Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:39:34 (434833): wrapper (7.7.26015): starting
19:39:34 (434833): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 19:39:34] Arguments: --nthreads 8
[2025-07-27 19:39:34] Threads: 8
[2025-07-27 19:39:34] Checking for CVMFS
[2025-07-27 19:39:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 19:39:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 19:39:34] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 19:39:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 19:39:35] 2.13.0.0 99742 27902 358608 148828 0 317 21546389 32935936 26976 16776704 1 253697877 99.626 280096057 20310 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 19:39:35] CVMFS is ok
[2025-07-27 19:39:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 19:39:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 19:39:35] Further information can be found at the LHC@home message board.
[2025-07-27 19:39:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 19:39:35] Checking for apptainer binary...
[2025-07-27 19:39:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 19:39:35] Running /usr/bin/apptainer --version
[2025-07-27 19:39:35] apptainer version 1.4.1-1.el9
[2025-07-27 19:39:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 19:39:35] c7-6-31.aglt2.org
[2025-07-27 19:39:35] apptainer works
[2025-07-27 19:39:35] Set ATHENA_PROC_NUMBER=8
[2025-07-27 19:39:35] Set ATHENA_CORE_NUMBER=8
[2025-07-27 19:39:35] Starting ATLAS job with PandaID=6747578766
[2025-07-27 19:39:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 21:16:07]  *** The last 200 lines of the pilot log: ***
[2025-07-27 21:16:07]  protocol_id=None
[2025-07-27 21:16:07]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 21:16:07]  replicas=None
[2025-07-27 21:16:07]  scope=mc23_13p6TeV
[2025-07-27 21:16:07]  status=None
[2025-07-27 21:16:07]  status_code=0
[2025-07-27 21:16:07]  storage_token=
[2025-07-27 21:16:07]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6747578766/log.45743349._053386.job.log.tgz.1
[2025-07-27 21:16:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e9/3a/log.45743349._053386.job.log.tgz.1
[2025-07-27 21:16:07]  workdir=None
[2025-07-27 21:16:07] ]
[2025-07-27 21:16:07] 2025-07-28 01:15:26,911 | INFO     | transferring file log.45743349._053386.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6747578766/log.45743349._053386.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 21:16:07] 2025-07-28 01:15:26,912 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6747578766/log.45743349._053386.job.log.tgz.1 /tmp/boinchome/slots/2/log.45743349._053386.job
[2025-07-27 21:16:07] 2025-07-28 01:15:26,984 | INFO     | adding to output.list: log.45743349._053386.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e9/3a/log.45743349._053386.job.log.tg
[2025-07-27 21:16:07] 2025-07-28 01:15:26,985 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 21:16:07] 2025-07-28 01:15:26,985 | INFO     | summary of transferred files:
[2025-07-27 21:16:07] 2025-07-28 01:15:26,985 | INFO     |  -- lfn=log.45743349._053386.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 21:16:07] 2025-07-28 01:15:26,985 | INFO     | stage-out finished correctly
[2025-07-27 21:16:07] 2025-07-28 01:15:27,483 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 21:16:07] 2025-07-28 01:15:27,995 | INFO     | job 6747578766 has state=finished
[2025-07-27 21:16:07] 2025-07-28 01:15:27,995 | INFO     | preparing for final server update for job 6747578766 in state='finished'
[2025-07-27 21:16:07] 2025-07-28 01:15:28,129 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-27 21:16:07] 2025-07-28 01:15:28,130 | INFO     | this job has now completed (state=finished)
[2025-07-27 21:16:07] 2025-07-28 01:15:28,130 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 21:16:07] 2025-07-28 01:15:28,130 | INFO     | log transfer has been attempted: DONE
[2025-07-27 21:16:07] 2025-07-28 01:15:28,130 | INFO     | job 6747578766 has finished - writing final server update
[2025-07-27 21:16:07] 2025-07-28 01:15:28,130 | INFO     | total number of processed events: 400 (read)
[2025-07-27 21:16:07] 2025-07-28 01:15:28,131 | INFO     | executing command: lscpu
[2025-07-27 21:16:07] 2025-07-28 01:15:28,223 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 21:16:07] 2025-07-28 01:15:32,478 | WARNING  | process 452273 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 21:16:07] 2025-07-28 01:15:32,478 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6747578766/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 21:16:07] 2025-07-28 01:15:33,015 | INFO     | number of running child processes to parent process 452273: 1
[2025-07-27 21:16:07] 2025-07-28 01:15:33,016 | INFO     | maximum number of monitored processes: 6
[2025-07-27 21:16:07] 2025-07-28 01:15:34,014 | INFO     | PID=442346 has CPU usage=15.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 21:16:07] 2025-07-28 01:15:34,014 | INFO     | .. there are 16 such processes running
[2025-07-27 21:16:07] 2025-07-28 01:15:34,764 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 21:16:07] 2025-07-28 01:15:34,789 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3234.505885416666
[2025-07-27 21:16:07] 2025-07-28 01:15:34,803 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6747578766/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 21:16:07] 2025-07-28 01:15:34,804 | INFO     | extracted standard info from prmon json
[2025-07-27 21:16:07] 2025-07-28 01:15:34,804 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 21:16:07] 2025-07-28 01:15:34,804 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 21:16:07] 2025-07-28 01:15:34,804 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 21:16:07] 2025-07-28 01:15:34,804 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 21:16:07] 2025-07-28 01:15:34,806 | INFO     | fitting pss+swap vs Time
[2025-07-27 21:16:07] 2025-07-28 01:15:34,806 | INFO     | sum of square deviations: 197196623.45348847
[2025-07-27 21:16:07] 2025-07-28 01:15:34,806 | INFO     | sum of deviations: -18661514279.674423
[2025-07-27 21:16:07] 2025-07-28 01:15:34,806 | INFO     | mean x: 1753662554.5232558
[2025-07-27 21:16:07] 2025-07-28 01:15:34,806 | INFO     | mean y: 2428484.8372093025
[2025-07-27 21:16:07] 2025-07-28 01:15:34,806 | INFO     | -- intersect: 165958610846.57498
[2025-07-27 21:16:07] 2025-07-28 01:15:34,806 | INFO     | intersect: 165958610846.57498
[2025-07-27 21:16:07] 2025-07-28 01:15:34,807 | INFO     | chi2: 0.1519130563306814
[2025-07-27 21:16:07] 2025-07-28 01:15:34,807 | INFO     | -- intersect: 165958610846.57498
[2025-07-27 21:16:07] 2025-07-28 01:15:34,807 | INFO     | current memory leak: -94.63 B/s (using 86 data points, chi2=0.15)
[2025-07-27 21:16:07] 2025-07-28 01:15:34,807 | INFO     | could have reported an average CPU frequency of 3160 MHz (7 samples)
[2025-07-27 21:16:07] 2025-07-28 01:15:34,807 | INFO     | ..............................
[2025-07-27 21:16:07] 2025-07-28 01:15:34,807 | INFO     | . Timing measurements:
[2025-07-27 21:16:07] 2025-07-28 01:15:34,807 | INFO     | . get job = 0 s
[2025-07-27 21:16:07] 2025-07-28 01:15:34,807 | INFO     | . initial setup = 2 s
[2025-07-27 21:16:07] 2025-07-28 01:15:34,807 | INFO     | . payload setup = 19 s
[2025-07-27 21:16:07] 2025-07-28 01:15:34,807 | INFO     | . stage-in = 0 s
[2025-07-27 21:16:07] 2025-07-28 01:15:34,807 | INFO     | . payload execution = 5680 s
[2025-07-27 21:16:07] 2025-07-28 01:15:34,807 | INFO     | . stage-out = 0 s
[2025-07-27 21:16:07] 2025-07-28 01:15:34,807 | INFO     | . log creation = 0 s
[2025-07-27 21:16:07] 2025-07-28 01:15:34,808 | INFO     | ..............................
[2025-07-27 21:16:07] 2025-07-28 01:15:34,883 | INFO     | 
[2025-07-27 21:16:07] 2025-07-28 01:15:34,883 | INFO     | job summary report
[2025-07-27 21:16:07] 2025-07-28 01:15:34,883 | INFO     | --------------------------------------------------
[2025-07-27 21:16:07] 2025-07-28 01:15:34,883 | INFO     | PanDA job id: 6747578766
[2025-07-27 21:16:07] 2025-07-28 01:15:34,883 | INFO     | task id: 45743349
[2025-07-27 21:16:07] 2025-07-28 01:15:34,883 | INFO     | errors: (none)
[2025-07-27 21:16:07] 2025-07-28 01:15:34,884 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 21:16:07] 2025-07-28 01:15:34,884 | INFO     | pilot state: finished 
[2025-07-27 21:16:07] 2025-07-28 01:15:34,884 | INFO     | transexitcode: 0
[2025-07-27 21:16:07] 2025-07-28 01:15:34,884 | INFO     | exeerrorcode: 0
[2025-07-27 21:16:07] 2025-07-28 01:15:34,884 | INFO     | exeerrordiag: 
[2025-07-27 21:16:07] 2025-07-28 01:15:34,884 | INFO     | exitcode: 0
[2025-07-27 21:16:07] 2025-07-28 01:15:34,884 | INFO     | exitmsg: OK
[2025-07-27 21:16:07] 2025-07-28 01:15:34,884 | INFO     | cpuconsumptiontime: 34104 s
[2025-07-27 21:16:07] 2025-07-28 01:15:34,884 | INFO     | nevents: 400
[2025-07-27 21:16:07] 2025-07-28 01:15:34,884 | INFO     | neventsw: 0
[2025-07-27 21:16:07] 2025-07-28 01:15:34,884 | INFO     | pid: 452273
[2025-07-27 21:16:07] 2025-07-28 01:15:34,884 | INFO     | pgrp: 452273
[2025-07-27 21:16:07] 2025-07-28 01:15:34,884 | INFO     | corecount: 8
[2025-07-27 21:16:07] 2025-07-28 01:15:34,884 | INFO     | event service: False
[2025-07-27 21:16:07] 2025-07-28 01:15:34,885 | INFO     | sizes: {0: 2397304, 1: 2397503, 10: 2397765, 11: 2397793, 5704: 2424452, 5706: 2433450, 5707: 2433634, 5714: 2433828}
[2025-07-27 21:16:07] 2025-07-28 01:15:34,885 | INFO     | --------------------------------------------------
[2025-07-27 21:16:07] 2025-07-28 01:15:34,885 | INFO     | 
[2025-07-27 21:16:07] 2025-07-28 01:15:34,885 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-27 21:16:07] 2025-07-28 01:15:34,908 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 21:16:07] 2025-07-28 01:15:34,909 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 21:16:07] 2025-07-28 01:15:34,909 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 21:16:07] 2025-07-28 01:15:34,909 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 21:16:07] 2025-07-28 01:15:34,909 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 21:16:07] 2025-07-28 01:15:34,909 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 21:16:07] 2025-07-28 01:15:34,909 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 21:16:07] 2025-07-28 01:15:34,909 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 21:16:07] 2025-07-28 01:15:34,909 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 21:16:07] 2025-07-28 01:15:34,909 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 21:16:07] 2025-07-28 01:15:34,910 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 21:16:07] 2025-07-28 01:15:34,910 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 21:16:07] 2025-07-28 01:15:34,910 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 21:16:07] 2025-07-28 01:15:34,910 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 21:16:07] 2025-07-28 01:15:34,910 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 21:16:07] 2025-07-28 01:15:34,910 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 21:16:07] 2025-07-28 01:15:34,910 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 21:16:07] 2025-07-28 01:15:34,910 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 21:16:07] 2025-07-28 01:15:34,910 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 21:16:07] 2025-07-28 01:15:34,910 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 21:16:07] 2025-07-28 01:15:34,910 | INFO     | job 6747578766 has completed (purged errors)
[2025-07-27 21:16:07] 2025-07-28 01:15:34,911 | INFO     | overall cleanup function is called
[2025-07-27 21:16:07] 2025-07-28 01:15:35,919 | INFO     | --- collectZombieJob: --- 10, [452273]
[2025-07-27 21:16:07] 2025-07-28 01:15:35,920 | INFO     | zombie collector waiting for pid 452273
[2025-07-27 21:16:07] 2025-07-28 01:15:35,920 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 21:16:07] 2025-07-28 01:15:35,920 | INFO     | collected zombie processes
[2025-07-27 21:16:07] 2025-07-28 01:15:35,920 | INFO     | will attempt to kill all subprocesses of pid=452273
[2025-07-27 21:16:07] 2025-07-28 01:15:36,399 | INFO     | process IDs to be killed: [452273] (in reverse order)
[2025-07-27 21:16:07] 2025-07-28 01:15:36,554 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 21:16:07] 2025-07-28 01:15:36,555 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 21:16:07] 2025-07-28 01:15:36,580 | INFO     | did not find any defunct processes belonging to 452273
[2025-07-27 21:16:07] 2025-07-28 01:15:36,600 | INFO     | did not find any defunct processes belonging to 452273
[2025-07-27 21:16:07] 2025-07-28 01:15:36,600 | INFO     | ready for new job
[2025-07-27 21:16:07] 2025-07-28 01:15:36,600 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 21:16:07] 2025-07-28 01:15:36,603 | INFO     | ***************************************
[2025-07-27 21:16:07] 2025-07-28 01:15:36,603 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 21:16:07] 2025-07-28 01:15:36,603 | INFO     | ***************************************
[2025-07-27 21:16:07] 2025-07-28 01:15:36,603 | INFO     | 
[2025-07-27 21:16:07] 2025-07-28 01:15:36,620 | INFO     | architecture information:
[2025-07-27 21:16:07] 2025-07-28 01:15:36,621 | INFO     | executing command: cat /etc/os-release
[2025-07-27 21:16:07] 2025-07-28 01:15:36,652 | INFO     | cat /etc/os-release:
[2025-07-27 21:16:07] NAME="CentOS Linux"
[2025-07-27 21:16:07] VERSION="7 (Core)"
[2025-07-27 21:16:07] ID="centos"
[2025-07-27 21:16:07] ID_LIKE="rhel fedora"
[2025-07-27 21:16:07] VERSION_ID="7"
[2025-07-27 21:16:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 21:16:07] ANSI_COLOR="0;31"
[2025-07-27 21:16:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 21:16:07] HOME_URL="https://www.centos.org/"
[2025-07-27 21:16:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 21:16:07] 
[2025-07-27 21:16:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 21:16:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 21:16:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 21:16:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 21:16:07] 
[2025-07-27 21:16:07] 2025-07-28 01:15:36,653 | INFO     | ***************************************
[2025-07-27 21:16:07] 2025-07-28 01:15:37,164 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-27 21:16:07] 2025-07-28 01:15:37,201 | INFO     | sufficient remaining disk space (75850842112 B)
[2025-07-27 21:16:07] 2025-07-28 01:15:37,202 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 21:16:07] 2025-07-28 01:15:37,202 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 21:16:07] 2025-07-28 01:15:37,202 | INFO     | update_server=False
[2025-07-27 21:16:07] 2025-07-28 01:15:37,202 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 21:16:07] 2025-07-28 01:15:37,202 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:16:07] 2025-07-28 01:15:37,202 | INFO     | aborting loop
[2025-07-27 21:16:07] 2025-07-28 01:15:37,610 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 21:16:07] 2025-07-28 01:15:37,886 | INFO     | all data control threads have been joined
[2025-07-27 21:16:07] 2025-07-28 01:15:38,132 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 21:16:07] 2025-07-28 01:15:38,208 | INFO     | [job] retrieve thread has finished
[2025-07-27 21:16:07] 2025-07-28 01:15:38,217 | INFO     | [job] job monitor thread has finished
[2025-07-27 21:16:07] 2025-07-28 01:15:38,475 | INFO     | [data] copytool_in thread has finished
[2025-07-27 21:16:07] 2025-07-28 01:15:38,501 | INFO     | all payload control threads have been joined
[2025-07-27 21:16:07] 2025-07-28 01:15:38,516 | INFO     | all job control threads have been joined
[2025-07-27 21:16:07] 2025-07-28 01:15:38,636 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 21:16:07] 2025-07-28 01:15:38,801 | INFO     | [job] validate thread has finished
[2025-07-27 21:16:07] 2025-07-28 01:15:38,862 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 21:16:07] 2025-07-28 01:15:38,893 | INFO     | [data] control thread has finished
[2025-07-27 21:16:07] 2025-07-28 01:15:39,173 | INFO     | [payload] validate_post thread has finished
[2025-07-27 21:16:07] 2025-07-28 01:15:39,290 | INFO     | [payload] failed_post thread has finished
[2025-07-27 21:16:07] 2025-07-28 01:15:39,507 | INFO     | [payload] control thread has finished
[2025-07-27 21:16:07] 2025-07-28 01:15:39,525 | INFO     | [job] control thread has finished
[2025-07-27 21:16:07] 2025-07-28 01:15:39,619 | INFO     | [data] copytool_out thread has finished
[2025-07-27 21:16:07] 2025-07-28 01:15:39,711 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 21:16:07] 2025-07-28 01:15:39,897 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:16:07] 2025-07-28 01:15:40,903 | INFO     | [job] queue monitor thread has finished
[2025-07-27 21:16:07] 2025-07-28 01:15:42,150 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 21:16:07] 2025-07-28 01:15:47,724 | INFO     | job.realtimelogging is not enabled
[2025-07-27 21:16:07] 2025-07-28 01:15:48,737 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 21:16:07] 2025-07-28 01:15:49,529 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140038818350912)>', '<ExcThread(monitor, started 140038306244352)>']
[2025-07-27 21:16:07] 2025-07-28 01:15:54,554 | INFO     | all workflow threads have been joined
[2025-07-27 21:16:07] 2025-07-28 01:15:54,555 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 21:16:07] 2025-07-28 01:15:54,555 | INFO     | traces error code: 0
[2025-07-27 21:16:07] 2025-07-28 01:15:54,555 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 21:16:07] 2025-07-28 01:16:06,710 | INFO     | PID=442346 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 21:16:07] 2025-07-28 01:16:06,710 | INFO     | .. there are 16 such processes running
[2025-07-27 21:16:07] 2025-07-28 01:16:06,710 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 21:16:07] 2025-07-28 01:16:06,710 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 21:16:07] 2025-07-28 01:16:06,711 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 21:16:07] 2025-07-28 01:16:06,711 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 21:16:07] 2025-07-28 01:16:06,711 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 21:16:07] 2025-07-28 01:16:06,711 | INFO     | [monitor] control thread has ended
[2025-07-27 21:16:07] 2025-07-28 01:16:06,842 [wrapper] ==== pilot stdout END ====
[2025-07-27 21:16:07] 2025-07-28 01:16:06,852 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 21:16:07] 2025-07-28 01:16:06,861 [wrapper] pilotpid: 442346
[2025-07-27 21:16:07] 2025-07-28 01:16:06,865 [wrapper] Pilot exit status: 0
[2025-07-27 21:16:07] 2025-07-28 01:16:06,886 [wrapper] pandaids: 6747578766
[2025-07-27 21:16:07] 2025-07-28 01:16:07,010 [wrapper] cleanup supervisor_pilot 1620738 442347
[2025-07-27 21:16:07] 2025-07-28 01:16:07,016 [wrapper] Test setup, not cleaning
[2025-07-27 21:16:07] 2025-07-28 01:16:07,019 [wrapper] apfmon messages muted
[2025-07-27 21:16:07] 2025-07-28 01:16:07,022 [wrapper] ==== wrapper stdout END ====
[2025-07-27 21:16:07] 2025-07-28 01:16:07,024 [wrapper] ==== wrapper stderr END ====
[2025-07-27 21:16:07]  *** Error codes and diagnostics ***
[2025-07-27 21:16:07]     "exeErrorCode": 0,
[2025-07-27 21:16:07]     "exeErrorDiag": "",
[2025-07-27 21:16:07]     "pilotErrorCode": 0,
[2025-07-27 21:16:07]     "pilotErrorDiag": "",
[2025-07-27 21:16:07]  *** Listing of results directory ***
[2025-07-27 21:16:07] total 383104
[2025-07-27 21:16:07] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 13:39 pilot3.tar.gz
[2025-07-27 21:16:07] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 14:02 queuedata.json
[2025-07-27 21:16:07] -rwx------. 1 boincer umatlas     36292 Jul 27 14:03 runpilot2-wrapper.sh
[2025-07-27 21:16:07] -rw-r--r--. 1 boincer umatlas       100 Jul 27 19:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 21:16:07] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 19:39 run_atlas
[2025-07-27 21:16:07] -rw-r--r--. 1 boincer umatlas       105 Jul 27 19:39 job.xml
[2025-07-27 21:16:07] -rw-r--r--. 2 boincer umatlas 187207278 Jul 27 19:39 EVNT.45743347._002921.pool.root.1
[2025-07-27 21:16:07] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 19:39 start_atlas.sh
[2025-07-27 21:16:07] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 19:39 shared
[2025-07-27 21:16:07] -rw-r--r--. 2 boincer umatlas    542896 Jul 27 19:39 input.tar.gz
[2025-07-27 21:16:07] -rw-r--r--. 1 boincer umatlas         0 Jul 27 19:39 boinc_lockfile
[2025-07-27 21:16:07] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 19:39 pandaJob.out
[2025-07-27 21:16:07] -rw-------. 1 boincer umatlas    980125 Jul 27 19:39 agis_schedconf.cvmfs.json
[2025-07-27 21:16:07] -rw-------. 1 boincer umatlas   1593052 Jul 27 19:39 agis_ddmendpoints.agis.ALL.json
[2025-07-27 21:16:07] drwx------. 4 boincer umatlas      4096 Jul 27 19:39 pilot3
[2025-07-27 21:16:07] -rw-r--r--. 1 boincer umatlas      6932 Jul 27 21:13 init_data.xml
[2025-07-27 21:16:07] -rw-------. 1 boincer umatlas 199496425 Jul 27 21:14 HITS.45743349._053386.pool.root.1
[2025-07-27 21:16:07] -rw-r--r--. 1 boincer umatlas       529 Jul 27 21:14 boinc_task_state.xml
[2025-07-27 21:16:07] -rw-------. 1 boincer umatlas      1030 Jul 27 21:15 memory_monitor_summary.json
[2025-07-27 21:16:07] -rw-------. 1 boincer umatlas    324388 Jul 27 21:15 log.45743349._053386.job.log.tgz.1
[2025-07-27 21:16:07] -rw-------. 1 boincer umatlas        95 Jul 27 21:15 pilot_heartbeat.json
[2025-07-27 21:16:07] -rw-------. 1 boincer umatlas      7776 Jul 27 21:15 heartbeat.json
[2025-07-27 21:16:07] -rw-r--r--. 1 boincer umatlas        27 Jul 27 21:16 wrapper_checkpoint.txt
[2025-07-27 21:16:07] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 21:16 boinc_mmap_file
[2025-07-27 21:16:07] -rw-------. 1 boincer umatlas       892 Jul 27 21:16 pilotlog.txt
[2025-07-27 21:16:07] -rw-------. 1 boincer umatlas    535537 Jul 27 21:16 log.45743349._053386.job.log.1
[2025-07-27 21:16:07] -rw-------. 1 boincer umatlas       357 Jul 27 21:16 output.list
[2025-07-27 21:16:07] -rw-r--r--. 1 boincer umatlas       620 Jul 27 21:16 runtime_log
[2025-07-27 21:16:07] -rw-------. 1 boincer umatlas    880640 Jul 27 21:16 result.tar.gz
[2025-07-27 21:16:07] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 21:16 runtime_log.err
[2025-07-27 21:16:07] -rw-------. 1 boincer umatlas       654 Jul 27 21:16 79LODmptK07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmF2VLDm2VYidm.diag
[2025-07-27 21:16:07] -rw-r--r--. 1 boincer umatlas     21864 Jul 27 21:16 stderr.txt
[2025-07-27 21:16:07] HITS file was successfully produced:
[2025-07-27 21:16:07] -rw-------. 1 boincer umatlas 199496425 Jul 27 21:14 shared/HITS.pool.root.1
[2025-07-27 21:16:07]  *** Contents of shared directory: ***
[2025-07-27 21:16:07] total 379056
[2025-07-27 21:16:07] -rw-r--r--. 2 boincer umatlas 187207278 Jul 27 19:39 ATLAS.root_0
[2025-07-27 21:16:07] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 19:39 start_atlas.sh
[2025-07-27 21:16:07] -rw-r--r--. 2 boincer umatlas    542896 Jul 27 19:39 input.tar.gz
[2025-07-27 21:16:07] -rw-------. 1 boincer umatlas 199496425 Jul 27 21:14 HITS.pool.root.1
[2025-07-27 21:16:07] -rw-------. 1 boincer umatlas    880640 Jul 27 21:16 result.tar.gz
21:16:08 (434833): run_atlas exited; CPU time 34314.902860
21:16:08 (434833): called boinc_finish(0)

</stderr_txt>
]]>

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