Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:50:53 (45832): wrapper (7.7.26015): starting
20:50:53 (45832): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 20:50:53] Arguments: --nthreads 12
[2025-07-27 20:50:53] Threads: 12
[2025-07-27 20:50:53] Checking for CVMFS
[2025-07-27 20:50:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 20:50:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 20:50:53] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 20:50:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 20:50:53] 2.12.6.0 2794239 19108 331220 148829 0 576 33754388 40960001 8841 16776704 1 46446145 99.770 47105061 23432 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 20:50:53] CVMFS is ok
[2025-07-27 20:50:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 20:50:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 20:50:53] Further information can be found at the LHC@home message board.
[2025-07-27 20:50:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 20:50:53] Checking for apptainer binary...
[2025-07-27 20:50:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 20:50:53] Running /usr/bin/apptainer --version
[2025-07-27 20:50:53] apptainer version 1.4.1-1.el9
[2025-07-27 20:50:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 20:50:54] c6-8-12-4.aglt2.org
[2025-07-27 20:50:54] apptainer works
[2025-07-27 20:50:54] Set ATHENA_PROC_NUMBER=12
[2025-07-27 20:50:54] Set ATHENA_CORE_NUMBER=12
[2025-07-27 20:50:54] Starting ATLAS job with PandaID=6747412957
[2025-07-27 20:50:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 22:02:48]  *** The last 200 lines of the pilot log: ***
[2025-07-27 22:02:48]  protocol_id=None
[2025-07-27 22:02:48]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 22:02:48]  replicas=None
[2025-07-27 22:02:48]  scope=mc23_13p6TeV
[2025-07-27 22:02:48]  status=None
[2025-07-27 22:02:48]  status_code=0
[2025-07-27 22:02:48]  storage_token=
[2025-07-27 22:02:48]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747412957/log.45743349._049840.job.log.tgz.1
[2025-07-27 22:02:48]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d0/e4/log.45743349._049840.job.log.tgz.1
[2025-07-27 22:02:48]  workdir=None
[2025-07-27 22:02:48] ]
[2025-07-27 22:02:48] 2025-07-28 02:02:06,852 | INFO     | transferring file log.45743349._049840.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747412957/log.45743349._049840.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 22:02:48] 2025-07-28 02:02:06,852 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747412957/log.45743349._049840.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._049840.job
[2025-07-27 22:02:48] 2025-07-28 02:02:06,871 | INFO     | adding to output.list: log.45743349._049840.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d0/e4/log.45743349._049840.job.log.tg
[2025-07-27 22:02:48] 2025-07-28 02:02:06,872 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 22:02:48] 2025-07-28 02:02:06,873 | INFO     | summary of transferred files:
[2025-07-27 22:02:48] 2025-07-28 02:02:06,873 | INFO     |  -- lfn=log.45743349._049840.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 22:02:48] 2025-07-28 02:02:06,873 | INFO     | stage-out finished correctly
[2025-07-27 22:02:48] 2025-07-28 02:02:06,976 | INFO     | monitor loop #319: job 0:6747412957 is in state 'finished'
[2025-07-27 22:02:48] 2025-07-28 02:02:06,976 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 22:02:48] 2025-07-28 02:02:09,054 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 22:02:48] 2025-07-28 02:02:09,479 | INFO     | monitor loop #320: job 0:6747412957 is in state 'finished'
[2025-07-27 22:02:48] 2025-07-28 02:02:09,479 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 22:02:48] 2025-07-28 02:02:11,137 | INFO     | job 6747412957 has state=finished
[2025-07-27 22:02:48] 2025-07-28 02:02:11,137 | INFO     | preparing for final server update for job 6747412957 in state='finished'
[2025-07-27 22:02:48] 2025-07-28 02:02:11,137 | INFO     | this job has now completed (state=finished)
[2025-07-27 22:02:48] 2025-07-28 02:02:11,137 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 22:02:48] 2025-07-28 02:02:11,138 | INFO     | log transfer has been attempted: DONE
[2025-07-27 22:02:48] 2025-07-28 02:02:11,138 | INFO     | job 6747412957 has finished - writing final server update
[2025-07-27 22:02:48] 2025-07-28 02:02:11,138 | INFO     | total number of processed events: 400 (read)
[2025-07-27 22:02:48] 2025-07-28 02:02:11,139 | INFO     | executing command: lscpu
[2025-07-27 22:02:48] 2025-07-28 02:02:11,195 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 22:02:48] 2025-07-28 02:02:11,982 | INFO     | monitor loop #321: job 0:6747412957 is in state 'finished'
[2025-07-27 22:02:48] 2025-07-28 02:02:11,982 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 22:02:48] 2025-07-28 02:02:14,486 | INFO     | monitor loop #322: job 0:6747412957 is in state 'finished'
[2025-07-27 22:02:48] 2025-07-28 02:02:14,486 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 22:02:48] 2025-07-28 02:02:15,738 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 22:02:48] 2025-07-28 02:02:15,747 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3013.906982142856
[2025-07-27 22:02:48] 2025-07-28 02:02:15,757 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747412957/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 22:02:48] 2025-07-28 02:02:15,758 | INFO     | extracted standard info from prmon json
[2025-07-27 22:02:48] 2025-07-28 02:02:15,758 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 22:02:48] 2025-07-28 02:02:15,758 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 22:02:48] 2025-07-28 02:02:15,759 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 22:02:48] 2025-07-28 02:02:15,759 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 22:02:48] 2025-07-28 02:02:15,761 | INFO     | fitting pss+swap vs Time
[2025-07-27 22:02:48] 2025-07-28 02:02:15,761 | INFO     | sum of square deviations: 77515872.0
[2025-07-27 22:02:48] 2025-07-28 02:02:15,762 | INFO     | sum of deviations: -10202948694.0
[2025-07-27 22:02:48] 2025-07-28 02:02:15,762 | INFO     | mean x: 1753666090.0
[2025-07-27 22:02:48] 2025-07-28 02:02:15,762 | INFO     | mean y: 2538883.8412698414
[2025-07-27 22:02:48] 2025-07-28 02:02:15,762 | INFO     | -- intersect: 230827074311.5997
[2025-07-27 22:02:48] 2025-07-28 02:02:15,762 | INFO     | intersect: 230827074311.5997
[2025-07-27 22:02:48] 2025-07-28 02:02:15,762 | INFO     | chi2: 0.13438645565264673
[2025-07-27 22:02:48] 2025-07-28 02:02:15,762 | INFO     | -- intersect: 230827074311.5997
[2025-07-27 22:02:48] 2025-07-28 02:02:15,762 | INFO     | current memory leak: -131.62 B/s (using 63 data points, chi2=0.13)
[2025-07-27 22:02:48] 2025-07-28 02:02:15,763 | INFO     | could have reported an average CPU frequency of 3006 MHz (6 samples)
[2025-07-27 22:02:48] 2025-07-28 02:02:15,763 | INFO     | ..............................
[2025-07-27 22:02:48] 2025-07-28 02:02:15,763 | INFO     | . Timing measurements:
[2025-07-27 22:02:48] 2025-07-28 02:02:15,763 | INFO     | . get job = 0 s
[2025-07-27 22:02:48] 2025-07-28 02:02:15,763 | INFO     | . initial setup = 2 s
[2025-07-27 22:02:48] 2025-07-28 02:02:15,763 | INFO     | . payload setup = 7 s
[2025-07-27 22:02:48] 2025-07-28 02:02:15,763 | INFO     | . stage-in = 0 s
[2025-07-27 22:02:48] 2025-07-28 02:02:15,763 | INFO     | . payload execution = 4233 s
[2025-07-27 22:02:48] 2025-07-28 02:02:15,763 | INFO     | . stage-out = 0 s
[2025-07-27 22:02:48] 2025-07-28 02:02:15,763 | INFO     | . log creation = 0 s
[2025-07-27 22:02:48] 2025-07-28 02:02:15,763 | INFO     | ..............................
[2025-07-27 22:02:48] 2025-07-28 02:02:15,934 | INFO     | 
[2025-07-27 22:02:48] 2025-07-28 02:02:15,935 | INFO     | job summary report
[2025-07-27 22:02:48] 2025-07-28 02:02:15,935 | INFO     | --------------------------------------------------
[2025-07-27 22:02:48] 2025-07-28 02:02:15,935 | INFO     | PanDA job id: 6747412957
[2025-07-27 22:02:48] 2025-07-28 02:02:15,935 | INFO     | task id: 45743349
[2025-07-27 22:02:48] 2025-07-28 02:02:15,935 | INFO     | errors: (none)
[2025-07-27 22:02:48] 2025-07-28 02:02:15,935 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 22:02:48] 2025-07-28 02:02:15,935 | INFO     | pilot state: finished 
[2025-07-27 22:02:48] 2025-07-28 02:02:15,935 | INFO     | transexitcode: 0
[2025-07-27 22:02:48] 2025-07-28 02:02:15,935 | INFO     | exeerrorcode: 0
[2025-07-27 22:02:48] 2025-07-28 02:02:15,935 | INFO     | exeerrordiag: 
[2025-07-27 22:02:48] 2025-07-28 02:02:15,936 | INFO     | exitcode: 0
[2025-07-27 22:02:48] 2025-07-28 02:02:15,936 | INFO     | exitmsg: OK
[2025-07-27 22:02:48] 2025-07-28 02:02:15,936 | INFO     | cpuconsumptiontime: 45182 s
[2025-07-27 22:02:48] 2025-07-28 02:02:15,936 | INFO     | nevents: 400
[2025-07-27 22:02:48] 2025-07-28 02:02:15,936 | INFO     | neventsw: 0
[2025-07-27 22:02:48] 2025-07-28 02:02:15,936 | INFO     | pid: 62265
[2025-07-27 22:02:48] 2025-07-28 02:02:15,936 | INFO     | pgrp: 62265
[2025-07-27 22:02:48] 2025-07-28 02:02:15,936 | INFO     | corecount: 12
[2025-07-27 22:02:48] 2025-07-28 02:02:15,936 | INFO     | event service: False
[2025-07-27 22:02:48] 2025-07-28 02:02:15,936 | INFO     | sizes: {0: 2397475, 5: 2397737, 11: 2397793, 4245: 2423662, 4246: 2432660, 4248: 2432716, 4255: 2433038}
[2025-07-27 22:02:48] 2025-07-28 02:02:15,936 | INFO     | --------------------------------------------------
[2025-07-27 22:02:48] 2025-07-28 02:02:15,936 | INFO     | 
[2025-07-27 22:02:48] 2025-07-28 02:02:15,936 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 22:02:48] 2025-07-28 02:02:15,954 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 22:02:48] 2025-07-28 02:02:15,955 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 22:02:48] 2025-07-28 02:02:15,955 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 22:02:48] 2025-07-28 02:02:15,955 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 22:02:48] 2025-07-28 02:02:15,955 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 22:02:48] 2025-07-28 02:02:15,955 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 22:02:48] 2025-07-28 02:02:15,955 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 22:02:48] 2025-07-28 02:02:15,955 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 22:02:48] 2025-07-28 02:02:15,955 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 22:02:48] 2025-07-28 02:02:15,955 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 22:02:48] 2025-07-28 02:02:15,955 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 22:02:48] 2025-07-28 02:02:15,956 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 22:02:48] 2025-07-28 02:02:15,956 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 22:02:48] 2025-07-28 02:02:15,956 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 22:02:48] 2025-07-28 02:02:15,956 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 22:02:48] 2025-07-28 02:02:15,956 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 22:02:48] 2025-07-28 02:02:15,956 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 22:02:48] 2025-07-28 02:02:15,956 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 22:02:48] 2025-07-28 02:02:15,956 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 22:02:48] 2025-07-28 02:02:15,956 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 22:02:48] 2025-07-28 02:02:15,956 | INFO     | job 6747412957 has completed (purged errors)
[2025-07-27 22:02:48] 2025-07-28 02:02:15,957 | INFO     | overall cleanup function is called
[2025-07-27 22:02:48] 2025-07-28 02:02:16,964 | INFO     | --- collectZombieJob: --- 10, [62265]
[2025-07-27 22:02:48] 2025-07-28 02:02:16,965 | INFO     | zombie collector waiting for pid 62265
[2025-07-27 22:02:48] 2025-07-28 02:02:16,965 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 22:02:48] 2025-07-28 02:02:16,965 | INFO     | collected zombie processes
[2025-07-27 22:02:48] 2025-07-28 02:02:16,965 | INFO     | will attempt to kill all subprocesses of pid=62265
[2025-07-27 22:02:48] 2025-07-28 02:02:17,208 | INFO     | process IDs to be killed: [62265] (in reverse order)
[2025-07-27 22:02:48] 2025-07-28 02:02:17,299 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 22:02:48] 2025-07-28 02:02:17,299 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 22:02:48] 2025-07-28 02:02:17,310 | INFO     | did not find any defunct processes belonging to 62265
[2025-07-27 22:02:48] 2025-07-28 02:02:17,320 | INFO     | did not find any defunct processes belonging to 62265
[2025-07-27 22:02:48] 2025-07-28 02:02:17,321 | INFO     | ready for new job
[2025-07-27 22:02:48] 2025-07-28 02:02:17,321 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 22:02:48] 2025-07-28 02:02:17,322 | INFO     | ***************************************
[2025-07-27 22:02:48] 2025-07-28 02:02:17,322 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 22:02:48] 2025-07-28 02:02:17,322 | INFO     | ***************************************
[2025-07-27 22:02:48] 2025-07-28 02:02:17,322 | INFO     | 
[2025-07-27 22:02:48] 2025-07-28 02:02:17,337 | INFO     | architecture information:
[2025-07-27 22:02:48] 2025-07-28 02:02:17,338 | INFO     | executing command: cat /etc/os-release
[2025-07-27 22:02:48] 2025-07-28 02:02:17,353 | INFO     | cat /etc/os-release:
[2025-07-27 22:02:48] NAME="CentOS Linux"
[2025-07-27 22:02:48] VERSION="7 (Core)"
[2025-07-27 22:02:48] ID="centos"
[2025-07-27 22:02:48] ID_LIKE="rhel fedora"
[2025-07-27 22:02:48] VERSION_ID="7"
[2025-07-27 22:02:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 22:02:48] ANSI_COLOR="0;31"
[2025-07-27 22:02:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 22:02:48] HOME_URL="https://www.centos.org/"
[2025-07-27 22:02:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 22:02:48] 
[2025-07-27 22:02:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 22:02:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 22:02:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 22:02:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 22:02:48] 
[2025-07-27 22:02:48] 2025-07-28 02:02:17,353 | INFO     | ***************************************
[2025-07-27 22:02:48] 2025-07-28 02:02:17,856 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 22:02:48] 2025-07-28 02:02:17,874 | INFO     | sufficient remaining disk space (56289656832 B)
[2025-07-27 22:02:48] 2025-07-28 02:02:17,874 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 22:02:48] 2025-07-28 02:02:17,875 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 22:02:48] 2025-07-28 02:02:17,875 | INFO     | update_server=False
[2025-07-27 22:02:48] 2025-07-28 02:02:17,875 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 22:02:48] 2025-07-28 02:02:17,875 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 22:02:48] 2025-07-28 02:02:17,884 | INFO     | all data control threads have been joined
[2025-07-27 22:02:48] 2025-07-28 02:02:17,994 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 22:02:48] 2025-07-28 02:02:17,995 | INFO     | aborting loop
[2025-07-27 22:02:48] 2025-07-28 02:02:18,084 | INFO     | all payload control threads have been joined
[2025-07-27 22:02:48] 2025-07-28 02:02:18,880 | INFO     | [job] retrieve thread has finished
[2025-07-27 22:02:48] 2025-07-28 02:02:18,890 | INFO     | [data] control thread has finished
[2025-07-27 22:02:48] 2025-07-28 02:02:18,994 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 22:02:48] 2025-07-28 02:02:18,999 | INFO     | [job] job monitor thread has finished
[2025-07-27 22:02:48] 2025-07-28 02:02:19,089 | INFO     | [payload] control thread has finished
[2025-07-27 22:02:48] 2025-07-28 02:02:19,158 | INFO     | [data] copytool_in thread has finished
[2025-07-27 22:02:48] 2025-07-28 02:02:19,240 | INFO     | [payload] failed_post thread has finished
[2025-07-27 22:02:48] 2025-07-28 02:02:19,281 | INFO     | all job control threads have been joined
[2025-07-27 22:02:48] 2025-07-28 02:02:19,652 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 22:02:48] 2025-07-28 02:02:19,879 | INFO     | [payload] validate_post thread has finished
[2025-07-27 22:02:48] 2025-07-28 02:02:19,880 | INFO     | [data] copytool_out thread has finished
[2025-07-27 22:02:48] 2025-07-28 02:02:20,138 | INFO     | [job] validate thread has finished
[2025-07-27 22:02:48] 2025-07-28 02:02:20,227 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 22:02:48] 2025-07-28 02:02:20,279 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 22:02:48] 2025-07-28 02:02:20,285 | INFO     | [job] control thread has finished
[2025-07-27 22:02:48] 2025-07-28 02:02:20,866 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 22:02:48] 2025-07-28 02:02:21,871 | INFO     | [job] queue monitor thread has finished
[2025-07-27 22:02:48] 2025-07-28 02:02:23,657 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 22:02:48] 2025-07-28 02:02:28,391 | INFO     | job.realtimelogging is not enabled
[2025-07-27 22:02:48] 2025-07-28 02:02:29,396 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 22:02:48] 2025-07-28 02:02:30,110 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140366219429696)>', '<ExcThread(monitor, started 140365503919872)>']
[2025-07-27 22:02:48] 2025-07-28 02:02:35,135 | INFO     | all workflow threads have been joined
[2025-07-27 22:02:48] 2025-07-28 02:02:35,136 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 22:02:48] 2025-07-28 02:02:35,136 | INFO     | traces error code: 0
[2025-07-27 22:02:48] 2025-07-28 02:02:35,136 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 22:02:48] 2025-07-28 02:02:48,389 | INFO     | PID=50286 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 22:02:48] 2025-07-28 02:02:48,391 | INFO     | .. there are 12 such processes running
[2025-07-27 22:02:48] 2025-07-28 02:02:48,394 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 22:02:48] 2025-07-28 02:02:48,394 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 22:02:48] 2025-07-28 02:02:48,394 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 22:02:48] 2025-07-28 02:02:48,394 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 22:02:48] 2025-07-28 02:02:48,394 | INFO     | [monitor] control thread has ended
[2025-07-27 22:02:48] 2025-07-28 02:02:48,567 [wrapper] ==== pilot stdout END ====
[2025-07-27 22:02:48] 2025-07-28 02:02:48,570 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 22:02:48] 2025-07-28 02:02:48,573 [wrapper] pilotpid: 50286
[2025-07-27 22:02:48] 2025-07-28 02:02:48,576 [wrapper] Pilot exit status: 0
[2025-07-27 22:02:48] 2025-07-28 02:02:48,586 [wrapper] pandaids: 6747412957
[2025-07-27 22:02:48] 2025-07-28 02:02:48,644 [wrapper] cleanup supervisor_pilot  203493 50287
[2025-07-27 22:02:48] 2025-07-28 02:02:48,646 [wrapper] Test setup, not cleaning
[2025-07-27 22:02:48] 2025-07-28 02:02:48,649 [wrapper] apfmon messages muted
[2025-07-27 22:02:48] 2025-07-28 02:02:48,651 [wrapper] ==== wrapper stdout END ====
[2025-07-27 22:02:48] 2025-07-28 02:02:48,654 [wrapper] ==== wrapper stderr END ====
[2025-07-27 22:02:48]  *** Error codes and diagnostics ***
[2025-07-27 22:02:48]     "exeErrorCode": 0,
[2025-07-27 22:02:48]     "exeErrorDiag": "",
[2025-07-27 22:02:48]     "pilotErrorCode": 0,
[2025-07-27 22:02:48]     "pilotErrorDiag": "",
[2025-07-27 22:02:48]  *** Listing of results directory ***
[2025-07-27 22:02:48] total 394424
[2025-07-27 22:02:48] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 10:11 pilot3.tar.gz
[2025-07-27 22:02:48] -rwx------. 1 boincer umatlas     36292 Jul 27 10:18 runpilot2-wrapper.sh
[2025-07-27 22:02:48] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 10:18 queuedata.json
[2025-07-27 22:02:48] -rw-r--r--. 1 boincer umatlas       100 Jul 27 20:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 22:02:48] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 20:50 run_atlas
[2025-07-27 22:02:48] -rw-r--r--. 1 boincer umatlas       105 Jul 27 20:50 job.xml
[2025-07-27 22:02:48] -rw-r--r--. 2 boincer umatlas 188449772 Jul 27 20:50 EVNT.45743347._002769.pool.root.1
[2025-07-27 22:02:48] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 20:50 start_atlas.sh
[2025-07-27 22:02:48] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 20:50 shared
[2025-07-27 22:02:48] -rw-r--r--. 2 boincer umatlas    542892 Jul 27 20:50 input.tar.gz
[2025-07-27 22:02:48] -rw-r--r--. 1 boincer umatlas         0 Jul 27 20:50 boinc_lockfile
[2025-07-27 22:02:48] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 20:50 pandaJob.out
[2025-07-27 22:02:48] -rw-------. 1 boincer umatlas    980125 Jul 27 20:51 agis_schedconf.cvmfs.json
[2025-07-27 22:02:48] -rw-------. 1 boincer umatlas   1593052 Jul 27 20:51 agis_ddmendpoints.agis.ALL.json
[2025-07-27 22:02:48] drwx------. 4 boincer umatlas      4096 Jul 27 20:51 pilot3
[2025-07-27 22:02:48] -rw-r--r--. 1 boincer umatlas      6839 Jul 27 22:01 init_data.xml
[2025-07-27 22:02:48] -rw-------. 1 boincer umatlas 209967609 Jul 27 22:01 HITS.45743349._049840.pool.root.1
[2025-07-27 22:02:48] -rw-r--r--. 1 boincer umatlas       529 Jul 27 22:01 boinc_task_state.xml
[2025-07-27 22:02:48] -rw-------. 1 boincer umatlas      1035 Jul 27 22:02 memory_monitor_summary.json
[2025-07-27 22:02:48] -rw-------. 1 boincer umatlas    369300 Jul 27 22:02 log.45743349._049840.job.log.tgz.1
[2025-07-27 22:02:48] -rw-------. 1 boincer umatlas      7821 Jul 27 22:02 heartbeat.json
[2025-07-27 22:02:48] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 22:02 boinc_mmap_file
[2025-07-27 22:02:48] -rw-r--r--. 1 boincer umatlas        27 Jul 27 22:02 wrapper_checkpoint.txt
[2025-07-27 22:02:48] -rw-------. 1 boincer umatlas        95 Jul 27 22:02 pilot_heartbeat.json
[2025-07-27 22:02:48] -rw-------. 1 boincer umatlas       821 Jul 27 22:02 pilotlog.txt
[2025-07-27 22:02:48] -rw-------. 1 boincer umatlas    428779 Jul 27 22:02 log.45743349._049840.job.log.1
[2025-07-27 22:02:48] -rw-------. 1 boincer umatlas       357 Jul 27 22:02 output.list
[2025-07-27 22:02:48] -rw-r--r--. 1 boincer umatlas       620 Jul 27 22:02 runtime_log
[2025-07-27 22:02:48] -rw-------. 1 boincer umatlas    819200 Jul 27 22:02 result.tar.gz
[2025-07-27 22:02:48] -rw-------. 1 boincer umatlas       654 Jul 27 22:02 tECNDmlNH07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmEWVLDmprnnon.diag
[2025-07-27 22:02:48] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 22:02 runtime_log.err
[2025-07-27 22:02:48] -rw-r--r--. 1 boincer umatlas     21801 Jul 27 22:02 stderr.txt
[2025-07-27 22:02:48] HITS file was successfully produced:
[2025-07-27 22:02:48] -rw-------. 1 boincer umatlas 209967609 Jul 27 22:01 shared/HITS.pool.root.1
[2025-07-27 22:02:48]  *** Contents of shared directory: ***
[2025-07-27 22:02:48] total 390436
[2025-07-27 22:02:48] -rw-r--r--. 2 boincer umatlas 188449772 Jul 27 20:50 ATLAS.root_0
[2025-07-27 22:02:48] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 20:50 start_atlas.sh
[2025-07-27 22:02:48] -rw-r--r--. 2 boincer umatlas    542892 Jul 27 20:50 input.tar.gz
[2025-07-27 22:02:48] -rw-------. 1 boincer umatlas 209967609 Jul 27 22:01 HITS.pool.root.1
[2025-07-27 22:02:48] -rw-------. 1 boincer umatlas    819200 Jul 27 22:02 result.tar.gz
22:02:49 (45832): run_atlas exited; CPU time 45255.038861
22:02:49 (45832): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN