Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:46:12 (3051837): wrapper (7.7.26015): starting
19:46:12 (3051837): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 19:46:12] Arguments: --nthreads 8
[2025-07-27 19:46:12] Threads: 8
[2025-07-27 19:46:12] Checking for CVMFS
[2025-07-27 19:46:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 19:46:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 19:46:13] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 19:46:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 19:46:13] 2.13.1.0 641173 14848 240508 148828 1 260 37900717 40960001 16727 16776704 0 51996514 99.809 51365513 40373 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 19:46:13] CVMFS is ok
[2025-07-27 19:46:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 19:46:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 19:46:13] Further information can be found at the LHC@home message board.
[2025-07-27 19:46:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 19:46:13] Checking for apptainer binary...
[2025-07-27 19:46:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 19:46:13] Running /usr/bin/apptainer --version
[2025-07-27 19:46:13] apptainer version 1.4.1-1.el9
[2025-07-27 19:46:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 19:46:13] c-212-8.aglt2.org
[2025-07-27 19:46:13] apptainer works
[2025-07-27 19:46:13] Set ATHENA_PROC_NUMBER=8
[2025-07-27 19:46:13] Set ATHENA_CORE_NUMBER=8
[2025-07-27 19:46:13] Starting ATLAS job with PandaID=6748134676
[2025-07-27 19:46:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 21:20:38]  *** The last 200 lines of the pilot log: ***
[2025-07-27 21:20:38]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 21:20:38]  replicas=None
[2025-07-27 21:20:38]  scope=mc23_13p6TeV
[2025-07-27 21:20:38]  status=None
[2025-07-27 21:20:38]  status_code=0
[2025-07-27 21:20:38]  storage_token=
[2025-07-27 21:20:38]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6748134676/log.45743349._055606.job.log.tgz.1
[2025-07-27 21:20:38]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b9/e4/log.45743349._055606.job.log.tgz.1
[2025-07-27 21:20:38]  workdir=None
[2025-07-27 21:20:38] ]
[2025-07-27 21:20:38] 2025-07-28 01:19:56,147 | INFO     | transferring file log.45743349._055606.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6748134676/log.45743349._055606.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 21:20:38] 2025-07-28 01:19:56,148 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6748134676/log.45743349._055606.job.log.tgz.1 /tmp/boinchome/slots/1/log.45743349._055606.job
[2025-07-27 21:20:38] 2025-07-28 01:19:56,164 | INFO     | adding to output.list: log.45743349._055606.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b9/e4/log.45743349._055606.job.log.tg
[2025-07-27 21:20:38] 2025-07-28 01:19:56,165 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 21:20:38] 2025-07-28 01:19:56,165 | INFO     | summary of transferred files:
[2025-07-27 21:20:38] 2025-07-28 01:19:56,165 | INFO     |  -- lfn=log.45743349._055606.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 21:20:38] 2025-07-28 01:19:56,165 | INFO     | stage-out finished correctly
[2025-07-27 21:20:38] 2025-07-28 01:19:57,438 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 21:20:38] 2025-07-28 01:19:57,822 | INFO     | monitor loop #404: job 0:6748134676 is in state 'finished'
[2025-07-27 21:20:38] 2025-07-28 01:19:57,823 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:20:38] 2025-07-28 01:20:00,087 | INFO     | job 6748134676 has state=finished
[2025-07-27 21:20:38] 2025-07-28 01:20:00,088 | INFO     | preparing for final server update for job 6748134676 in state='finished'
[2025-07-27 21:20:38] 2025-07-28 01:20:00,088 | INFO     | this job has now completed (state=finished)
[2025-07-27 21:20:38] 2025-07-28 01:20:00,088 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 21:20:38] 2025-07-28 01:20:00,088 | INFO     | log transfer has been attempted: DONE
[2025-07-27 21:20:38] 2025-07-28 01:20:00,088 | INFO     | job 6748134676 has finished - writing final server update
[2025-07-27 21:20:38] 2025-07-28 01:20:00,089 | INFO     | total number of processed events: 400 (read)
[2025-07-27 21:20:38] 2025-07-28 01:20:00,092 | INFO     | executing command: lscpu
[2025-07-27 21:20:38] 2025-07-28 01:20:00,158 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 21:20:38] 2025-07-28 01:20:00,325 | INFO     | monitor loop #405: job 0:6748134676 is in state 'finished'
[2025-07-27 21:20:38] 2025-07-28 01:20:00,326 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:20:38] 2025-07-28 01:20:02,829 | INFO     | monitor loop #406: job 0:6748134676 is in state 'finished'
[2025-07-27 21:20:38] 2025-07-28 01:20:02,830 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:20:38] 2025-07-28 01:20:05,333 | INFO     | monitor loop #407: job 0:6748134676 is in state 'finished'
[2025-07-27 21:20:38] 2025-07-28 01:20:05,333 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:20:38] 2025-07-28 01:20:05,567 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 21:20:38] 2025-07-28 01:20:05,572 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3019.420895833333
[2025-07-27 21:20:38] 2025-07-28 01:20:05,586 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6748134676/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 21:20:38] 2025-07-28 01:20:05,587 | INFO     | extracted standard info from prmon json
[2025-07-27 21:20:38] 2025-07-28 01:20:05,587 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 21:20:38] 2025-07-28 01:20:05,587 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 21:20:38] 2025-07-28 01:20:05,588 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 21:20:38] 2025-07-28 01:20:05,588 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 21:20:38] 2025-07-28 01:20:05,590 | INFO     | fitting pss+swap vs Time
[2025-07-27 21:20:38] 2025-07-28 01:20:05,590 | INFO     | sum of square deviations: 190403570.0
[2025-07-27 21:20:38] 2025-07-28 01:20:05,591 | INFO     | sum of deviations: -13602295389.0
[2025-07-27 21:20:38] 2025-07-28 01:20:05,591 | INFO     | mean x: 1753662901.0
[2025-07-27 21:20:38] 2025-07-28 01:20:05,591 | INFO     | mean y: 2637592.529411765
[2025-07-27 21:20:38] 2025-07-28 01:20:05,591 | INFO     | -- intersect: 125283065854.10384
[2025-07-27 21:20:38] 2025-07-28 01:20:05,591 | INFO     | intersect: 125283065854.10384
[2025-07-27 21:20:38] 2025-07-28 01:20:05,591 | INFO     | chi2: 0.16061226269281118
[2025-07-27 21:20:38] 2025-07-28 01:20:05,591 | INFO     | -- intersect: 125283065854.10384
[2025-07-27 21:20:38] 2025-07-28 01:20:05,592 | INFO     | current memory leak: -71.44 B/s (using 85 data points, chi2=0.16)
[2025-07-27 21:20:38] 2025-07-28 01:20:05,592 | INFO     | could have reported an average CPU frequency of 2958 MHz (7 samples)
[2025-07-27 21:20:38] 2025-07-28 01:20:05,592 | INFO     | ..............................
[2025-07-27 21:20:38] 2025-07-28 01:20:05,592 | INFO     | . Timing measurements:
[2025-07-27 21:20:38] 2025-07-28 01:20:05,592 | INFO     | . get job = 0 s
[2025-07-27 21:20:38] 2025-07-28 01:20:05,592 | INFO     | . initial setup = 3 s
[2025-07-27 21:20:38] 2025-07-28 01:20:05,592 | INFO     | . payload setup = 13 s
[2025-07-27 21:20:38] 2025-07-28 01:20:05,592 | INFO     | . stage-in = 0 s
[2025-07-27 21:20:38] 2025-07-28 01:20:05,592 | INFO     | . payload execution = 5565 s
[2025-07-27 21:20:38] 2025-07-28 01:20:05,593 | INFO     | . stage-out = 0 s
[2025-07-27 21:20:38] 2025-07-28 01:20:05,593 | INFO     | . log creation = 0 s
[2025-07-27 21:20:38] 2025-07-28 01:20:05,593 | INFO     | ..............................
[2025-07-27 21:20:38] 2025-07-28 01:20:05,674 | INFO     | 
[2025-07-27 21:20:38] 2025-07-28 01:20:05,675 | INFO     | job summary report
[2025-07-27 21:20:38] 2025-07-28 01:20:05,675 | INFO     | --------------------------------------------------
[2025-07-27 21:20:38] 2025-07-28 01:20:05,675 | INFO     | PanDA job id: 6748134676
[2025-07-27 21:20:38] 2025-07-28 01:20:05,675 | INFO     | task id: 45743349
[2025-07-27 21:20:38] 2025-07-28 01:20:05,675 | INFO     | errors: (none)
[2025-07-27 21:20:38] 2025-07-28 01:20:05,675 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 21:20:38] 2025-07-28 01:20:05,675 | INFO     | pilot state: finished 
[2025-07-27 21:20:38] 2025-07-28 01:20:05,675 | INFO     | transexitcode: 0
[2025-07-27 21:20:38] 2025-07-28 01:20:05,675 | INFO     | exeerrorcode: 0
[2025-07-27 21:20:38] 2025-07-28 01:20:05,675 | INFO     | exeerrordiag: 
[2025-07-27 21:20:38] 2025-07-28 01:20:05,675 | INFO     | exitcode: 0
[2025-07-27 21:20:38] 2025-07-28 01:20:05,675 | INFO     | exitmsg: OK
[2025-07-27 21:20:38] 2025-07-28 01:20:05,676 | INFO     | cpuconsumptiontime: 38050 s
[2025-07-27 21:20:38] 2025-07-28 01:20:05,676 | INFO     | nevents: 400
[2025-07-27 21:20:38] 2025-07-28 01:20:05,676 | INFO     | neventsw: 0
[2025-07-27 21:20:38] 2025-07-28 01:20:05,676 | INFO     | pid: 3063769
[2025-07-27 21:20:38] 2025-07-28 01:20:05,676 | INFO     | pgrp: 3063769
[2025-07-27 21:20:38] 2025-07-28 01:20:05,676 | INFO     | corecount: 8
[2025-07-27 21:20:38] 2025-07-28 01:20:05,676 | INFO     | event service: False
[2025-07-27 21:20:38] 2025-07-28 01:20:05,676 | INFO     | sizes: {0: 2397425, 8: 2397687, 11: 2397715, 5582: 2424394, 5583: 2424393, 5584: 2433447, 5585: 2433631, 5594: 2433825}
[2025-07-27 21:20:38] 2025-07-28 01:20:05,676 | INFO     | --------------------------------------------------
[2025-07-27 21:20:38] 2025-07-28 01:20:05,676 | INFO     | 
[2025-07-27 21:20:38] 2025-07-28 01:20:05,676 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-27 21:20:38] 2025-07-28 01:20:05,706 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 21:20:38] 2025-07-28 01:20:05,706 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 21:20:38] 2025-07-28 01:20:05,706 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 21:20:38] 2025-07-28 01:20:05,706 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 21:20:38] 2025-07-28 01:20:05,706 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 21:20:38] 2025-07-28 01:20:05,706 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 21:20:38] 2025-07-28 01:20:05,706 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 21:20:38] 2025-07-28 01:20:05,706 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 21:20:38] 2025-07-28 01:20:05,707 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 21:20:38] 2025-07-28 01:20:05,707 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 21:20:38] 2025-07-28 01:20:05,707 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 21:20:38] 2025-07-28 01:20:05,707 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 21:20:38] 2025-07-28 01:20:05,707 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 21:20:38] 2025-07-28 01:20:05,707 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 21:20:38] 2025-07-28 01:20:05,707 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 21:20:38] 2025-07-28 01:20:05,707 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 21:20:38] 2025-07-28 01:20:05,707 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 21:20:38] 2025-07-28 01:20:05,707 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 21:20:38] 2025-07-28 01:20:05,707 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 21:20:38] 2025-07-28 01:20:05,707 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 21:20:38] 2025-07-28 01:20:05,707 | INFO     | job 6748134676 has completed (purged errors)
[2025-07-27 21:20:38] 2025-07-28 01:20:05,707 | INFO     | overall cleanup function is called
[2025-07-27 21:20:38] 2025-07-28 01:20:06,716 | INFO     | --- collectZombieJob: --- 10, [3063769]
[2025-07-27 21:20:38] 2025-07-28 01:20:06,716 | INFO     | zombie collector waiting for pid 3063769
[2025-07-27 21:20:38] 2025-07-28 01:20:06,716 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 21:20:38] 2025-07-28 01:20:06,716 | INFO     | collected zombie processes
[2025-07-27 21:20:38] 2025-07-28 01:20:06,716 | INFO     | will attempt to kill all subprocesses of pid=3063769
[2025-07-27 21:20:38] 2025-07-28 01:20:07,061 | INFO     | process IDs to be killed: [3063769] (in reverse order)
[2025-07-27 21:20:38] 2025-07-28 01:20:07,198 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 21:20:38] 2025-07-28 01:20:07,199 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 21:20:38] 2025-07-28 01:20:07,214 | INFO     | did not find any defunct processes belonging to 3063769
[2025-07-27 21:20:38] 2025-07-28 01:20:07,229 | INFO     | did not find any defunct processes belonging to 3063769
[2025-07-27 21:20:38] 2025-07-28 01:20:07,229 | INFO     | ready for new job
[2025-07-27 21:20:38] 2025-07-28 01:20:07,229 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 21:20:38] 2025-07-28 01:20:07,230 | INFO     | ***************************************
[2025-07-27 21:20:38] 2025-07-28 01:20:07,230 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 21:20:38] 2025-07-28 01:20:07,230 | INFO     | ***************************************
[2025-07-27 21:20:38] 2025-07-28 01:20:07,230 | INFO     | 
[2025-07-27 21:20:38] 2025-07-28 01:20:07,235 | INFO     | architecture information:
[2025-07-27 21:20:38] 2025-07-28 01:20:07,235 | INFO     | executing command: cat /etc/os-release
[2025-07-27 21:20:38] 2025-07-28 01:20:07,254 | INFO     | cat /etc/os-release:
[2025-07-27 21:20:38] NAME="CentOS Linux"
[2025-07-27 21:20:38] VERSION="7 (Core)"
[2025-07-27 21:20:38] ID="centos"
[2025-07-27 21:20:38] ID_LIKE="rhel fedora"
[2025-07-27 21:20:38] VERSION_ID="7"
[2025-07-27 21:20:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 21:20:38] ANSI_COLOR="0;31"
[2025-07-27 21:20:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 21:20:38] HOME_URL="https://www.centos.org/"
[2025-07-27 21:20:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 21:20:38] 
[2025-07-27 21:20:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 21:20:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 21:20:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 21:20:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 21:20:38] 
[2025-07-27 21:20:38] 2025-07-28 01:20:07,254 | INFO     | ***************************************
[2025-07-27 21:20:38] 2025-07-28 01:20:07,756 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-27 21:20:38] 2025-07-28 01:20:07,777 | INFO     | sufficient remaining disk space (129271595008 B)
[2025-07-27 21:20:38] 2025-07-28 01:20:07,777 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 21:20:38] 2025-07-28 01:20:07,777 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 21:20:38] 2025-07-28 01:20:07,777 | INFO     | update_server=False
[2025-07-27 21:20:38] 2025-07-28 01:20:07,777 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 21:20:38] 2025-07-28 01:20:07,836 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 21:20:38] 2025-07-28 01:20:07,836 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 21:20:38] 2025-07-28 01:20:07,836 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:20:38] 2025-07-28 01:20:07,836 | INFO     | will abort loop
[2025-07-27 21:20:38] 2025-07-28 01:20:08,038 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 21:20:38] 2025-07-28 01:20:08,105 | INFO     | all job control threads have been joined
[2025-07-27 21:20:38] 2025-07-28 01:20:08,328 | INFO     | all data control threads have been joined
[2025-07-27 21:20:38] 2025-07-28 01:20:08,332 | INFO     | all payload control threads have been joined
[2025-07-27 21:20:38] 2025-07-28 01:20:08,783 | INFO     | [job] retrieve thread has finished
[2025-07-27 21:20:38] 2025-07-28 01:20:08,840 | INFO     | [data] copytool_in thread has finished
[2025-07-27 21:20:38] 2025-07-28 01:20:08,841 | INFO     | [job] job monitor thread has finished
[2025-07-27 21:20:38] 2025-07-28 01:20:09,053 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 21:20:38] 2025-07-28 01:20:09,110 | INFO     | [job] control thread has finished
[2025-07-27 21:20:38] 2025-07-28 01:20:09,245 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 21:20:38] 2025-07-28 01:20:09,266 | INFO     | [job] validate thread has finished
[2025-07-27 21:20:38] 2025-07-28 01:20:09,333 | INFO     | [data] control thread has finished
[2025-07-27 21:20:38] 2025-07-28 01:20:09,338 | INFO     | [payload] control thread has finished
[2025-07-27 21:20:38] 2025-07-28 01:20:09,482 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 21:20:38] 2025-07-28 01:20:09,804 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 21:20:38] 2025-07-28 01:20:10,038 | INFO     | [payload] validate_post thread has finished
[2025-07-27 21:20:38] 2025-07-28 01:20:10,148 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 21:20:38] 2025-07-28 01:20:10,308 | INFO     | [payload] failed_post thread has finished
[2025-07-27 21:20:38] 2025-07-28 01:20:10,685 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:20:38] 2025-07-28 01:20:11,250 | INFO     | [data] copytool_out thread has finished
[2025-07-27 21:20:38] 2025-07-28 01:20:11,691 | INFO     | [job] queue monitor thread has finished
[2025-07-27 21:20:38] 2025-07-28 01:20:12,045 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 21:20:38] 2025-07-28 01:20:13,721 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139858182625088)>', '<ExcThread(monitor, started 139857531750144)>']
[2025-07-27 21:20:38] 2025-07-28 01:20:18,746 | INFO     | all workflow threads have been joined
[2025-07-27 21:20:38] 2025-07-28 01:20:18,747 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 21:20:38] 2025-07-28 01:20:18,747 | INFO     | traces error code: 0
[2025-07-27 21:20:38] 2025-07-28 01:20:18,747 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 21:20:38] 2025-07-28 01:20:37,698 | INFO     | PID=3055478 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 21:20:38] 2025-07-28 01:20:37,699 | INFO     | .. there are 16 such processes running
[2025-07-27 21:20:38] 2025-07-28 01:20:37,699 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 21:20:38] 2025-07-28 01:20:37,699 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 21:20:38] 2025-07-28 01:20:37,699 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 21:20:38] 2025-07-28 01:20:37,700 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 21:20:38] 2025-07-28 01:20:37,700 | INFO     | [monitor] control thread has ended
[2025-07-27 21:20:38] 2025-07-28 01:20:37,828 [wrapper] ==== pilot stdout END ====
[2025-07-27 21:20:38] 2025-07-28 01:20:37,834 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 21:20:38] 2025-07-28 01:20:37,838 [wrapper] pilotpid: 3055478
[2025-07-27 21:20:38] 2025-07-28 01:20:37,841 [wrapper] Pilot exit status: 0
[2025-07-27 21:20:38] 2025-07-28 01:20:37,857 [wrapper] pandaids: 6748134676
[2025-07-27 21:20:38] 2025-07-28 01:20:37,949 [wrapper] cleanup supervisor_pilot 3478586 3055479
[2025-07-27 21:20:38] 2025-07-28 01:20:37,954 [wrapper] Test setup, not cleaning
[2025-07-27 21:20:38] 2025-07-28 01:20:37,957 [wrapper] apfmon messages muted
[2025-07-27 21:20:38] 2025-07-28 01:20:37,962 [wrapper] ==== wrapper stdout END ====
[2025-07-27 21:20:38] 2025-07-28 01:20:37,966 [wrapper] ==== wrapper stderr END ====
[2025-07-27 21:20:38]  *** Error codes and diagnostics ***
[2025-07-27 21:20:38]     "exeErrorCode": 0,
[2025-07-27 21:20:38]     "exeErrorDiag": "",
[2025-07-27 21:20:38]     "pilotErrorCode": 0,
[2025-07-27 21:20:38]     "pilotErrorDiag": "",
[2025-07-27 21:20:38]  *** Listing of results directory ***
[2025-07-27 21:20:38] total 346592
[2025-07-27 21:20:38] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 16:58 pilot3.tar.gz
[2025-07-27 21:20:38] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 17:08 queuedata.json
[2025-07-27 21:20:38] -rwx------. 1 boincer umatlas     36292 Jul 27 17:08 runpilot2-wrapper.sh
[2025-07-27 21:20:38] -rw-r--r--. 1 boincer umatlas       100 Jul 27 19:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 21:20:38] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 19:46 run_atlas
[2025-07-27 21:20:38] -rw-r--r--. 1 boincer umatlas       105 Jul 27 19:46 job.xml
[2025-07-27 21:20:38] -rw-r--r--. 2 boincer umatlas 142358581 Jul 27 19:46 EVNT.45743347._002111.pool.root.1
[2025-07-27 21:20:38] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 19:46 start_atlas.sh
[2025-07-27 21:20:38] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 19:46 shared
[2025-07-27 21:20:38] -rw-r--r--. 2 boincer umatlas    542901 Jul 27 19:46 input.tar.gz
[2025-07-27 21:20:38] -rw-r--r--. 1 boincer umatlas         0 Jul 27 19:46 boinc_lockfile
[2025-07-27 21:20:38] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 19:46 pandaJob.out
[2025-07-27 21:20:38] -rw-------. 1 boincer umatlas    980125 Jul 27 19:46 agis_schedconf.cvmfs.json
[2025-07-27 21:20:38] -rw-------. 1 boincer umatlas   1593052 Jul 27 19:46 agis_ddmendpoints.agis.ALL.json
[2025-07-27 21:20:38] drwx------. 4 boincer umatlas      4096 Jul 27 19:46 pilot3
[2025-07-27 21:20:38] -rw-------. 1 boincer umatlas 206976442 Jul 27 21:19 HITS.45743349._055606.pool.root.1
[2025-07-27 21:20:38] -rw-r--r--. 1 boincer umatlas       529 Jul 27 21:19 boinc_task_state.xml
[2025-07-27 21:20:38] -rw-r--r--. 1 boincer umatlas      6943 Jul 27 21:19 init_data.xml
[2025-07-27 21:20:38] -rw-------. 1 boincer umatlas      1033 Jul 27 21:19 memory_monitor_summary.json
[2025-07-27 21:20:38] -rw-------. 1 boincer umatlas    307379 Jul 27 21:19 log.45743349._055606.job.log.tgz.1
[2025-07-27 21:20:38] -rw-------. 1 boincer umatlas      7772 Jul 27 21:20 heartbeat.json
[2025-07-27 21:20:38] -rw-r--r--. 1 boincer umatlas        27 Jul 27 21:20 wrapper_checkpoint.txt
[2025-07-27 21:20:38] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 21:20 boinc_mmap_file
[2025-07-27 21:20:38] -rw-------. 1 boincer umatlas        95 Jul 27 21:20 pilot_heartbeat.json
[2025-07-27 21:20:38] -rw-------. 1 boincer umatlas       823 Jul 27 21:20 pilotlog.txt
[2025-07-27 21:20:38] -rw-------. 1 boincer umatlas    538722 Jul 27 21:20 log.45743349._055606.job.log.1
[2025-07-27 21:20:38] -rw-------. 1 boincer umatlas       357 Jul 27 21:20 output.list
[2025-07-27 21:20:38] -rw-r--r--. 1 boincer umatlas       620 Jul 27 21:20 runtime_log
[2025-07-27 21:20:38] -rw-------. 1 boincer umatlas    870400 Jul 27 21:20 result.tar.gz
[2025-07-27 21:20:38] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 21:20 runtime_log.err
[2025-07-27 21:20:38] -rw-------. 1 boincer umatlas       653 Jul 27 21:20 FPDODm8mN07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmaSWLDm8Ujpdn.diag
[2025-07-27 21:20:38] -rw-r--r--. 1 boincer umatlas     21932 Jul 27 21:20 stderr.txt
[2025-07-27 21:20:38] HITS file was successfully produced:
[2025-07-27 21:20:38] -rw-------. 1 boincer umatlas 206976442 Jul 27 21:19 shared/HITS.pool.root.1
[2025-07-27 21:20:38]  *** Contents of shared directory: ***
[2025-07-27 21:20:38] total 342556
[2025-07-27 21:20:38] -rw-r--r--. 2 boincer umatlas 142358581 Jul 27 19:46 ATLAS.root_0
[2025-07-27 21:20:38] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 19:46 start_atlas.sh
[2025-07-27 21:20:38] -rw-r--r--. 2 boincer umatlas    542901 Jul 27 19:46 input.tar.gz
[2025-07-27 21:20:38] -rw-------. 1 boincer umatlas 206976442 Jul 27 21:19 HITS.pool.root.1
[2025-07-27 21:20:38] -rw-------. 1 boincer umatlas    870400 Jul 27 21:20 result.tar.gz
21:20:39 (3051837): run_atlas exited; CPU time 38204.753508
21:20:39 (3051837): called boinc_finish(0)

</stderr_txt>
]]>

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