Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:42:40 (2557090): wrapper (7.7.26015): starting
20:42:40 (2557090): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 20:42:40] Arguments: --nthreads 12
[2025-07-27 20:42:40] Threads: 12
[2025-07-27 20:42:40] Checking for CVMFS
[2025-07-27 20:42:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 20:42:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 20:42:40] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 20:42:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 20:42:41] 2.13.0.0 633399 19097 313528 148829 1 215 27915752 32935937 7548 16776704 1 37640220 99.549 80600336 30947 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 20:42:41] CVMFS is ok
[2025-07-27 20:42:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 20:42:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 20:42:41] Further information can be found at the LHC@home message board.
[2025-07-27 20:42:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 20:42:41] Checking for apptainer binary...
[2025-07-27 20:42:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 20:42:41] Running /usr/bin/apptainer --version
[2025-07-27 20:42:41] apptainer version 1.4.1-1.el9
[2025-07-27 20:42:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 20:42:41] c6-6-39-1.aglt2.org
[2025-07-27 20:42:41] apptainer works
[2025-07-27 20:42:41] Set ATHENA_PROC_NUMBER=12
[2025-07-27 20:42:41] Set ATHENA_CORE_NUMBER=12
[2025-07-27 20:42:41] Starting ATLAS job with PandaID=6747500154
[2025-07-27 20:42:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 22:08:45]  *** The last 200 lines of the pilot log: ***
[2025-07-27 22:08:45]  is_tar=False
[2025-07-27 22:08:45]  lfn=log.45743349._051526.job.log.tgz.1
[2025-07-27 22:08:45]  mtime=0
[2025-07-27 22:08:45]  protocol_id=None
[2025-07-27 22:08:45]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 22:08:45]  replicas=None
[2025-07-27 22:08:45]  scope=mc23_13p6TeV
[2025-07-27 22:08:45]  status=None
[2025-07-27 22:08:45]  status_code=0
[2025-07-27 22:08:45]  storage_token=
[2025-07-27 22:08:45]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747500154/log.45743349._051526.job.log.tgz.1
[2025-07-27 22:08:45]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/24/e5/log.45743349._051526.job.log.tgz.1
[2025-07-27 22:08:45]  workdir=None
[2025-07-27 22:08:45] ]
[2025-07-27 22:08:45] 2025-07-28 02:08:06,689 | INFO     | transferring file log.45743349._051526.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747500154/log.45743349._051526.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 22:08:45] 2025-07-28 02:08:06,690 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747500154/log.45743349._051526.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._051526.job
[2025-07-27 22:08:45] 2025-07-28 02:08:06,707 | INFO     | adding to output.list: log.45743349._051526.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/24/e5/log.45743349._051526.job.log.tg
[2025-07-27 22:08:45] 2025-07-28 02:08:06,708 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 22:08:45] 2025-07-28 02:08:06,708 | INFO     | summary of transferred files:
[2025-07-27 22:08:45] 2025-07-28 02:08:06,708 | INFO     |  -- lfn=log.45743349._051526.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 22:08:45] 2025-07-28 02:08:06,708 | INFO     | stage-out finished correctly
[2025-07-27 22:08:45] 2025-07-28 02:08:07,970 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 22:08:45] 2025-07-28 02:08:08,804 | INFO     | job 6747500154 has state=finished
[2025-07-27 22:08:45] 2025-07-28 02:08:08,805 | INFO     | preparing for final server update for job 6747500154 in state='finished'
[2025-07-27 22:08:45] 2025-07-28 02:08:08,805 | INFO     | this job has now completed (state=finished)
[2025-07-27 22:08:45] 2025-07-28 02:08:08,805 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 22:08:45] 2025-07-28 02:08:08,805 | INFO     | log transfer has been attempted: DONE
[2025-07-27 22:08:45] 2025-07-28 02:08:08,805 | INFO     | job 6747500154 has finished - writing final server update
[2025-07-27 22:08:45] 2025-07-28 02:08:08,806 | INFO     | total number of processed events: 400 (read)
[2025-07-27 22:08:45] 2025-07-28 02:08:08,807 | INFO     | executing command: lscpu
[2025-07-27 22:08:45] 2025-07-28 02:08:08,862 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 22:08:45] 2025-07-28 02:08:09,529 | WARNING  | process 2570631 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 22:08:45] 2025-07-28 02:08:09,530 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747500154/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 22:08:45] 2025-07-28 02:08:09,771 | INFO     | number of running child processes to parent process 2570631: 1
[2025-07-27 22:08:45] 2025-07-28 02:08:09,772 | INFO     | maximum number of monitored processes: 6
[2025-07-27 22:08:45] 2025-07-28 02:08:12,274 | INFO     | monitor loop #377: job 0:6747500154 is in state 'finished'
[2025-07-27 22:08:45] 2025-07-28 02:08:12,274 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 22:08:45] 2025-07-28 02:08:13,201 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 22:08:45] 2025-07-28 02:08:13,206 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3092.306
[2025-07-27 22:08:45] 2025-07-28 02:08:13,225 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747500154/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 22:08:45] 2025-07-28 02:08:13,226 | INFO     | extracted standard info from prmon json
[2025-07-27 22:08:45] 2025-07-28 02:08:13,226 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 22:08:45] 2025-07-28 02:08:13,226 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 22:08:45] 2025-07-28 02:08:13,227 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 22:08:45] 2025-07-28 02:08:13,227 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 22:08:45] 2025-07-28 02:08:13,228 | INFO     | fitting pss+swap vs Time
[2025-07-27 22:08:45] 2025-07-28 02:08:13,229 | INFO     | sum of square deviations: 141539398.0
[2025-07-27 22:08:45] 2025-07-28 02:08:13,229 | INFO     | sum of deviations: -13319298699.0
[2025-07-27 22:08:45] 2025-07-28 02:08:13,229 | INFO     | mean x: 1753666026.0
[2025-07-27 22:08:45] 2025-07-28 02:08:13,229 | INFO     | mean y: 2526855.7662337665
[2025-07-27 22:08:45] 2025-07-28 02:08:13,229 | INFO     | -- intersect: 165027968171.9876
[2025-07-27 22:08:45] 2025-07-28 02:08:13,229 | INFO     | intersect: 165027968171.9876
[2025-07-27 22:08:45] 2025-07-28 02:08:13,229 | INFO     | chi2: 0.2580984990438387
[2025-07-27 22:08:45] 2025-07-28 02:08:13,229 | INFO     | -- intersect: 165027968171.9876
[2025-07-27 22:08:45] 2025-07-28 02:08:13,229 | INFO     | current memory leak: -94.10 B/s (using 77 data points, chi2=0.26)
[2025-07-27 22:08:45] 2025-07-28 02:08:13,230 | INFO     | could have reported an average CPU frequency of 2882 MHz (6 samples)
[2025-07-27 22:08:45] 2025-07-28 02:08:13,230 | INFO     | ..............................
[2025-07-27 22:08:45] 2025-07-28 02:08:13,230 | INFO     | . Timing measurements:
[2025-07-27 22:08:45] 2025-07-28 02:08:13,230 | INFO     | . get job = 0 s
[2025-07-27 22:08:45] 2025-07-28 02:08:13,230 | INFO     | . initial setup = 2 s
[2025-07-27 22:08:45] 2025-07-28 02:08:13,230 | INFO     | . payload setup = 7 s
[2025-07-27 22:08:45] 2025-07-28 02:08:13,230 | INFO     | . stage-in = 0 s
[2025-07-27 22:08:45] 2025-07-28 02:08:13,230 | INFO     | . payload execution = 5083 s
[2025-07-27 22:08:45] 2025-07-28 02:08:13,230 | INFO     | . stage-out = 0 s
[2025-07-27 22:08:45] 2025-07-28 02:08:13,230 | INFO     | . log creation = 0 s
[2025-07-27 22:08:45] 2025-07-28 02:08:13,230 | INFO     | ..............................
[2025-07-27 22:08:45] 2025-07-28 02:08:13,330 | INFO     | 
[2025-07-27 22:08:45] 2025-07-28 02:08:13,330 | INFO     | job summary report
[2025-07-27 22:08:45] 2025-07-28 02:08:13,330 | INFO     | --------------------------------------------------
[2025-07-27 22:08:45] 2025-07-28 02:08:13,330 | INFO     | PanDA job id: 6747500154
[2025-07-27 22:08:45] 2025-07-28 02:08:13,331 | INFO     | task id: 45743349
[2025-07-27 22:08:45] 2025-07-28 02:08:13,331 | INFO     | errors: (none)
[2025-07-27 22:08:45] 2025-07-28 02:08:13,331 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 22:08:45] 2025-07-28 02:08:13,331 | INFO     | pilot state: finished 
[2025-07-27 22:08:45] 2025-07-28 02:08:13,331 | INFO     | transexitcode: 0
[2025-07-27 22:08:45] 2025-07-28 02:08:13,331 | INFO     | exeerrorcode: 0
[2025-07-27 22:08:45] 2025-07-28 02:08:13,331 | INFO     | exeerrordiag: 
[2025-07-27 22:08:45] 2025-07-28 02:08:13,331 | INFO     | exitcode: 0
[2025-07-27 22:08:45] 2025-07-28 02:08:13,331 | INFO     | exitmsg: OK
[2025-07-27 22:08:45] 2025-07-28 02:08:13,331 | INFO     | cpuconsumptiontime: 52255 s
[2025-07-27 22:08:45] 2025-07-28 02:08:13,331 | INFO     | nevents: 400
[2025-07-27 22:08:45] 2025-07-28 02:08:13,331 | INFO     | neventsw: 0
[2025-07-27 22:08:45] 2025-07-28 02:08:13,331 | INFO     | pid: 2570631
[2025-07-27 22:08:45] 2025-07-28 02:08:13,331 | INFO     | pgrp: 2570631
[2025-07-27 22:08:45] 2025-07-28 02:08:13,331 | INFO     | corecount: 12
[2025-07-27 22:08:45] 2025-07-28 02:08:13,331 | INFO     | event service: False
[2025-07-27 22:08:45] 2025-07-28 02:08:13,331 | INFO     | sizes: {0: 2396644, 1: 2397500, 6: 2397762, 12: 2397790, 5094: 2424061, 5095: 2424060, 5097: 2433242, 5098: 2433298, 5103: 2433492}
[2025-07-27 22:08:45] 2025-07-28 02:08:13,331 | INFO     | --------------------------------------------------
[2025-07-27 22:08:45] 2025-07-28 02:08:13,331 | INFO     | 
[2025-07-27 22:08:45] 2025-07-28 02:08:13,331 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 22:08:45] 2025-07-28 02:08:13,352 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 22:08:45] 2025-07-28 02:08:13,352 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 22:08:45] 2025-07-28 02:08:13,352 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 22:08:45] 2025-07-28 02:08:13,353 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 22:08:45] 2025-07-28 02:08:13,353 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 22:08:45] 2025-07-28 02:08:13,353 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 22:08:45] 2025-07-28 02:08:13,353 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 22:08:45] 2025-07-28 02:08:13,353 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 22:08:45] 2025-07-28 02:08:13,353 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 22:08:45] 2025-07-28 02:08:13,353 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 22:08:45] 2025-07-28 02:08:13,353 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 22:08:45] 2025-07-28 02:08:13,353 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 22:08:45] 2025-07-28 02:08:13,353 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 22:08:45] 2025-07-28 02:08:13,353 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 22:08:45] 2025-07-28 02:08:13,353 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 22:08:45] 2025-07-28 02:08:13,353 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 22:08:45] 2025-07-28 02:08:13,353 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 22:08:45] 2025-07-28 02:08:13,353 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 22:08:45] 2025-07-28 02:08:13,353 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 22:08:45] 2025-07-28 02:08:13,353 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 22:08:45] 2025-07-28 02:08:13,354 | INFO     | job 6747500154 has completed (purged errors)
[2025-07-27 22:08:45] 2025-07-28 02:08:13,354 | INFO     | overall cleanup function is called
[2025-07-27 22:08:45] 2025-07-28 02:08:14,361 | INFO     | --- collectZombieJob: --- 10, [2570631]
[2025-07-27 22:08:45] 2025-07-28 02:08:14,361 | INFO     | zombie collector waiting for pid 2570631
[2025-07-27 22:08:45] 2025-07-28 02:08:14,362 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 22:08:45] 2025-07-28 02:08:14,362 | INFO     | collected zombie processes
[2025-07-27 22:08:45] 2025-07-28 02:08:14,362 | INFO     | will attempt to kill all subprocesses of pid=2570631
[2025-07-27 22:08:45] 2025-07-28 02:08:14,570 | INFO     | process IDs to be killed: [2570631] (in reverse order)
[2025-07-27 22:08:45] 2025-07-28 02:08:14,661 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 22:08:45] 2025-07-28 02:08:14,662 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 22:08:45] 2025-07-28 02:08:14,674 | INFO     | did not find any defunct processes belonging to 2570631
[2025-07-27 22:08:45] 2025-07-28 02:08:14,687 | INFO     | did not find any defunct processes belonging to 2570631
[2025-07-27 22:08:45] 2025-07-28 02:08:14,688 | INFO     | ready for new job
[2025-07-27 22:08:45] 2025-07-28 02:08:14,688 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 22:08:45] 2025-07-28 02:08:14,691 | INFO     | ***************************************
[2025-07-27 22:08:45] 2025-07-28 02:08:14,691 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 22:08:45] 2025-07-28 02:08:14,691 | INFO     | ***************************************
[2025-07-27 22:08:45] 2025-07-28 02:08:14,692 | INFO     | 
[2025-07-27 22:08:45] 2025-07-28 02:08:14,706 | INFO     | architecture information:
[2025-07-27 22:08:45] 2025-07-28 02:08:14,707 | INFO     | executing command: cat /etc/os-release
[2025-07-27 22:08:45] 2025-07-28 02:08:14,720 | INFO     | cat /etc/os-release:
[2025-07-27 22:08:45] NAME="CentOS Linux"
[2025-07-27 22:08:45] VERSION="7 (Core)"
[2025-07-27 22:08:45] ID="centos"
[2025-07-27 22:08:45] ID_LIKE="rhel fedora"
[2025-07-27 22:08:45] VERSION_ID="7"
[2025-07-27 22:08:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 22:08:45] ANSI_COLOR="0;31"
[2025-07-27 22:08:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 22:08:45] HOME_URL="https://www.centos.org/"
[2025-07-27 22:08:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 22:08:45] 
[2025-07-27 22:08:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 22:08:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 22:08:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 22:08:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 22:08:45] 
[2025-07-27 22:08:45] 2025-07-28 02:08:14,720 | INFO     | ***************************************
[2025-07-27 22:08:45] 2025-07-28 02:08:15,222 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 22:08:45] 2025-07-28 02:08:15,237 | INFO     | sufficient remaining disk space (76158074880 B)
[2025-07-27 22:08:45] 2025-07-28 02:08:15,238 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 22:08:45] 2025-07-28 02:08:15,238 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 22:08:45] 2025-07-28 02:08:15,238 | INFO     | update_server=False
[2025-07-27 22:08:45] 2025-07-28 02:08:15,238 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 22:08:45] 2025-07-28 02:08:15,239 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 22:08:45] 2025-07-28 02:08:15,239 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 22:08:45] 2025-07-28 02:08:15,594 | INFO     | all data control threads have been joined
[2025-07-27 22:08:45] 2025-07-28 02:08:15,787 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 22:08:45] 2025-07-28 02:08:15,787 | INFO     | aborting loop
[2025-07-27 22:08:45] 2025-07-28 02:08:16,097 | INFO     | all payload control threads have been joined
[2025-07-27 22:08:45] 2025-07-28 02:08:16,118 | INFO     | all job control threads have been joined
[2025-07-27 22:08:45] 2025-07-28 02:08:16,243 | INFO     | [job] retrieve thread has finished
[2025-07-27 22:08:45] 2025-07-28 02:08:16,244 | INFO     | [job] queue monitor thread has finished
[2025-07-27 22:08:45] 2025-07-28 02:08:16,338 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 22:08:45] 2025-07-28 02:08:16,452 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 22:08:45] 2025-07-28 02:08:16,580 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 22:08:45] 2025-07-28 02:08:16,599 | INFO     | [data] control thread has finished
[2025-07-27 22:08:45] 2025-07-28 02:08:16,792 | INFO     | [job] job monitor thread has finished
[2025-07-27 22:08:45] 2025-07-28 02:08:17,013 | INFO     | [payload] failed_post thread has finished
[2025-07-27 22:08:45] 2025-07-28 02:08:17,083 | INFO     | [data] copytool_in thread has finished
[2025-07-27 22:08:45] 2025-07-28 02:08:17,102 | INFO     | [payload] control thread has finished
[2025-07-27 22:08:45] 2025-07-28 02:08:17,123 | INFO     | [job] control thread has finished
[2025-07-27 22:08:45] 2025-07-28 02:08:17,244 | INFO     | [data] copytool_out thread has finished
[2025-07-27 22:08:45] 2025-07-28 02:08:17,290 | INFO     | [payload] validate_post thread has finished
[2025-07-27 22:08:45] 2025-07-28 02:08:17,424 | INFO     | [job] validate thread has finished
[2025-07-27 22:08:45] 2025-07-28 02:08:17,573 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 22:08:45] 2025-07-28 02:08:18,557 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 22:08:45] 2025-07-28 02:08:22,563 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 22:08:45] 2025-07-28 02:08:23,128 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139824561555264)>', '<ExcThread(monitor, started 139823775991552)>']
[2025-07-27 22:08:45] 2025-07-28 02:08:28,153 | INFO     | all workflow threads have been joined
[2025-07-27 22:08:45] 2025-07-28 02:08:28,153 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 22:08:45] 2025-07-28 02:08:28,154 | INFO     | traces error code: 0
[2025-07-27 22:08:45] 2025-07-28 02:08:28,154 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 22:08:45] 2025-07-28 02:08:45,019 | INFO     | PID=2561495 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 22:08:45] 2025-07-28 02:08:45,019 | INFO     | .. there are 11 such processes running
[2025-07-27 22:08:45] 2025-07-28 02:08:45,020 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 22:08:45] 2025-07-28 02:08:45,020 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 22:08:45] 2025-07-28 02:08:45,020 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 22:08:45] 2025-07-28 02:08:45,020 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 22:08:45] 2025-07-28 02:08:45,020 | INFO     | [monitor] control thread has ended
[2025-07-27 22:08:45] 2025-07-28 02:08:45,156 [wrapper] ==== pilot stdout END ====
[2025-07-27 22:08:45] 2025-07-28 02:08:45,159 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 22:08:45] 2025-07-28 02:08:45,161 [wrapper] pilotpid: 2561495
[2025-07-27 22:08:45] 2025-07-28 02:08:45,164 [wrapper] Pilot exit status: 0
[2025-07-27 22:08:45] 2025-07-28 02:08:45,175 [wrapper] pandaids: 6747500154
[2025-07-27 22:08:45] 2025-07-28 02:08:45,235 [wrapper] cleanup supervisor_pilot 2803410 2561496
[2025-07-27 22:08:45] 2025-07-28 02:08:45,237 [wrapper] Test setup, not cleaning
[2025-07-27 22:08:45] 2025-07-28 02:08:45,240 [wrapper] apfmon messages muted
[2025-07-27 22:08:45] 2025-07-28 02:08:45,242 [wrapper] ==== wrapper stdout END ====
[2025-07-27 22:08:45] 2025-07-28 02:08:45,245 [wrapper] ==== wrapper stderr END ====
[2025-07-27 22:08:45]  *** Error codes and diagnostics ***
[2025-07-27 22:08:45]     "exeErrorCode": 0,
[2025-07-27 22:08:45]     "exeErrorDiag": "",
[2025-07-27 22:08:45]     "pilotErrorCode": 0,
[2025-07-27 22:08:45]     "pilotErrorDiag": "",
[2025-07-27 22:08:45]  *** Listing of results directory ***
[2025-07-27 22:08:45] total 442292
[2025-07-27 22:08:45] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 10:53 pilot3.tar.gz
[2025-07-27 22:08:45] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 11:29 queuedata.json
[2025-07-27 22:08:45] -rwx------. 1 boincer umatlas     36292 Jul 27 11:30 runpilot2-wrapper.sh
[2025-07-27 22:08:45] -rw-r--r--. 1 boincer umatlas       100 Jul 27 20:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 22:08:45] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 20:42 run_atlas
[2025-07-27 22:08:45] -rw-r--r--. 1 boincer umatlas       105 Jul 27 20:42 job.xml
[2025-07-27 22:08:45] -rw-r--r--. 2 boincer umatlas 231143842 Jul 27 20:42 EVNT.45743347._002758.pool.root.1
[2025-07-27 22:08:45] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 20:42 start_atlas.sh
[2025-07-27 22:08:45] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 20:42 shared
[2025-07-27 22:08:45] -rw-r--r--. 2 boincer umatlas    542897 Jul 27 20:42 input.tar.gz
[2025-07-27 22:08:45] -rw-r--r--. 1 boincer umatlas         0 Jul 27 20:42 boinc_lockfile
[2025-07-27 22:08:45] -rw-r--r--. 1 boincer umatlas      2561 Jul 27 20:42 pandaJob.out
[2025-07-27 22:08:45] -rw-------. 1 boincer umatlas    980125 Jul 27 20:42 agis_schedconf.cvmfs.json
[2025-07-27 22:08:45] -rw-------. 1 boincer umatlas   1593052 Jul 27 20:42 agis_ddmendpoints.agis.ALL.json
[2025-07-27 22:08:45] drwx------. 4 boincer umatlas      4096 Jul 27 20:42 pilot3
[2025-07-27 22:08:45] -rw-r--r--. 1 boincer umatlas      6842 Jul 27 22:01 init_data.xml
[2025-07-27 22:08:45] -rw-------. 1 boincer umatlas 216170002 Jul 27 22:07 HITS.45743349._051526.pool.root.1
[2025-07-27 22:08:45] -rw-r--r--. 1 boincer umatlas       529 Jul 27 22:07 boinc_task_state.xml
[2025-07-27 22:08:45] -rw-------. 1 boincer umatlas      1035 Jul 27 22:08 memory_monitor_summary.json
[2025-07-27 22:08:45] -rw-------. 1 boincer umatlas    359297 Jul 27 22:08 log.45743349._051526.job.log.tgz.1
[2025-07-27 22:08:45] -rw-------. 1 boincer umatlas      7823 Jul 27 22:08 heartbeat.json
[2025-07-27 22:08:45] -rw-r--r--. 1 boincer umatlas        27 Jul 27 22:08 wrapper_checkpoint.txt
[2025-07-27 22:08:45] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 22:08 boinc_mmap_file
[2025-07-27 22:08:45] -rw-------. 1 boincer umatlas        95 Jul 27 22:08 pilot_heartbeat.json
[2025-07-27 22:08:45] -rw-------. 1 boincer umatlas       823 Jul 27 22:08 pilotlog.txt
[2025-07-27 22:08:45] -rw-------. 1 boincer umatlas    501777 Jul 27 22:08 log.45743349._051526.job.log.1
[2025-07-27 22:08:45] -rw-------. 1 boincer umatlas       357 Jul 27 22:08 output.list
[2025-07-27 22:08:45] -rw-r--r--. 1 boincer umatlas       620 Jul 27 22:08 runtime_log
[2025-07-27 22:08:45] -rw-------. 1 boincer umatlas    880640 Jul 27 22:08 result.tar.gz
[2025-07-27 22:08:45] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 22:08 runtime_log.err
[2025-07-27 22:08:45] -rw-------. 1 boincer umatlas       655 Jul 27 22:08 gw1LDmjVI07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm1fVLDmPJFjOn.diag
[2025-07-27 22:08:45] -rw-r--r--. 1 boincer umatlas     21625 Jul 27 22:08 stderr.txt
[2025-07-27 22:08:45] HITS file was successfully produced:
[2025-07-27 22:08:45] -rw-------. 1 boincer umatlas 216170002 Jul 27 22:07 shared/HITS.pool.root.1
[2025-07-27 22:08:45]  *** Contents of shared directory: ***
[2025-07-27 22:08:45] total 438244
[2025-07-27 22:08:45] -rw-r--r--. 2 boincer umatlas 231143842 Jul 27 20:42 ATLAS.root_0
[2025-07-27 22:08:45] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 20:42 start_atlas.sh
[2025-07-27 22:08:45] -rw-r--r--. 2 boincer umatlas    542897 Jul 27 20:42 input.tar.gz
[2025-07-27 22:08:45] -rw-------. 1 boincer umatlas 216170002 Jul 27 22:07 HITS.pool.root.1
[2025-07-27 22:08:45] -rw-------. 1 boincer umatlas    880640 Jul 27 22:08 result.tar.gz
22:08:47 (2557090): run_atlas exited; CPU time 52310.574671
22:08:47 (2557090): called boinc_finish(0)

</stderr_txt>
]]>

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