Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:22:52 (3519985): wrapper (7.7.26015): starting
07:22:52 (3519985): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 07:22:52] Arguments: --nthreads 12
[2025-07-28 07:22:52] Threads: 12
[2025-07-28 07:22:52] Checking for CVMFS
[2025-07-28 07:22:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 07:22:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 07:22:52] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 07:22:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 07:22:52] 2.13.1.0 95439 9689 102912 148837 0 56 2723972 4097025 0 130560 0 8079658 99.990 361949 6514 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-07-28 07:22:52] CVMFS is ok
[2025-07-28 07:22:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 07:22:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 07:22:52] Further information can be found at the LHC@home message board.
[2025-07-28 07:22:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 07:22:52] Checking for apptainer binary...
[2025-07-28 07:22:52] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-07-28 07:22:52] apptainer is not installed, using version from CVMFS
[2025-07-28 07:22:52] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 07:22:52] pckelar5.cern.ch
[2025-07-28 07:22:52] apptainer works
[2025-07-28 07:22:52] Set ATHENA_PROC_NUMBER=12
[2025-07-28 07:22:52] Set ATHENA_CORE_NUMBER=12
[2025-07-28 07:22:52] Starting ATLAS job with PandaID=6747411185
[2025-07-28 07:22:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 08:44:26]  *** The last 200 lines of the pilot log: ***
[2025-07-28 08:44:26]  is_tar=False
[2025-07-28 08:44:26]  lfn=log.45743349._048426.job.log.tgz.1
[2025-07-28 08:44:26]  mtime=0
[2025-07-28 08:44:26]  protocol_id=None
[2025-07-28 08:44:26]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 08:44:26]  replicas=None
[2025-07-28 08:44:26]  scope=mc23_13p6TeV
[2025-07-28 08:44:26]  status=None
[2025-07-28 08:44:26]  status_code=0
[2025-07-28 08:44:26]  storage_token=
[2025-07-28 08:44:26]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6747411185/log.45743349._048426.job.log.tgz.1
[2025-07-28 08:44:26]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/55/04/log.45743349._048426.job.log.tgz.1
[2025-07-28 08:44:26]  workdir=None
[2025-07-28 08:44:26] ]
[2025-07-28 08:44:26] 2025-07-28 06:43:46,918 | INFO     | transferring file log.45743349._048426.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6747411185/log.45743349._048426.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-07-28 08:44:26] 2025-07-28 06:43:46,918 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6747411185/log.45743349._048426.job.log.tgz.1 /var/lib/boinc/slots/0/log.45743349._048426.job
[2025-07-28 08:44:26] 2025-07-28 06:43:46,932 | INFO     | adding to output.list: log.45743349._048426.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/55/04/log.45743349._048426.job.log.tg
[2025-07-28 08:44:26] 2025-07-28 06:43:46,933 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 08:44:26] 2025-07-28 06:43:46,933 | INFO     | summary of transferred files:
[2025-07-28 08:44:26] 2025-07-28 06:43:46,933 | INFO     |  -- lfn=log.45743349._048426.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 08:44:26] 2025-07-28 06:43:46,933 | INFO     | stage-out finished correctly
[2025-07-28 08:44:26] 2025-07-28 06:43:47,054 | INFO     | monitor loop #360: job 0:6747411185 is in state 'finished'
[2025-07-28 08:44:26] 2025-07-28 06:43:47,055 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 08:44:26] 2025-07-28 06:43:47,695 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 08:44:26] 2025-07-28 06:43:49,504 | INFO     | job 6747411185 has state=finished
[2025-07-28 08:44:26] 2025-07-28 06:43:49,505 | INFO     | preparing for final server update for job 6747411185 in state='finished'
[2025-07-28 08:44:26] 2025-07-28 06:43:49,505 | INFO     | this job has now completed (state=finished)
[2025-07-28 08:44:26] 2025-07-28 06:43:49,505 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 08:44:26] 2025-07-28 06:43:49,505 | INFO     | log transfer has been attempted: DONE
[2025-07-28 08:44:26] 2025-07-28 06:43:49,505 | INFO     | job 6747411185 has finished - writing final server update
[2025-07-28 08:44:26] 2025-07-28 06:43:49,505 | INFO     | total number of processed events: 400 (read)
[2025-07-28 08:44:26] 2025-07-28 06:43:49,507 | INFO     | executing command: lscpu
[2025-07-28 08:44:26] 2025-07-28 06:43:49,527 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 08:44:26] 2025-07-28 06:43:49,558 | INFO     | monitor loop #361: job 0:6747411185 is in state 'finished'
[2025-07-28 08:44:26] 2025-07-28 06:43:49,558 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 08:44:26] 2025-07-28 06:43:52,061 | INFO     | monitor loop #362: job 0:6747411185 is in state 'finished'
[2025-07-28 08:44:26] 2025-07-28 06:43:52,061 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 08:44:26] 2025-07-28 06:43:53,685 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-28 08:44:26] 2025-07-28 06:43:53,687 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 2425.0049999999997
[2025-07-28 08:44:26] 2025-07-28 06:43:53,688 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6747411185/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 08:44:26] 2025-07-28 06:43:53,689 | INFO     | extracted standard info from prmon json
[2025-07-28 08:44:26] 2025-07-28 06:43:53,689 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 08:44:26] 2025-07-28 06:43:53,689 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 08:44:26] 2025-07-28 06:43:53,690 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 08:44:26] 2025-07-28 06:43:53,690 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 08:44:26] 2025-07-28 06:43:53,691 | INFO     | fitting pss+swap vs Time
[2025-07-28 08:44:26] 2025-07-28 06:43:53,691 | INFO     | sum of square deviations: 120605052.0
[2025-07-28 08:44:26] 2025-07-28 06:43:53,692 | INFO     | sum of deviations: -15746477658.0
[2025-07-28 08:44:26] 2025-07-28 06:43:53,692 | INFO     | mean x: 1753682703.0
[2025-07-28 08:44:26] 2025-07-28 06:43:53,692 | INFO     | mean y: 2935874.4657534244
[2025-07-28 08:44:26] 2025-07-28 06:43:53,692 | INFO     | -- intersect: 228967851059.03488
[2025-07-28 08:44:26] 2025-07-28 06:43:53,692 | INFO     | intersect: 228967851059.03488
[2025-07-28 08:44:26] 2025-07-28 06:43:53,692 | INFO     | chi2: 0.1076180969129983
[2025-07-28 08:44:26] 2025-07-28 06:43:53,692 | INFO     | -- intersect: 228967851059.03488
[2025-07-28 08:44:26] 2025-07-28 06:43:53,692 | INFO     | current memory leak: -130.56 B/s (using 73 data points, chi2=0.11)
[2025-07-28 08:44:26] 2025-07-28 06:43:53,693 | INFO     | could have reported an average CPU frequency of 2555 MHz (6 samples)
[2025-07-28 08:44:26] 2025-07-28 06:43:53,693 | INFO     | ..............................
[2025-07-28 08:44:26] 2025-07-28 06:43:53,693 | INFO     | . Timing measurements:
[2025-07-28 08:44:26] 2025-07-28 06:43:53,693 | INFO     | . get job = 0 s
[2025-07-28 08:44:26] 2025-07-28 06:43:53,693 | INFO     | . initial setup = 1 s
[2025-07-28 08:44:26] 2025-07-28 06:43:53,693 | INFO     | . payload setup = 5 s
[2025-07-28 08:44:26] 2025-07-28 06:43:53,693 | INFO     | . stage-in = 0 s
[2025-07-28 08:44:26] 2025-07-28 06:43:53,693 | INFO     | . payload execution = 4822 s
[2025-07-28 08:44:26] 2025-07-28 06:43:53,693 | INFO     | . stage-out = 0 s
[2025-07-28 08:44:26] 2025-07-28 06:43:53,693 | INFO     | . log creation = 0 s
[2025-07-28 08:44:26] 2025-07-28 06:43:53,693 | INFO     | ..............................
[2025-07-28 08:44:26] 2025-07-28 06:43:53,762 | INFO     | 
[2025-07-28 08:44:26] 2025-07-28 06:43:53,763 | INFO     | job summary report
[2025-07-28 08:44:26] 2025-07-28 06:43:53,763 | INFO     | --------------------------------------------------
[2025-07-28 08:44:26] 2025-07-28 06:43:53,763 | INFO     | PanDA job id: 6747411185
[2025-07-28 08:44:26] 2025-07-28 06:43:53,763 | INFO     | task id: 45743349
[2025-07-28 08:44:26] 2025-07-28 06:43:53,763 | INFO     | errors: (none)
[2025-07-28 08:44:26] 2025-07-28 06:43:53,763 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 08:44:26] 2025-07-28 06:43:53,763 | INFO     | pilot state: finished 
[2025-07-28 08:44:26] 2025-07-28 06:43:53,763 | INFO     | transexitcode: 0
[2025-07-28 08:44:26] 2025-07-28 06:43:53,763 | INFO     | exeerrorcode: 0
[2025-07-28 08:44:26] 2025-07-28 06:43:53,764 | INFO     | exeerrordiag: 
[2025-07-28 08:44:26] 2025-07-28 06:43:53,764 | INFO     | exitcode: 0
[2025-07-28 08:44:26] 2025-07-28 06:43:53,764 | INFO     | exitmsg: OK
[2025-07-28 08:44:26] 2025-07-28 06:43:53,764 | INFO     | cpuconsumptiontime: 51991 s
[2025-07-28 08:44:26] 2025-07-28 06:43:53,764 | INFO     | nevents: 400
[2025-07-28 08:44:26] 2025-07-28 06:43:53,764 | INFO     | neventsw: 0
[2025-07-28 08:44:26] 2025-07-28 06:43:53,764 | INFO     | pid: 3530779
[2025-07-28 08:44:26] 2025-07-28 06:43:53,764 | INFO     | pgrp: 3530779
[2025-07-28 08:44:26] 2025-07-28 06:43:53,764 | INFO     | corecount: 12
[2025-07-28 08:44:26] 2025-07-28 06:43:53,764 | INFO     | event service: False
[2025-07-28 08:44:26] 2025-07-28 06:43:53,764 | INFO     | sizes: {0: 2397248, 1: 2397503, 4: 2397765, 11: 2397793, 4832: 2424141, 4834: 2433323, 4840: 2433461}
[2025-07-28 08:44:26] 2025-07-28 06:43:53,764 | INFO     | --------------------------------------------------
[2025-07-28 08:44:26] 2025-07-28 06:43:53,764 | INFO     | 
[2025-07-28 08:44:26] 2025-07-28 06:43:53,765 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-07-28 08:44:26] 2025-07-28 06:43:53,785 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 08:44:26] 2025-07-28 06:43:53,785 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 08:44:26] 2025-07-28 06:43:53,785 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 08:44:26] 2025-07-28 06:43:53,785 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 08:44:26] 2025-07-28 06:43:53,785 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 08:44:26] 2025-07-28 06:43:53,785 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 08:44:26] 2025-07-28 06:43:53,785 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 08:44:26] 2025-07-28 06:43:53,786 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 08:44:26] 2025-07-28 06:43:53,786 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 08:44:26] 2025-07-28 06:43:53,786 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 08:44:26] 2025-07-28 06:43:53,786 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 08:44:26] 2025-07-28 06:43:53,786 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 08:44:26] 2025-07-28 06:43:53,786 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 08:44:26] 2025-07-28 06:43:53,786 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 08:44:26] 2025-07-28 06:43:53,786 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 08:44:26] 2025-07-28 06:43:53,786 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 08:44:26] 2025-07-28 06:43:53,786 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 08:44:26] 2025-07-28 06:43:53,786 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 08:44:26] 2025-07-28 06:43:53,787 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 08:44:26] 2025-07-28 06:43:53,787 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 08:44:26] 2025-07-28 06:43:53,787 | INFO     | job 6747411185 has completed (purged errors)
[2025-07-28 08:44:26] 2025-07-28 06:43:53,787 | INFO     | overall cleanup function is called
[2025-07-28 08:44:26] 2025-07-28 06:43:54,401 | INFO     | PID=3523664 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 08:44:26] 2025-07-28 06:43:54,794 | INFO     | --- collectZombieJob: --- 10, [3530779]
[2025-07-28 08:44:26] 2025-07-28 06:43:54,794 | INFO     | zombie collector waiting for pid 3530779
[2025-07-28 08:44:26] 2025-07-28 06:43:54,794 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 08:44:26] 2025-07-28 06:43:54,794 | INFO     | collected zombie processes
[2025-07-28 08:44:26] 2025-07-28 06:43:54,794 | INFO     | will attempt to kill all subprocesses of pid=3530779
[2025-07-28 08:44:26] 2025-07-28 06:43:54,866 | INFO     | process IDs to be killed: [3530779] (in reverse order)
[2025-07-28 08:44:26] 2025-07-28 06:43:54,902 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 08:44:26] 2025-07-28 06:43:54,902 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 08:44:26] 2025-07-28 06:43:54,904 | INFO     | did not find any defunct processes belonging to 3530779
[2025-07-28 08:44:26] 2025-07-28 06:43:54,906 | INFO     | did not find any defunct processes belonging to 3530779
[2025-07-28 08:44:26] 2025-07-28 06:43:54,906 | INFO     | ready for new job
[2025-07-28 08:44:26] 2025-07-28 06:43:54,907 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 08:44:26] 2025-07-28 06:43:54,908 | INFO     | ***************************************
[2025-07-28 08:44:26] 2025-07-28 06:43:54,908 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 08:44:26] 2025-07-28 06:43:54,908 | INFO     | ***************************************
[2025-07-28 08:44:26] 2025-07-28 06:43:54,908 | INFO     | 
[2025-07-28 08:44:26] 2025-07-28 06:43:54,909 | INFO     | architecture information:
[2025-07-28 08:44:26] 2025-07-28 06:43:54,909 | INFO     | executing command: cat /etc/os-release
[2025-07-28 08:44:26] 2025-07-28 06:43:54,920 | INFO     | cat /etc/os-release:
[2025-07-28 08:44:26] NAME="CentOS Linux"
[2025-07-28 08:44:26] VERSION="7 (Core)"
[2025-07-28 08:44:26] ID="centos"
[2025-07-28 08:44:26] ID_LIKE="rhel fedora"
[2025-07-28 08:44:26] VERSION_ID="7"
[2025-07-28 08:44:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 08:44:26] ANSI_COLOR="0;31"
[2025-07-28 08:44:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 08:44:26] HOME_URL="https://www.centos.org/"
[2025-07-28 08:44:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 08:44:26] 
[2025-07-28 08:44:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 08:44:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 08:44:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 08:44:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 08:44:26] 
[2025-07-28 08:44:26] 2025-07-28 06:43:54,920 | INFO     | ***************************************
[2025-07-28 08:44:26] 2025-07-28 06:43:55,423 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-07-28 08:44:26] 2025-07-28 06:43:55,436 | INFO     | sufficient remaining disk space (1817746341888 B)
[2025-07-28 08:44:26] 2025-07-28 06:43:55,436 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 08:44:26] 2025-07-28 06:43:55,436 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 08:44:26] 2025-07-28 06:43:55,436 | INFO     | update_server=False
[2025-07-28 08:44:26] 2025-07-28 06:43:55,436 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 08:44:26] 2025-07-28 06:43:55,437 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 08:44:26] 2025-07-28 06:43:55,437 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 08:44:26] 2025-07-28 06:43:55,569 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 08:44:26] 2025-07-28 06:43:55,569 | INFO     | aborting loop
[2025-07-28 08:44:26] 2025-07-28 06:43:55,615 | INFO     | all payload control threads have been joined
[2025-07-28 08:44:26] 2025-07-28 06:43:56,080 | INFO     | all data control threads have been joined
[2025-07-28 08:44:26] 2025-07-28 06:43:56,442 | INFO     | [job] retrieve thread has finished
[2025-07-28 08:44:26] 2025-07-28 06:43:56,442 | INFO     | [job] queue monitor thread has finished
[2025-07-28 08:44:26] 2025-07-28 06:43:56,574 | INFO     | [job] job monitor thread has finished
[2025-07-28 08:44:26] 2025-07-28 06:43:56,620 | INFO     | [payload] control thread has finished
[2025-07-28 08:44:26] 2025-07-28 06:43:56,824 | INFO     | [payload] failed_post thread has finished
[2025-07-28 08:44:26] 2025-07-28 06:43:56,902 | INFO     | [job] validate thread has finished
[2025-07-28 08:44:26] 2025-07-28 06:43:57,061 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 08:44:26] 2025-07-28 06:43:57,064 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 08:44:26] 2025-07-28 06:43:57,071 | INFO     | all job control threads have been joined
[2025-07-28 08:44:26] 2025-07-28 06:43:57,086 | INFO     | [data] control thread has finished
[2025-07-28 08:44:26] 2025-07-28 06:43:57,246 | INFO     | [data] copytool_in thread has finished
[2025-07-28 08:44:26] 2025-07-28 06:43:57,257 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 08:44:26] 2025-07-28 06:43:57,442 | INFO     | [data] copytool_out thread has finished
[2025-07-28 08:44:26] 2025-07-28 06:43:57,759 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 08:44:26] 2025-07-28 06:43:57,835 | INFO     | [payload] validate_post thread has finished
[2025-07-28 08:44:26] 2025-07-28 06:43:58,077 | INFO     | [job] control thread has finished
[2025-07-28 08:44:26] 2025-07-28 06:43:58,271 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 08:44:26] 2025-07-28 06:44:02,276 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 08:44:26] 2025-07-28 06:44:02,454 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140581192898368)>', '<ExcThread(monitor, started 140579832846080)>']
[2025-07-28 08:44:26] 2025-07-28 06:44:07,474 | INFO     | all workflow threads have been joined
[2025-07-28 08:44:26] 2025-07-28 06:44:07,474 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 08:44:26] 2025-07-28 06:44:07,474 | INFO     | traces error code: 0
[2025-07-28 08:44:26] 2025-07-28 06:44:07,474 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 08:44:26] 2025-07-28 06:44:26,581 | INFO     | PID=3523664 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 08:44:26] 2025-07-28 06:44:26,582 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 08:44:26] 2025-07-28 06:44:26,582 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 08:44:26] 2025-07-28 06:44:26,582 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 08:44:26] 2025-07-28 06:44:26,582 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 08:44:26] 2025-07-28 06:44:26,582 | INFO     | [monitor] control thread has ended
[2025-07-28 08:44:26] 2025-07-28 06:44:26,653 [wrapper] ==== pilot stdout END ====
[2025-07-28 08:44:26] 2025-07-28 06:44:26,655 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 08:44:26] 2025-07-28 06:44:26,658 [wrapper] pilotpid: 3523664
[2025-07-28 08:44:26] 2025-07-28 06:44:26,661 [wrapper] Pilot exit status: 0
[2025-07-28 08:44:26] 2025-07-28 06:44:26,669 [wrapper] pandaids: 6747411185
[2025-07-28 08:44:26] 2025-07-28 06:44:26,688 [wrapper] cleanup supervisor_pilot 3547463 3523665
[2025-07-28 08:44:26] 2025-07-28 06:44:26,690 [wrapper] Test setup, not cleaning
[2025-07-28 08:44:26] 2025-07-28 06:44:26,692 [wrapper] apfmon messages muted
[2025-07-28 08:44:26] 2025-07-28 06:44:26,694 [wrapper] ==== wrapper stdout END ====
[2025-07-28 08:44:26] 2025-07-28 06:44:26,696 [wrapper] ==== wrapper stderr END ====
[2025-07-28 08:44:26]  *** Error codes and diagnostics ***
[2025-07-28 08:44:26]     "exeErrorCode": 0,
[2025-07-28 08:44:26]     "exeErrorDiag": "",
[2025-07-28 08:44:26]     "pilotErrorCode": 0,
[2025-07-28 08:44:26]     "pilotErrorDiag": "",
[2025-07-28 08:44:26]  *** Listing of results directory ***
[2025-07-28 08:44:26] total 350640
[2025-07-28 08:44:26] -rw-r--r-- 1 boinc boinc    530466 Jul 27 13:59 pilot3.tar.gz
[2025-07-28 08:44:26] -rw-r--r-- 1 boinc boinc      5112 Jul 27 14:28 queuedata.json
[2025-07-28 08:44:26] -rwx------ 1 boinc boinc     36292 Jul 27 14:29 runpilot2-wrapper.sh
[2025-07-28 08:44:26] -rw-r--r-- 1 boinc boinc       100 Jul 28 07:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 08:44:26] -rwxr-xr-x 1 boinc boinc      7986 Jul 28 07:22 run_atlas
[2025-07-28 08:44:26] -rw-r--r-- 1 boinc boinc       105 Jul 28 07:22 job.xml
[2025-07-28 08:44:26] -rw-r--r-- 1 boinc boinc      6294 Jul 28 07:22 init_data.xml
[2025-07-28 08:44:26] -rw-r--r-- 2 boinc boinc 144101601 Jul 28 07:22 EVNT.45743347._002684.pool.root.1
[2025-07-28 08:44:26] -rw-r--r-- 2 boinc boinc     15095 Jul 28 07:22 start_atlas.sh
[2025-07-28 08:44:26] drwxrwx--x 2 boinc boinc        68 Jul 28 07:22 shared
[2025-07-28 08:44:26] -rw-r--r-- 2 boinc boinc    542893 Jul 28 07:22 input.tar.gz
[2025-07-28 08:44:26] -rw-r--r-- 1 boinc boinc         0 Jul 28 07:22 boinc_lockfile
[2025-07-28 08:44:26] -rw-r--r-- 1 boinc boinc      2563 Jul 28 07:22 pandaJob.out
[2025-07-28 08:44:26] -rw------- 1 boinc boinc    980125 Jul 28 07:22 agis_schedconf.cvmfs.json
[2025-07-28 08:44:26] -rw------- 1 boinc boinc   1593052 Jul 28 07:22 agis_ddmendpoints.agis.ALL.json
[2025-07-28 08:44:26] drwx------ 4 boinc boinc      4096 Jul 28 07:22 pilot3
[2025-07-28 08:44:26] -rw------- 1 boinc boinc 209442918 Jul 28 08:43 HITS.45743349._048426.pool.root.1
[2025-07-28 08:44:26] -rw-r--r-- 1 boinc boinc       530 Jul 28 08:43 boinc_task_state.xml
[2025-07-28 08:44:26] -rw------- 1 boinc boinc      1014 Jul 28 08:43 memory_monitor_summary.json
[2025-07-28 08:44:26] -rw------- 1 boinc boinc    360760 Jul 28 08:43 log.45743349._048426.job.log.tgz.1
[2025-07-28 08:44:26] -rw------- 1 boinc boinc      7793 Jul 28 08:43 heartbeat.json
[2025-07-28 08:44:26] -rw-r--r-- 1 boinc boinc      8192 Jul 28 08:44 boinc_mmap_file
[2025-07-28 08:44:26] -rw-r--r-- 1 boinc boinc        27 Jul 28 08:44 wrapper_checkpoint.txt
[2025-07-28 08:44:26] -rw------- 1 boinc boinc       747 Jul 28 08:44 pilotlog.txt
[2025-07-28 08:44:26] -rw------- 1 boinc boinc        95 Jul 28 08:44 pilot_heartbeat.json
[2025-07-28 08:44:26] -rw------- 1 boinc boinc    463558 Jul 28 08:44 log.45743349._048426.job.log.1
[2025-07-28 08:44:26] -rw------- 1 boinc boinc       357 Jul 28 08:44 output.list
[2025-07-28 08:44:26] -rw-r--r-- 1 boinc boinc       620 Jul 28 08:44 runtime_log
[2025-07-28 08:44:26] -rw------- 1 boinc boinc    839680 Jul 28 08:44 result.tar.gz
[2025-07-28 08:44:26] -rw-r--r-- 1 boinc boinc      8684 Jul 28 08:44 runtime_log.err
[2025-07-28 08:44:26] -rw------- 1 boinc boinc       655 Jul 28 08:44 0XPNDm8fF07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmhFVLDmqcQp3n.diag
[2025-07-28 08:44:26] -rw-r--r-- 1 boinc boinc     21813 Jul 28 08:44 stderr.txt
[2025-07-28 08:44:26] HITS file was successfully produced:
[2025-07-28 08:44:26] -rw------- 1 boinc boinc 209442918 Jul 28 08:43 shared/HITS.pool.root.1
[2025-07-28 08:44:26]  *** Contents of shared directory: ***
[2025-07-28 08:44:26] total 346632
[2025-07-28 08:44:26] -rw-r--r-- 2 boinc boinc 144101601 Jul 28 07:22 ATLAS.root_0
[2025-07-28 08:44:26] -rw-r--r-- 2 boinc boinc     15095 Jul 28 07:22 start_atlas.sh
[2025-07-28 08:44:26] -rw-r--r-- 2 boinc boinc    542893 Jul 28 07:22 input.tar.gz
[2025-07-28 08:44:26] -rw------- 1 boinc boinc 209442918 Jul 28 08:43 HITS.pool.root.1
[2025-07-28 08:44:26] -rw------- 1 boinc boinc    839680 Jul 28 08:44 result.tar.gz
08:44:28 (3519985): run_atlas exited; CPU time 52027.222886
08:44:28 (3519985): called boinc_finish(0)

</stderr_txt>
]]>

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