Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:53:41 (324521): wrapper (7.7.26015): starting
19:53:41 (324521): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 19:53:41] Arguments: --nthreads 8
[2025-07-27 19:53:41] Threads: 8
[2025-07-27 19:53:41] Checking for CVMFS
[2025-07-27 19:53:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 19:53:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 19:53:41] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 19:53:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 19:53:41] 2.13.0.0 1483043 19066 285784 148828 0 571 35350980 40960001 16111 16776704 0 85849373 99.680 100315246 18989 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 19:53:41] CVMFS is ok
[2025-07-27 19:53:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 19:53:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 19:53:42] Further information can be found at the LHC@home message board.
[2025-07-27 19:53:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 19:53:42] Checking for apptainer binary...
[2025-07-27 19:53:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 19:53:42] Running /usr/bin/apptainer --version
[2025-07-27 19:53:42] apptainer version 1.4.1-1.el9
[2025-07-27 19:53:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 19:53:42] c7-4-30.aglt2.org
[2025-07-27 19:53:42] apptainer works
[2025-07-27 19:53:42] Set ATHENA_PROC_NUMBER=8
[2025-07-27 19:53:42] Set ATHENA_CORE_NUMBER=8
[2025-07-27 19:53:42] Starting ATLAS job with PandaID=6747586475
[2025-07-27 19:53:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 21:19:29]  *** The last 200 lines of the pilot log: ***
[2025-07-27 21:19:29] 2025-07-28 01:18:46,091 | INFO     |  -- lfn=log.45743349._053739.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 21:19:29] 2025-07-28 01:18:46,091 | INFO     | stage-out finished correctly
[2025-07-27 21:19:29] 2025-07-28 01:18:46,637 | WARNING  | process 337710 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 21:19:29] 2025-07-28 01:18:46,637 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6747586475/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 21:19:29] 2025-07-28 01:18:46,638 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6747586475/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 21:19:29] 2025-07-28 01:18:46,639 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3098495 B
[2025-07-27 21:19:29] 2025-07-28 01:18:46,639 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15783 B
[2025-07-27 21:19:29] 2025-07-28 01:18:46,639 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-27 21:19:29] 2025-07-28 01:18:46,656 | INFO     | sufficient remaining disk space (128973799424 B)
[2025-07-27 21:19:29] 2025-07-28 01:18:46,656 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-27 21:19:29] 2025-07-28 01:18:46,657 | INFO     | size of work directory /tmp/boinchome/slots/2/PanDA_Pilot-6747586475: 3400305 B (within 2537553920 B limit)
[2025-07-27 21:19:29] 2025-07-28 01:18:46,657 | INFO     | pfn file=/tmp/boinchome/slots/2/PanDA_Pilot-6747586475/HITS.45743349._053739.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-27 21:19:29] 2025-07-28 01:18:46,657 | INFO     | total size of present files: 0 B (workdir size: 3400305 B)
[2025-07-27 21:19:29] 2025-07-28 01:18:46,657 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/2/PanDA_Pilot-6747586475/HITS.45743349._053739.pool.root.1 since it does not exist
[2025-07-27 21:19:29] 2025-07-28 01:18:47,046 | INFO     | number of running child processes to parent process 337710: 1
[2025-07-27 21:19:29] 2025-07-28 01:18:47,046 | INFO     | maximum number of monitored processes: 6
[2025-07-27 21:19:29] 2025-07-28 01:18:49,326 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 21:19:29] 2025-07-28 01:18:49,549 | INFO     | monitor loop #370: job 0:6747586475 is in state 'finished'
[2025-07-27 21:19:29] 2025-07-28 01:18:49,549 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:19:29] 2025-07-28 01:18:51,968 | INFO     | job 6747586475 has state=finished
[2025-07-27 21:19:29] 2025-07-28 01:18:51,968 | INFO     | preparing for final server update for job 6747586475 in state='finished'
[2025-07-27 21:19:29] 2025-07-28 01:18:51,969 | INFO     | this job has now completed (state=finished)
[2025-07-27 21:19:29] 2025-07-28 01:18:51,969 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 21:19:29] 2025-07-28 01:18:51,969 | INFO     | log transfer has been attempted: DONE
[2025-07-27 21:19:29] 2025-07-28 01:18:51,969 | INFO     | job 6747586475 has finished - writing final server update
[2025-07-27 21:19:29] 2025-07-28 01:18:51,969 | INFO     | total number of processed events: 400 (read)
[2025-07-27 21:19:29] 2025-07-28 01:18:51,970 | INFO     | executing command: lscpu
[2025-07-27 21:19:29] 2025-07-28 01:18:52,036 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 21:19:29] 2025-07-28 01:18:52,052 | INFO     | monitor loop #371: job 0:6747586475 is in state 'finished'
[2025-07-27 21:19:29] 2025-07-28 01:18:52,053 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:19:29] 2025-07-28 01:18:54,555 | INFO     | monitor loop #372: job 0:6747586475 is in state 'finished'
[2025-07-27 21:19:29] 2025-07-28 01:18:54,555 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:19:29] 2025-07-28 01:18:56,836 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 21:19:29] 2025-07-28 01:18:56,842 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3006.7052916666657
[2025-07-27 21:19:29] 2025-07-28 01:18:56,855 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6747586475/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 21:19:29] 2025-07-28 01:18:56,856 | INFO     | extracted standard info from prmon json
[2025-07-27 21:19:29] 2025-07-28 01:18:56,856 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 21:19:29] 2025-07-28 01:18:56,856 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 21:19:29] 2025-07-28 01:18:56,856 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 21:19:29] 2025-07-28 01:18:56,856 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 21:19:29] 2025-07-28 01:18:56,858 | INFO     | fitting pss+swap vs Time
[2025-07-27 21:19:29] 2025-07-28 01:18:56,858 | INFO     | sum of square deviations: 136095575.0
[2025-07-27 21:19:29] 2025-07-28 01:18:56,858 | INFO     | sum of deviations: -5204516889.0
[2025-07-27 21:19:29] 2025-07-28 01:18:56,858 | INFO     | mean x: 1753663063.5
[2025-07-27 21:19:29] 2025-07-28 01:18:56,859 | INFO     | mean y: 2250725.552631579
[2025-07-27 21:19:29] 2025-07-28 01:18:56,859 | INFO     | -- intersect: 67065188161.99191
[2025-07-27 21:19:29] 2025-07-28 01:18:56,859 | INFO     | intersect: 67065188161.99191
[2025-07-27 21:19:29] 2025-07-28 01:18:56,859 | INFO     | chi2: 0.05963639289309093
[2025-07-27 21:19:29] 2025-07-28 01:18:56,859 | INFO     | -- intersect: 67065188161.99191
[2025-07-27 21:19:29] 2025-07-28 01:18:56,859 | INFO     | current memory leak: -38.24 B/s (using 76 data points, chi2=0.06)
[2025-07-27 21:19:29] 2025-07-28 01:18:56,859 | INFO     | could have reported an average CPU frequency of 2993 MHz (6 samples)
[2025-07-27 21:19:29] 2025-07-28 01:18:56,860 | INFO     | ..............................
[2025-07-27 21:19:29] 2025-07-28 01:18:56,860 | INFO     | . Timing measurements:
[2025-07-27 21:19:29] 2025-07-28 01:18:56,860 | INFO     | . get job = 0 s
[2025-07-27 21:19:29] 2025-07-28 01:18:56,860 | INFO     | . initial setup = 2 s
[2025-07-27 21:19:29] 2025-07-28 01:18:56,860 | INFO     | . payload setup = 9 s
[2025-07-27 21:19:29] 2025-07-28 01:18:56,860 | INFO     | . stage-in = 0 s
[2025-07-27 21:19:29] 2025-07-28 01:18:56,860 | INFO     | . payload execution = 5057 s
[2025-07-27 21:19:29] 2025-07-28 01:18:56,860 | INFO     | . stage-out = 0 s
[2025-07-27 21:19:29] 2025-07-28 01:18:56,860 | INFO     | . log creation = 0 s
[2025-07-27 21:19:29] 2025-07-28 01:18:56,860 | INFO     | ..............................
[2025-07-27 21:19:29] 2025-07-28 01:18:56,992 | INFO     | PID=329030 has CPU usage=9.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 21:19:29] 2025-07-28 01:18:56,992 | INFO     | .. there are 21 such processes running
[2025-07-27 21:19:29] 2025-07-28 01:18:57,122 | INFO     | 
[2025-07-27 21:19:29] 2025-07-28 01:18:57,122 | INFO     | job summary report
[2025-07-27 21:19:29] 2025-07-28 01:18:57,122 | INFO     | --------------------------------------------------
[2025-07-27 21:19:29] 2025-07-28 01:18:57,122 | INFO     | PanDA job id: 6747586475
[2025-07-27 21:19:29] 2025-07-28 01:18:57,122 | INFO     | task id: 45743349
[2025-07-27 21:19:29] 2025-07-28 01:18:57,122 | INFO     | errors: (none)
[2025-07-27 21:19:29] 2025-07-28 01:18:57,123 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 21:19:29] 2025-07-28 01:18:57,123 | INFO     | pilot state: finished 
[2025-07-27 21:19:29] 2025-07-28 01:18:57,123 | INFO     | transexitcode: 0
[2025-07-27 21:19:29] 2025-07-28 01:18:57,123 | INFO     | exeerrorcode: 0
[2025-07-27 21:19:29] 2025-07-28 01:18:57,123 | INFO     | exeerrordiag: 
[2025-07-27 21:19:29] 2025-07-28 01:18:57,123 | INFO     | exitcode: 0
[2025-07-27 21:19:29] 2025-07-28 01:18:57,123 | INFO     | exitmsg: OK
[2025-07-27 21:19:29] 2025-07-28 01:18:57,123 | INFO     | cpuconsumptiontime: 37479 s
[2025-07-27 21:19:29] 2025-07-28 01:18:57,123 | INFO     | nevents: 400
[2025-07-27 21:19:29] 2025-07-28 01:18:57,123 | INFO     | neventsw: 0
[2025-07-27 21:19:29] 2025-07-28 01:18:57,123 | INFO     | pid: 337710
[2025-07-27 21:19:29] 2025-07-28 01:18:57,123 | INFO     | pgrp: 337710
[2025-07-27 21:19:29] 2025-07-28 01:18:57,123 | INFO     | corecount: 8
[2025-07-27 21:19:29] 2025-07-28 01:18:57,123 | INFO     | event service: False
[2025-07-27 21:19:29] 2025-07-28 01:18:57,123 | INFO     | sizes: {0: 2397425, 1: 2397425, 7: 2397715, 11: 2397743, 5071: 2423960, 5072: 2432958, 5075: 2433170, 5083: 2433364}
[2025-07-27 21:19:29] 2025-07-28 01:18:57,123 | INFO     | --------------------------------------------------
[2025-07-27 21:19:29] 2025-07-28 01:18:57,124 | INFO     | 
[2025-07-27 21:19:29] 2025-07-28 01:18:57,124 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-27 21:19:29] 2025-07-28 01:18:57,143 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 21:19:29] 2025-07-28 01:18:57,143 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 21:19:29] 2025-07-28 01:18:57,143 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 21:19:29] 2025-07-28 01:18:57,144 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 21:19:29] 2025-07-28 01:18:57,144 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 21:19:29] 2025-07-28 01:18:57,144 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 21:19:29] 2025-07-28 01:18:57,144 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 21:19:29] 2025-07-28 01:18:57,144 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 21:19:29] 2025-07-28 01:18:57,144 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 21:19:29] 2025-07-28 01:18:57,144 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 21:19:29] 2025-07-28 01:18:57,144 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 21:19:29] 2025-07-28 01:18:57,144 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 21:19:29] 2025-07-28 01:18:57,144 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 21:19:29] 2025-07-28 01:18:57,144 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 21:19:29] 2025-07-28 01:18:57,144 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 21:19:29] 2025-07-28 01:18:57,144 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 21:19:29] 2025-07-28 01:18:57,144 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 21:19:29] 2025-07-28 01:18:57,144 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 21:19:29] 2025-07-28 01:18:57,144 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 21:19:29] 2025-07-28 01:18:57,145 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 21:19:29] 2025-07-28 01:18:57,145 | INFO     | job 6747586475 has completed (purged errors)
[2025-07-27 21:19:29] 2025-07-28 01:18:57,145 | INFO     | overall cleanup function is called
[2025-07-27 21:19:29] 2025-07-28 01:18:58,152 | INFO     | --- collectZombieJob: --- 10, [337710]
[2025-07-27 21:19:29] 2025-07-28 01:18:58,152 | INFO     | zombie collector waiting for pid 337710
[2025-07-27 21:19:29] 2025-07-28 01:18:58,152 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 21:19:29] 2025-07-28 01:18:58,153 | INFO     | collected zombie processes
[2025-07-27 21:19:29] 2025-07-28 01:18:58,153 | INFO     | will attempt to kill all subprocesses of pid=337710
[2025-07-27 21:19:29] 2025-07-28 01:18:58,524 | INFO     | process IDs to be killed: [337710] (in reverse order)
[2025-07-27 21:19:29] 2025-07-28 01:18:58,643 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 21:19:29] 2025-07-28 01:18:58,643 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 21:19:29] 2025-07-28 01:18:58,661 | INFO     | did not find any defunct processes belonging to 337710
[2025-07-27 21:19:29] 2025-07-28 01:18:58,680 | INFO     | did not find any defunct processes belonging to 337710
[2025-07-27 21:19:29] 2025-07-28 01:18:58,681 | INFO     | ready for new job
[2025-07-27 21:19:29] 2025-07-28 01:18:58,681 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 21:19:29] 2025-07-28 01:18:58,683 | INFO     | ***************************************
[2025-07-27 21:19:29] 2025-07-28 01:18:58,683 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 21:19:29] 2025-07-28 01:18:58,683 | INFO     | ***************************************
[2025-07-27 21:19:29] 2025-07-28 01:18:58,683 | INFO     | 
[2025-07-27 21:19:29] 2025-07-28 01:18:58,700 | INFO     | architecture information:
[2025-07-27 21:19:29] 2025-07-28 01:18:58,701 | INFO     | executing command: cat /etc/os-release
[2025-07-27 21:19:29] 2025-07-28 01:18:58,716 | INFO     | cat /etc/os-release:
[2025-07-27 21:19:29] NAME="CentOS Linux"
[2025-07-27 21:19:29] VERSION="7 (Core)"
[2025-07-27 21:19:29] ID="centos"
[2025-07-27 21:19:29] ID_LIKE="rhel fedora"
[2025-07-27 21:19:29] VERSION_ID="7"
[2025-07-27 21:19:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 21:19:29] ANSI_COLOR="0;31"
[2025-07-27 21:19:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 21:19:29] HOME_URL="https://www.centos.org/"
[2025-07-27 21:19:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 21:19:29] 
[2025-07-27 21:19:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 21:19:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 21:19:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 21:19:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 21:19:29] 
[2025-07-27 21:19:29] 2025-07-28 01:18:58,716 | INFO     | ***************************************
[2025-07-27 21:19:29] 2025-07-28 01:18:59,218 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-27 21:19:29] 2025-07-28 01:18:59,236 | INFO     | sufficient remaining disk space (128977993728 B)
[2025-07-27 21:19:29] 2025-07-28 01:18:59,236 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 21:19:29] 2025-07-28 01:18:59,237 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 21:19:29] 2025-07-28 01:18:59,237 | INFO     | update_server=False
[2025-07-27 21:19:29] 2025-07-28 01:18:59,237 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 21:19:29] 2025-07-28 01:18:59,237 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 21:19:29] 2025-07-28 01:18:59,371 | INFO     | all payload control threads have been joined
[2025-07-27 21:19:29] 2025-07-28 01:18:59,561 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 21:19:29] 2025-07-28 01:18:59,561 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 21:19:29] 2025-07-28 01:18:59,562 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:19:29] 2025-07-28 01:18:59,562 | INFO     | will abort loop
[2025-07-27 21:19:29] 2025-07-28 01:18:59,887 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 21:19:29] 2025-07-28 01:19:00,012 | INFO     | all job control threads have been joined
[2025-07-27 21:19:29] 2025-07-28 01:19:00,121 | INFO     | all data control threads have been joined
[2025-07-27 21:19:29] 2025-07-28 01:19:00,241 | INFO     | [job] retrieve thread has finished
[2025-07-27 21:19:29] 2025-07-28 01:19:00,376 | INFO     | [payload] control thread has finished
[2025-07-27 21:19:29] 2025-07-28 01:19:00,546 | INFO     | [data] copytool_in thread has finished
[2025-07-27 21:19:29] 2025-07-28 01:19:00,566 | INFO     | [job] job monitor thread has finished
[2025-07-27 21:19:29] 2025-07-28 01:19:00,882 | INFO     | [payload] validate_post thread has finished
[2025-07-27 21:19:29] 2025-07-28 01:19:01,018 | INFO     | [job] control thread has finished
[2025-07-27 21:19:29] 2025-07-28 01:19:01,068 | INFO     | [job] validate thread has finished
[2025-07-27 21:19:29] 2025-07-28 01:19:01,126 | INFO     | [data] control thread has finished
[2025-07-27 21:19:29] 2025-07-28 01:19:01,242 | INFO     | [data] copytool_out thread has finished
[2025-07-27 21:19:29] 2025-07-28 01:19:01,399 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 21:19:29] 2025-07-28 01:19:01,415 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 21:19:29] 2025-07-28 01:19:01,478 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 21:19:29] 2025-07-28 01:19:01,734 | INFO     | [payload] failed_post thread has finished
[2025-07-27 21:19:29] 2025-07-28 01:19:01,936 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:19:29] 2025-07-28 01:19:02,941 | INFO     | [job] queue monitor thread has finished
[2025-07-27 21:19:29] 2025-07-28 01:19:03,893 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 21:19:29] 2025-07-28 01:19:09,488 | INFO     | job.realtimelogging is not enabled
[2025-07-27 21:19:29] 2025-07-28 01:19:10,493 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 21:19:29] 2025-07-28 01:19:10,847 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140474882033472)>', '<ExcThread(monitor, started 140474379642624)>']
[2025-07-27 21:19:29] 2025-07-28 01:19:15,872 | INFO     | all workflow threads have been joined
[2025-07-27 21:19:29] 2025-07-28 01:19:15,872 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 21:19:29] 2025-07-28 01:19:15,873 | INFO     | traces error code: 0
[2025-07-27 21:19:29] 2025-07-28 01:19:15,873 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 21:19:29] 2025-07-28 01:19:29,566 | INFO     | PID=329030 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 21:19:29] 2025-07-28 01:19:29,567 | INFO     | .. there are 21 such processes running
[2025-07-27 21:19:29] 2025-07-28 01:19:29,567 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 21:19:29] 2025-07-28 01:19:29,567 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 21:19:29] 2025-07-28 01:19:29,567 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 21:19:29] 2025-07-28 01:19:29,567 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 21:19:29] 2025-07-28 01:19:29,567 | INFO     | [monitor] control thread has ended
[2025-07-27 21:19:29] 2025-07-28 01:19:29,720 [wrapper] ==== pilot stdout END ====
[2025-07-27 21:19:29] 2025-07-28 01:19:29,725 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 21:19:29] 2025-07-28 01:19:29,730 [wrapper] pilotpid: 329030
[2025-07-27 21:19:29] 2025-07-28 01:19:29,734 [wrapper] Pilot exit status: 0
[2025-07-27 21:19:29] 2025-07-28 01:19:29,751 [wrapper] pandaids: 6747586475
[2025-07-27 21:19:29] 2025-07-28 01:19:29,856 [wrapper] cleanup supervisor_pilot  691096 329031
[2025-07-27 21:19:29] 2025-07-28 01:19:29,859 [wrapper] Test setup, not cleaning
[2025-07-27 21:19:29] 2025-07-28 01:19:29,862 [wrapper] apfmon messages muted
[2025-07-27 21:19:29] 2025-07-28 01:19:29,864 [wrapper] ==== wrapper stdout END ====
[2025-07-27 21:19:29] 2025-07-28 01:19:29,867 [wrapper] ==== wrapper stderr END ====
[2025-07-27 21:19:29]  *** Error codes and diagnostics ***
[2025-07-27 21:19:29]     "exeErrorCode": 0,
[2025-07-27 21:19:29]     "exeErrorDiag": "",
[2025-07-27 21:19:29]     "pilotErrorCode": 0,
[2025-07-27 21:19:29]     "pilotErrorDiag": "",
[2025-07-27 21:19:29]  *** Listing of results directory ***
[2025-07-27 21:19:29] total 357852
[2025-07-27 21:19:29] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 14:08 pilot3.tar.gz
[2025-07-27 21:19:29] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 14:17 queuedata.json
[2025-07-27 21:19:29] -rwx------. 1 boincer umatlas     36292 Jul 27 14:17 runpilot2-wrapper.sh
[2025-07-27 21:19:29] -rw-r--r--. 1 boincer umatlas       100 Jul 27 19:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 21:19:29] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 19:53 run_atlas
[2025-07-27 21:19:29] -rw-r--r--. 1 boincer umatlas       105 Jul 27 19:53 job.xml
[2025-07-27 21:19:29] -rw-r--r--. 2 boincer umatlas 149919382 Jul 27 19:53 EVNT.45743347._002061.pool.root.1
[2025-07-27 21:19:29] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 19:53 start_atlas.sh
[2025-07-27 21:19:29] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 19:53 shared
[2025-07-27 21:19:29] -rw-r--r--. 2 boincer umatlas    542899 Jul 27 19:53 input.tar.gz
[2025-07-27 21:19:29] -rw-r--r--. 1 boincer umatlas         0 Jul 27 19:53 boinc_lockfile
[2025-07-27 21:19:29] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 19:53 pandaJob.out
[2025-07-27 21:19:29] -rw-------. 1 boincer umatlas    980125 Jul 27 19:53 agis_schedconf.cvmfs.json
[2025-07-27 21:19:29] -rw-------. 1 boincer umatlas   1593052 Jul 27 19:53 agis_ddmendpoints.agis.ALL.json
[2025-07-27 21:19:29] drwx------. 4 boincer umatlas      4096 Jul 27 19:53 pilot3
[2025-07-27 21:19:29] -rw-r--r--. 1 boincer umatlas      6935 Jul 27 21:12 init_data.xml
[2025-07-27 21:19:29] -rw-------. 1 boincer umatlas 211052611 Jul 27 21:18 HITS.45743349._053739.pool.root.1
[2025-07-27 21:19:29] -rw-r--r--. 1 boincer umatlas       529 Jul 27 21:18 boinc_task_state.xml
[2025-07-27 21:19:29] -rw-------. 1 boincer umatlas      1029 Jul 27 21:18 memory_monitor_summary.json
[2025-07-27 21:19:29] -rw-------. 1 boincer umatlas    302058 Jul 27 21:18 log.45743349._053739.job.log.tgz.1
[2025-07-27 21:19:29] -rw-------. 1 boincer umatlas        95 Jul 27 21:18 pilot_heartbeat.json
[2025-07-27 21:19:29] -rw-------. 1 boincer umatlas      7770 Jul 27 21:18 heartbeat.json
[2025-07-27 21:19:29] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 21:19 boinc_mmap_file
[2025-07-27 21:19:29] -rw-r--r--. 1 boincer umatlas        27 Jul 27 21:19 wrapper_checkpoint.txt
[2025-07-27 21:19:29] -rw-------. 1 boincer umatlas       822 Jul 27 21:19 pilotlog.txt
[2025-07-27 21:19:29] -rw-------. 1 boincer umatlas    494550 Jul 27 21:19 log.45743349._053739.job.log.1
[2025-07-27 21:19:29] -rw-------. 1 boincer umatlas       357 Jul 27 21:19 output.list
[2025-07-27 21:19:29] -rw-r--r--. 1 boincer umatlas       620 Jul 27 21:19 runtime_log
[2025-07-27 21:19:29] -rw-------. 1 boincer umatlas    819200 Jul 27 21:19 result.tar.gz
[2025-07-27 21:19:29] -rw-------. 1 boincer umatlas       652 Jul 27 21:19 TkLLDmt6K07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDme5VLDmygSUZm.diag
[2025-07-27 21:19:29] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 21:19 runtime_log.err
[2025-07-27 21:19:29] -rw-r--r--. 1 boincer umatlas     22501 Jul 27 21:19 stderr.txt
[2025-07-27 21:19:29] HITS file was successfully produced:
[2025-07-27 21:19:29] -rw-------. 1 boincer umatlas 211052611 Jul 27 21:18 shared/HITS.pool.root.1
[2025-07-27 21:19:29]  *** Contents of shared directory: ***
[2025-07-27 21:19:29] total 353868
[2025-07-27 21:19:29] -rw-r--r--. 2 boincer umatlas 149919382 Jul 27 19:53 ATLAS.root_0
[2025-07-27 21:19:29] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 19:53 start_atlas.sh
[2025-07-27 21:19:29] -rw-r--r--. 2 boincer umatlas    542899 Jul 27 19:53 input.tar.gz
[2025-07-27 21:19:29] -rw-------. 1 boincer umatlas 211052611 Jul 27 21:18 HITS.pool.root.1
[2025-07-27 21:19:29] -rw-------. 1 boincer umatlas    819200 Jul 27 21:19 result.tar.gz
21:19:31 (324521): run_atlas exited; CPU time 37670.721629
21:19:31 (324521): called boinc_finish(0)

</stderr_txt>
]]>

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