:31] 2025-07-28 01:29:01,023 | INFO     | ***************************************
[2025-07-27 21:29:31] 2025-07-28 01:29:01,023 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 21:29:31] 2025-07-28 01:29:01,023 | INFO     | ***************************************
[2025-07-27 21:29:31] 2025-07-28 01:29:01,024 | INFO     | 
[2025-07-27 21:29:31] 2025-07-28 01:29:01,029 | INFO     | architecture information:
[2025-07-27 21:29:31] 2025-07-28 01:29:01,029 | INFO     | executing command: cat /etc/os-release
[2025-07-27 21:29:31] 2025-07-28 01:29:01,046 | INFO     | cat /etc/os-release:
[2025-07-27 21:29:31] NAME="CentOS Linux"
[2025-07-27 21:29:31] VERSION="7 (Core)"
[2025-07-27 21:29:31] ID="centos"
[2025-07-27 21:29:31] ID_LIKE="rhel fedora"
[2025-07-27 21:29:31] VERSION_ID="7"
[2025-07-27 21:29:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 21:29:31] ANSI_COLOR="0;31"
[2025-07-27 21:29:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 21:29:31] HOME_URL="https://www.centos.org/"
[2025-07-27 21:29:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 21:29:31] 
[2025-07-27 21:29:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 21:29:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 21:29:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 21:29:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 21:29:31] 
[2025-07-27 21:29:31] 2025-07-28 01:29:01,046 | INFO     | ***************************************
[2025-07-27 21:29:31] 2025-07-28 01:29:01,550 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 21:29:31] 2025-07-28 01:29:01,564 | INFO     | sufficient remaining disk space (128970653696 B)
[2025-07-27 21:29:31] 2025-07-28 01:29:01,564 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 21:29:31] 2025-07-28 01:29:01,564 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 21:29:31] 2025-07-28 01:29:01,564 | INFO     | update_server=False
[2025-07-27 21:29:31] 2025-07-28 01:29:01,564 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 21:29:31] 2025-07-28 01:29:01,635 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:29:31] 2025-07-28 01:29:01,635 | INFO     | aborting loop
[2025-07-27 21:29:31] 2025-07-28 01:29:01,714 | INFO     | all data control threads have been joined
[2025-07-27 21:29:31] 2025-07-28 01:29:02,565 | INFO     | [job] retrieve thread has finished
[2025-07-27 21:29:31] 2025-07-28 01:29:02,591 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 21:29:31] 2025-07-28 01:29:02,640 | INFO     | [job] job monitor thread has finished
[2025-07-27 21:29:31] 2025-07-28 01:29:02,693 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 21:29:31] 2025-07-28 01:29:02,718 | INFO     | [data] control thread has finished
[2025-07-27 21:29:31] 2025-07-28 01:29:02,746 | INFO     | all payload control threads have been joined
[2025-07-27 21:29:31] 2025-07-28 01:29:02,790 | INFO     | [payload] validate_post thread has finished
[2025-07-27 21:29:31] 2025-07-28 01:29:03,000 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 21:29:31] 2025-07-28 01:29:03,093 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 21:29:31] 2025-07-28 01:29:03,213 | INFO     | all job control threads have been joined
[2025-07-27 21:29:31] 2025-07-28 01:29:03,249 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 21:29:31] 2025-07-28 01:29:03,313 | INFO     | [job] validate thread has finished
[2025-07-27 21:29:31] 2025-07-28 01:29:03,536 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 21:29:31] 2025-07-28 01:29:03,692 | INFO     | [data] copytool_in thread has finished
[2025-07-27 21:29:31] 2025-07-28 01:29:03,751 | INFO     | [payload] control thread has finished
[2025-07-27 21:29:31] 2025-07-28 01:29:03,934 | INFO     | [payload] failed_post thread has finished
[2025-07-27 21:29:31] 2025-07-28 01:29:04,218 | INFO     | [job] control thread has finished
[2025-07-27 21:29:31] 2025-07-28 01:29:04,561 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:29:31] 2025-07-28 01:29:04,698 | INFO     | [data] copytool_out thread has finished
[2025-07-27 21:29:31] 2025-07-28 01:29:05,566 | INFO     | [job] queue monitor thread has finished
[2025-07-27 21:29:31] 2025-07-28 01:29:07,250 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 21:29:31] 2025-07-28 01:29:08,767 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140299784202048)>', '<ExcThread(monitor, started 140299426834176)>']
[2025-07-27 21:29:31] 2025-07-28 01:29:13,782 | INFO     | all workflow threads have been joined
[2025-07-27 21:29:31] 2025-07-28 01:29:13,782 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 21:29:31] 2025-07-28 01:29:13,783 | INFO     | traces error code: 0
[2025-07-27 21:29:31] 2025-07-28 01:29:13,783 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 21:29:31] 2025-07-28 01:29:31,240 | INFO     | PID=254379 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 21:29:31] 2025-07-28 01:29:31,240 | INFO     | .. there are 15 such processes running
[2025-07-27 21:29:31] 2025-07-28 01:29:31,240 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 21:29:31] 2025-07-28 01:29:31,240 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 21:29:31] 2025-07-28 01:29:31,240 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 21:29:31] 2025-07-28 01:29:31,240 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 21:29:31] 2025-07-28 01:29:31,240 | INFO     | [monitor] control thread has ended
[2025-07-27 21:29:31] 2025-07-28 01:29:31,326 [wrapper] ==== pilot stdout END ====
[2025-07-27 21:29:31] 2025-07-28 01:29:31,329 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 21:29:31] 2025-07-28 01:29:31,331 [wrapper] pilotpid: 254379
[2025-07-27 21:29:31] 2025-07-28 01:29:31,335 [wrapper] Pilot exit status: 0
[2025-07-27 21:29:31] 2025-07-28 01:29:31,344 [wrapper] pandaids: 6747499881
[2025-07-27 21:29:31] 2025-07-28 01:29:31,425 [wrapper] cleanup supervisor_pilot  410179 254380
[2025-07-27 21:29:31] 2025-07-28 01:29:31,428 [wrapper] Test setup, not cleaning
[2025-07-27 21:29:31] 2025-07-28 01:29:31,431 [wrapper] apfmon messages muted
[2025-07-27 21:29:31] 2025-07-28 01:29:31,434 [wrapper] ==== wrapper stdout END ====
[2025-07-27 21:29:31] 2025-07-28 01:29:31,436 [wrapper] ==== wrapper stderr END ====
[2025-07-27 21:29:31]  *** Error codes and diagnostics ***
[2025-07-27 21:29:31]     "exeErrorCode": 0,
[2025-07-27 21:29:31]     "exeErrorDiag": "",
[2025-07-27 21:29:31]     "pilotErrorCode": 0,
[2025-07-27 21:29:31]     "pilotErrorDiag": "",
[2025-07-27 21:29:31]  *** Listing of results directory ***
[2025-07-27 21:29:31] total 434980
[2025-07-27 21:29:31] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 10:53 pilot3.tar.gz
[2025-07-27 21:29:31] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 11:01 queuedata.json
[2025-07-27 21:29:31] -rwx------. 1 boincer umatlas     36292 Jul 27 11:02 runpilot2-wrapper.sh
[2025-07-27 21:29:31] -rw-r--r--. 1 boincer umatlas       100 Jul 27 19:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 21:29:31] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 19:59 run_atlas
[2025-07-27 21:29:31] -rw-r--r--. 1 boincer umatlas       105 Jul 27 19:59 job.xml
[2025-07-27 21:29:31] -rw-r--r--. 2 boincer umatlas 230387633 Jul 27 19:59 EVNT.45743347._002744.pool.root.1
[2025-07-27 21:29:31] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 19:59 start_atlas.sh
[2025-07-27 21:29:31] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 19:59 shared
[2025-07-27 21:29:31] -rw-r--r--. 2 boincer umatlas    542899 Jul 27 19:59 input.tar.gz
[2025-07-27 21:29:31] -rw-r--r--. 1 boincer umatlas         0 Jul 27 19:59 boinc_lockfile
[2025-07-27 21:29:31] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 19:59 pandaJob.out
[2025-07-27 21:29:31] -rw-------. 1 boincer umatlas    980125 Jul 27 19:59 agis_schedconf.cvmfs.json
[2025-07-27 21:29:31] -rw-------. 1 boincer umatlas   1593052 Jul 27 19:59 agis_ddmendpoints.agis.ALL.json
[2025-07-27 21:29:31] drwx------. 4 boincer umatlas      4096 Jul 27 19:59 pilot3
[2025-07-27 21:29:31] -rw-r--r--. 1 boincer umatlas      6944 Jul 27 21:18 init_data.xml
[2025-07-27 21:29:31] -rw-------. 1 boincer umatlas 209490008 Jul 27 21:28 HITS.45743349._051266.pool.root.1
[2025-07-27 21:29:31] -rw-r--r--. 1 boincer umatlas       530 Jul 27 21:28 boinc_task_state.xml
[2025-07-27 21:29:31] -rw-------. 1 boincer umatlas        95 Jul 27 21:28 pilot_heartbeat.json
[2025-07-27 21:29:31] -rw-------. 1 boincer umatlas      1030 Jul 27 21:28 memory_monitor_summary.json
[2025-07-27 21:29:31] -rw-------. 1 boincer umatlas    319450 Jul 27 21:28 log.45743349._051266.job.log.tgz.1
[2025-07-27 21:29:31] -rw-------. 1 boincer umatlas      7774 Jul 27 21:28 heartbeat.json
[2025-07-27 21:29:31] -rw-r--r--. 1 boincer umatlas        27 Jul 27 21:29 wrapper_checkpoint.txt
[2025-07-27 21:29:31] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 21:29 boinc_mmap_file
[2025-07-27 21:29:31] -rw-------. 1 boincer umatlas       822 Jul 27 21:29 pilotlog.txt
[2025-07-27 21:29:31] -rw-------. 1 boincer umatlas    514462 Jul 27 21:29 log.45743349._051266.job.log.1
[2025-07-27 21:29:31] -rw-------. 1 boincer umatlas       357 Jul 27 21:29 output.list
[2025-07-27 21:29:31] -rw-r--r--. 1 boincer umatlas       620 Jul 27 21:29 runtime_log
[2025-07-27 21:29:31] -rw-------. 1 boincer umatlas    849920 Jul 27 21:29 result.tar.gz
[2025-07-27 21:29:31] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 21:29 runtime_log.err
[2025-07-27 21:29:31] -rw-------. 1 boincer umatlas       652 Jul 27 21:29 hjZLDmV4H07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmZcVLDmKrGBHn.diag
[2025-07-27 21:29:31] -rw-r--r--. 1 boincer umatlas     21858 Jul 27 21:29 stderr.txt
[2025-07-27 21:29:31] HITS file was successfully produced:
[2025-07-27 21:29:31] -rw-------. 1 boincer umatlas 209490008 Jul 27 21:28 shared/HITS.pool.root.1
[2025-07-27 21:29:31]  *** Contents of shared directory: ***
[2025-07-27 21:29:31] total 430960
[2025-07-27 21:29:31] -rw-r--r--. 2 boincer umatlas 230387633 Jul 27 19:59 ATLAS.root_0
[2025-07-27 21:29:31] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 19:59 start_atlas.sh
[2025-07-27 21:29:31] -rw-r--r--. 2 boincer umatlas    542899 Jul 27 19:59 input.tar.gz
[2025-07-27 21:29:31] -rw-------. 1 boincer umatlas 209490008 Jul 27 21:28 HITS.pool.root.1
[2025-07-27 21:29:31] -rw-------. 1 boincer umatlas    849920 Jul 27 21:29 result.tar.gz
21:29:33 (249927): run_atlas exited; CPU time 38744.255473
21:29:33 (249927): called boinc_finish(0)

</stderr_txt>
]]>

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