Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:36:34 (587940): wrapper (7.7.26015): starting
20:36:34 (587940): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 20:36:34] Arguments: --nthreads 12
[2025-07-27 20:36:34] Threads: 12
[2025-07-27 20:36:34] Checking for CVMFS
[2025-07-27 20:36:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 20:36:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 20:36:35] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 20:36:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 20:36:35] 2.12.6.0 418423 19093 334104 148829 3 499 26833036 32935936 9467 16776704 0 34280177 99.648 55282538 33003 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 20:36:35] CVMFS is ok
[2025-07-27 20:36:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 20:36:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 20:36:35] Further information can be found at the LHC@home message board.
[2025-07-27 20:36:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 20:36:35] Checking for apptainer binary...
[2025-07-27 20:36:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 20:36:35] Running /usr/bin/apptainer --version
[2025-07-27 20:36:35] apptainer version 1.4.1-1.el9
[2025-07-27 20:36:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 20:36:35] c6-1-26-2.aglt2.org
[2025-07-27 20:36:35] apptainer works
[2025-07-27 20:36:35] Set ATHENA_PROC_NUMBER=12
[2025-07-27 20:36:35] Set ATHENA_CORE_NUMBER=12
[2025-07-27 20:36:35] Starting ATLAS job with PandaID=6747578860
[2025-07-27 20:36:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 21:46:32]  *** The last 200 lines of the pilot log: ***
[2025-07-27 21:46:32]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/69/d4/log.45743349._053433.job.log.tgz.1
[2025-07-27 21:46:32]  workdir=None
[2025-07-27 21:46:32] ]
[2025-07-27 21:46:32] 2025-07-28 01:45:53,019 | INFO     | transferring file log.45743349._053433.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747578860/log.45743349._053433.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 21:46:32] 2025-07-28 01:45:53,019 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747578860/log.45743349._053433.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._053433.job
[2025-07-27 21:46:32] 2025-07-28 01:45:53,040 | INFO     | adding to output.list: log.45743349._053433.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/69/d4/log.45743349._053433.job.log.tg
[2025-07-27 21:46:32] 2025-07-28 01:45:53,041 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 21:46:32] 2025-07-28 01:45:53,041 | INFO     | summary of transferred files:
[2025-07-27 21:46:32] 2025-07-28 01:45:53,041 | INFO     |  -- lfn=log.45743349._053433.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 21:46:32] 2025-07-28 01:45:53,041 | INFO     | stage-out finished correctly
[2025-07-27 21:46:32] 2025-07-28 01:45:54,137 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 21:46:32] 2025-07-28 01:45:54,213 | INFO     | job 6747578860 has state=finished
[2025-07-27 21:46:32] 2025-07-28 01:45:54,213 | INFO     | preparing for final server update for job 6747578860 in state='finished'
[2025-07-27 21:46:32] 2025-07-28 01:45:54,214 | INFO     | this job has now completed (state=finished)
[2025-07-27 21:46:32] 2025-07-28 01:45:54,214 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 21:46:32] 2025-07-28 01:45:54,214 | INFO     | log transfer has been attempted: DONE
[2025-07-27 21:46:32] 2025-07-28 01:45:54,214 | INFO     | job 6747578860 has finished - writing final server update
[2025-07-27 21:46:32] 2025-07-28 01:45:54,215 | INFO     | total number of processed events: 400 (read)
[2025-07-27 21:46:32] 2025-07-28 01:45:54,215 | INFO     | executing command: lscpu
[2025-07-27 21:46:32] 2025-07-28 01:45:54,268 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 21:46:32] 2025-07-28 01:45:57,890 | WARNING  | process 598509 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 21:46:32] 2025-07-28 01:45:57,891 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747578860/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 21:46:32] 2025-07-28 01:45:57,892 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747578860/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 21:46:32] 2025-07-28 01:45:57,893 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4199714 B
[2025-07-27 21:46:32] 2025-07-28 01:45:57,893 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16030 B
[2025-07-27 21:46:32] 2025-07-28 01:45:57,893 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 21:46:32] 2025-07-28 01:45:58,885 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 21:46:32] 2025-07-28 01:45:58,894 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2693.206410714286
[2025-07-27 21:46:32] 2025-07-28 01:45:58,902 | INFO     | sufficient remaining disk space (76456919040 B)
[2025-07-27 21:46:32] 2025-07-28 01:45:58,903 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-27 21:46:32] 2025-07-28 01:45:58,904 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747578860/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 21:46:32] 2025-07-28 01:45:58,905 | INFO     | extracted standard info from prmon json
[2025-07-27 21:46:32] 2025-07-28 01:45:58,905 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 21:46:32] 2025-07-28 01:45:58,905 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 21:46:32] 2025-07-28 01:45:58,906 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 21:46:32] 2025-07-28 01:45:58,906 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 21:46:32] 2025-07-28 01:45:58,907 | INFO     | fitting pss+swap vs Time
[2025-07-27 21:46:32] 2025-07-28 01:45:58,908 | INFO     | sum of square deviations: 70364110.0
[2025-07-27 21:46:32] 2025-07-28 01:45:58,908 | INFO     | sum of deviations: -9608141720.000002
[2025-07-27 21:46:32] 2025-07-28 01:45:58,908 | INFO     | mean x: 1753665172.0
[2025-07-27 21:46:32] 2025-07-28 01:45:58,908 | INFO     | mean y: 2635230.8852459015
[2025-07-27 21:46:32] 2025-07-28 01:45:58,908 | INFO     | -- intersect: 239463682944.04727
[2025-07-27 21:46:32] 2025-07-28 01:45:58,908 | INFO     | intersect: 239463682944.04727
[2025-07-27 21:46:32] 2025-07-28 01:45:58,908 | INFO     | chi2: 0.1585631277888686
[2025-07-27 21:46:32] 2025-07-28 01:45:58,909 | INFO     | -- intersect: 239463682944.04727
[2025-07-27 21:46:32] 2025-07-28 01:45:58,909 | INFO     | current memory leak: -136.55 B/s (using 61 data points, chi2=0.16)
[2025-07-27 21:46:32] 2025-07-28 01:45:58,909 | INFO     | could have reported an average CPU frequency of 2781 MHz (6 samples)
[2025-07-27 21:46:32] 2025-07-28 01:45:58,909 | INFO     | ..............................
[2025-07-27 21:46:32] 2025-07-28 01:45:58,909 | INFO     | . Timing measurements:
[2025-07-27 21:46:32] 2025-07-28 01:45:58,910 | INFO     | . get job = 0 s
[2025-07-27 21:46:32] 2025-07-28 01:45:58,910 | INFO     | . initial setup = 2 s
[2025-07-27 21:46:32] 2025-07-28 01:45:58,910 | INFO     | . payload setup = 7 s
[2025-07-27 21:46:32] 2025-07-28 01:45:58,910 | INFO     | . stage-in = 0 s
[2025-07-27 21:46:32] 2025-07-28 01:45:58,910 | INFO     | . payload execution = 4116 s
[2025-07-27 21:46:32] 2025-07-28 01:45:58,910 | INFO     | . stage-out = 0 s
[2025-07-27 21:46:32] 2025-07-28 01:45:58,910 | INFO     | . log creation = 0 s
[2025-07-27 21:46:32] 2025-07-28 01:45:58,910 | INFO     | ..............................
[2025-07-27 21:46:32] 2025-07-28 01:45:58,993 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6747578860: 4495632 B (within 2537553920 B limit)
[2025-07-27 21:46:32] 2025-07-28 01:45:58,994 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6747578860/HITS.45743349._053433.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-27 21:46:32] 2025-07-28 01:45:58,994 | INFO     | total size of present files: 0 B (workdir size: 4495632 B)
[2025-07-27 21:46:32] 2025-07-28 01:45:58,994 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6747578860/HITS.45743349._053433.pool.root.1 since it does not exist
[2025-07-27 21:46:32] 2025-07-28 01:45:59,234 | INFO     | number of running child processes to parent process 598509: 1
[2025-07-27 21:46:32] 2025-07-28 01:45:59,235 | INFO     | maximum number of monitored processes: 6
[2025-07-27 21:46:32] 2025-07-28 01:45:59,235 | INFO     | aborting job monitoring since job object (job id=6747578860) has expired
[2025-07-27 21:46:32] 2025-07-28 01:45:59,392 | INFO     | 
[2025-07-27 21:46:32] 2025-07-28 01:45:59,392 | INFO     | job summary report
[2025-07-27 21:46:32] 2025-07-28 01:45:59,392 | INFO     | --------------------------------------------------
[2025-07-27 21:46:32] 2025-07-28 01:45:59,393 | INFO     | PanDA job id: 6747578860
[2025-07-27 21:46:32] 2025-07-28 01:45:59,393 | INFO     | task id: 45743349
[2025-07-27 21:46:32] 2025-07-28 01:45:59,393 | INFO     | errors: (none)
[2025-07-27 21:46:32] 2025-07-28 01:45:59,393 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 21:46:32] 2025-07-28 01:45:59,393 | INFO     | pilot state: finished 
[2025-07-27 21:46:32] 2025-07-28 01:45:59,393 | INFO     | transexitcode: 0
[2025-07-27 21:46:32] 2025-07-28 01:45:59,393 | INFO     | exeerrorcode: 0
[2025-07-27 21:46:32] 2025-07-28 01:45:59,393 | INFO     | exeerrordiag: 
[2025-07-27 21:46:32] 2025-07-28 01:45:59,393 | INFO     | exitcode: 0
[2025-07-27 21:46:32] 2025-07-28 01:45:59,393 | INFO     | exitmsg: OK
[2025-07-27 21:46:32] 2025-07-28 01:45:59,393 | INFO     | cpuconsumptiontime: 44544 s
[2025-07-27 21:46:32] 2025-07-28 01:45:59,393 | INFO     | nevents: 400
[2025-07-27 21:46:32] 2025-07-28 01:45:59,393 | INFO     | neventsw: 0
[2025-07-27 21:46:32] 2025-07-28 01:45:59,393 | INFO     | pid: 598509
[2025-07-27 21:46:32] 2025-07-28 01:45:59,393 | INFO     | pgrp: 598509
[2025-07-27 21:46:32] 2025-07-28 01:45:59,394 | INFO     | corecount: 12
[2025-07-27 21:46:32] 2025-07-28 01:45:59,394 | INFO     | event service: False
[2025-07-27 21:46:32] 2025-07-28 01:45:59,394 | INFO     | sizes: {0: 2397475, 1: 2397475, 5: 2397765, 11: 2397821, 4128: 2423659, 4129: 2432657, 4130: 2432841, 4135: 2433035}
[2025-07-27 21:46:32] 2025-07-28 01:45:59,394 | INFO     | --------------------------------------------------
[2025-07-27 21:46:32] 2025-07-28 01:45:59,394 | INFO     | 
[2025-07-27 21:46:32] 2025-07-28 01:45:59,394 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 21:46:32] 2025-07-28 01:45:59,415 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 21:46:32] 2025-07-28 01:45:59,415 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 21:46:32] 2025-07-28 01:45:59,415 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 21:46:32] 2025-07-28 01:45:59,415 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 21:46:32] 2025-07-28 01:45:59,415 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 21:46:32] 2025-07-28 01:45:59,415 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 21:46:32] 2025-07-28 01:45:59,415 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 21:46:32] 2025-07-28 01:45:59,415 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 21:46:32] 2025-07-28 01:45:59,416 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 21:46:32] 2025-07-28 01:45:59,416 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 21:46:32] 2025-07-28 01:45:59,416 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 21:46:32] 2025-07-28 01:45:59,416 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 21:46:32] 2025-07-28 01:45:59,416 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 21:46:32] 2025-07-28 01:45:59,416 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 21:46:32] 2025-07-28 01:45:59,416 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 21:46:32] 2025-07-28 01:45:59,416 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 21:46:32] 2025-07-28 01:45:59,416 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 21:46:32] 2025-07-28 01:45:59,416 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 21:46:32] 2025-07-28 01:45:59,416 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 21:46:32] 2025-07-28 01:45:59,416 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 21:46:32] 2025-07-28 01:45:59,416 | INFO     | job 6747578860 has completed (purged errors)
[2025-07-27 21:46:32] 2025-07-28 01:45:59,417 | INFO     | overall cleanup function is called
[2025-07-27 21:46:32] 2025-07-28 01:46:00,424 | INFO     | --- collectZombieJob: --- 10, [598509]
[2025-07-27 21:46:32] 2025-07-28 01:46:00,424 | INFO     | zombie collector waiting for pid 598509
[2025-07-27 21:46:32] 2025-07-28 01:46:00,424 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 21:46:32] 2025-07-28 01:46:00,425 | INFO     | collected zombie processes
[2025-07-27 21:46:32] 2025-07-28 01:46:00,425 | INFO     | will attempt to kill all subprocesses of pid=598509
[2025-07-27 21:46:32] 2025-07-28 01:46:00,685 | INFO     | process IDs to be killed: [598509] (in reverse order)
[2025-07-27 21:46:32] 2025-07-28 01:46:00,779 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 21:46:32] 2025-07-28 01:46:00,779 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 21:46:32] 2025-07-28 01:46:00,790 | INFO     | did not find any defunct processes belonging to 598509
[2025-07-27 21:46:32] 2025-07-28 01:46:00,801 | INFO     | did not find any defunct processes belonging to 598509
[2025-07-27 21:46:32] 2025-07-28 01:46:00,802 | INFO     | ready for new job
[2025-07-27 21:46:32] 2025-07-28 01:46:00,802 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 21:46:32] 2025-07-28 01:46:00,803 | INFO     | ***************************************
[2025-07-27 21:46:32] 2025-07-28 01:46:00,803 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 21:46:32] 2025-07-28 01:46:00,804 | INFO     | ***************************************
[2025-07-27 21:46:32] 2025-07-28 01:46:00,804 | INFO     | 
[2025-07-27 21:46:32] 2025-07-28 01:46:00,819 | INFO     | architecture information:
[2025-07-27 21:46:32] 2025-07-28 01:46:00,819 | INFO     | executing command: cat /etc/os-release
[2025-07-27 21:46:32] 2025-07-28 01:46:00,832 | INFO     | cat /etc/os-release:
[2025-07-27 21:46:32] NAME="CentOS Linux"
[2025-07-27 21:46:32] VERSION="7 (Core)"
[2025-07-27 21:46:32] ID="centos"
[2025-07-27 21:46:32] ID_LIKE="rhel fedora"
[2025-07-27 21:46:32] VERSION_ID="7"
[2025-07-27 21:46:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 21:46:32] ANSI_COLOR="0;31"
[2025-07-27 21:46:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 21:46:32] HOME_URL="https://www.centos.org/"
[2025-07-27 21:46:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 21:46:32] 
[2025-07-27 21:46:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 21:46:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 21:46:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 21:46:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 21:46:32] 
[2025-07-27 21:46:32] 2025-07-28 01:46:00,832 | INFO     | ***************************************
[2025-07-27 21:46:32] 2025-07-28 01:46:01,335 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 21:46:32] 2025-07-28 01:46:01,350 | INFO     | sufficient remaining disk space (76461113344 B)
[2025-07-27 21:46:32] 2025-07-28 01:46:01,351 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 21:46:32] 2025-07-28 01:46:01,351 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 21:46:32] 2025-07-28 01:46:01,351 | INFO     | update_server=False
[2025-07-27 21:46:32] 2025-07-28 01:46:01,351 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 21:46:32] 2025-07-28 01:46:01,351 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 21:46:32] 2025-07-28 01:46:01,739 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 21:46:32] 2025-07-28 01:46:01,739 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 21:46:32] 2025-07-28 01:46:01,739 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:46:32] 2025-07-28 01:46:01,739 | INFO     | will abort loop
[2025-07-27 21:46:32] 2025-07-28 01:46:01,955 | INFO     | all payload control threads have been joined
[2025-07-27 21:46:32] 2025-07-28 01:46:02,150 | INFO     | all data control threads have been joined
[2025-07-27 21:46:32] 2025-07-28 01:46:02,356 | INFO     | [job] retrieve thread has finished
[2025-07-27 21:46:32] 2025-07-28 01:46:02,515 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 21:46:32] 2025-07-28 01:46:02,651 | INFO     | all job control threads have been joined
[2025-07-27 21:46:32] 2025-07-28 01:46:02,739 | INFO     | [payload] failed_post thread has finished
[2025-07-27 21:46:32] 2025-07-28 01:46:02,744 | INFO     | [job] job monitor thread has finished
[2025-07-27 21:46:32] 2025-07-28 01:46:02,912 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 21:46:32] 2025-07-28 01:46:02,960 | INFO     | [payload] control thread has finished
[2025-07-27 21:46:32] 2025-07-28 01:46:03,014 | INFO     | [data] copytool_in thread has finished
[2025-07-27 21:46:32] 2025-07-28 01:46:03,059 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 21:46:32] 2025-07-28 01:46:03,155 | INFO     | [data] control thread has finished
[2025-07-27 21:46:32] 2025-07-28 01:46:03,356 | INFO     | [data] copytool_out thread has finished
[2025-07-27 21:46:32] 2025-07-28 01:46:03,475 | INFO     | [job] validate thread has finished
[2025-07-27 21:46:32] 2025-07-28 01:46:03,656 | INFO     | [job] control thread has finished
[2025-07-27 21:46:32] 2025-07-28 01:46:03,729 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 21:46:32] 2025-07-28 01:46:03,839 | INFO     | [payload] validate_post thread has finished
[2025-07-27 21:46:32] 2025-07-28 01:46:04,003 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:46:32] 2025-07-28 01:46:04,722 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 21:46:32] 2025-07-28 01:46:05,008 | INFO     | [job] queue monitor thread has finished
[2025-07-27 21:46:32] 2025-07-28 01:46:08,728 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 21:46:32] 2025-07-28 01:46:10,282 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140371957901120)>', '<ExcThread(monitor, started 140371317212928)>']
[2025-07-27 21:46:32] 2025-07-28 01:46:15,307 | INFO     | all workflow threads have been joined
[2025-07-27 21:46:32] 2025-07-28 01:46:15,307 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 21:46:32] 2025-07-28 01:46:15,307 | INFO     | traces error code: 0
[2025-07-27 21:46:32] 2025-07-28 01:46:15,308 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 21:46:32] 2025-07-28 01:46:31,997 | INFO     | PID=591524 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 21:46:32] 2025-07-28 01:46:31,998 | INFO     | .. there are 10 such processes running
[2025-07-27 21:46:32] 2025-07-28 01:46:31,999 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 21:46:32] 2025-07-28 01:46:31,999 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 21:46:32] 2025-07-28 01:46:31,999 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 21:46:32] 2025-07-28 01:46:31,999 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 21:46:32] 2025-07-28 01:46:31,999 | INFO     | [monitor] control thread has ended
[2025-07-27 21:46:32] 2025-07-28 01:46:32,141 [wrapper] ==== pilot stdout END ====
[2025-07-27 21:46:32] 2025-07-28 01:46:32,144 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 21:46:32] 2025-07-28 01:46:32,147 [wrapper] pilotpid: 591524
[2025-07-27 21:46:32] 2025-07-28 01:46:32,150 [wrapper] Pilot exit status: 0
[2025-07-27 21:46:32] 2025-07-28 01:46:32,162 [wrapper] pandaids: 6747578860
[2025-07-27 21:46:32] 2025-07-28 01:46:32,223 [wrapper] cleanup supervisor_pilot  846885 591525
[2025-07-27 21:46:32] 2025-07-28 01:46:32,227 [wrapper] Test setup, not cleaning
[2025-07-27 21:46:32] 2025-07-28 01:46:32,231 [wrapper] apfmon messages muted
[2025-07-27 21:46:32] 2025-07-28 01:46:32,234 [wrapper] ==== wrapper stdout END ====
[2025-07-27 21:46:32] 2025-07-28 01:46:32,237 [wrapper] ==== wrapper stderr END ====
[2025-07-27 21:46:32]  *** Error codes and diagnostics ***
[2025-07-27 21:46:32]     "exeErrorCode": 0,
[2025-07-27 21:46:32]     "exeErrorDiag": "",
[2025-07-27 21:46:32]     "pilotErrorCode": 0,
[2025-07-27 21:46:32]     "pilotErrorDiag": "",
[2025-07-27 21:46:32]  *** Listing of results directory ***
[2025-07-27 21:46:32] total 349192
[2025-07-27 21:46:32] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 13:39 pilot3.tar.gz
[2025-07-27 21:46:32] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 14:04 queuedata.json
[2025-07-27 21:46:32] -rwx------. 1 boincer umatlas     36292 Jul 27 14:07 runpilot2-wrapper.sh
[2025-07-27 21:46:32] -rw-r--r--. 1 boincer umatlas       100 Jul 27 20:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 21:46:32] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 20:36 run_atlas
[2025-07-27 21:46:32] -rw-r--r--. 1 boincer umatlas       105 Jul 27 20:36 job.xml
[2025-07-27 21:46:32] -rw-r--r--. 2 boincer umatlas 145774063 Jul 27 20:36 EVNT.45743347._002924.pool.root.1
[2025-07-27 21:46:32] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 20:36 start_atlas.sh
[2025-07-27 21:46:32] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 20:36 shared
[2025-07-27 21:46:32] -rw-r--r--. 2 boincer umatlas    542894 Jul 27 20:36 input.tar.gz
[2025-07-27 21:46:32] -rw-r--r--. 1 boincer umatlas         0 Jul 27 20:36 boinc_lockfile
[2025-07-27 21:46:32] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 20:36 pandaJob.out
[2025-07-27 21:46:32] -rw-------. 1 boincer umatlas    980125 Jul 27 20:36 agis_schedconf.cvmfs.json
[2025-07-27 21:46:32] -rw-------. 1 boincer umatlas   1593052 Jul 27 20:36 agis_ddmendpoints.agis.ALL.json
[2025-07-27 21:46:32] drwx------. 4 boincer umatlas      4096 Jul 27 20:36 pilot3
[2025-07-27 21:46:32] -rw-r--r--. 1 boincer umatlas      6843 Jul 27 21:40 init_data.xml
[2025-07-27 21:46:32] -rw-------. 1 boincer umatlas 206361216 Jul 27 21:45 HITS.45743349._053433.pool.root.1
[2025-07-27 21:46:32] -rw-r--r--. 1 boincer umatlas       529 Jul 27 21:45 boinc_task_state.xml
[2025-07-27 21:46:32] -rw-------. 1 boincer umatlas      1038 Jul 27 21:45 memory_monitor_summary.json
[2025-07-27 21:46:32] -rw-------. 1 boincer umatlas    364628 Jul 27 21:45 log.45743349._053433.job.log.tgz.1
[2025-07-27 21:46:32] -rw-------. 1 boincer umatlas      7826 Jul 27 21:45 heartbeat.json
[2025-07-27 21:46:32] -rw-r--r--. 1 boincer umatlas        27 Jul 27 21:46 wrapper_checkpoint.txt
[2025-07-27 21:46:32] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 21:46 boinc_mmap_file
[2025-07-27 21:46:32] -rw-------. 1 boincer umatlas        95 Jul 27 21:46 pilot_heartbeat.json
[2025-07-27 21:46:32] -rw-------. 1 boincer umatlas       822 Jul 27 21:46 pilotlog.txt
[2025-07-27 21:46:32] -rw-------. 1 boincer umatlas    418545 Jul 27 21:46 log.45743349._053433.job.log.1
[2025-07-27 21:46:32] -rw-------. 1 boincer umatlas       357 Jul 27 21:46 output.list
[2025-07-27 21:46:32] -rw-r--r--. 1 boincer umatlas       620 Jul 27 21:46 runtime_log
[2025-07-27 21:46:32] -rw-------. 1 boincer umatlas    798720 Jul 27 21:46 result.tar.gz
[2025-07-27 21:46:32] -rw-------. 1 boincer umatlas       655 Jul 27 21:46 XExNDmTxK07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmD3VLDmlbb8Lm.diag
[2025-07-27 21:46:32] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 21:46 runtime_log.err
[2025-07-27 21:46:32] -rw-r--r--. 1 boincer umatlas     22593 Jul 27 21:46 stderr.txt
[2025-07-27 21:46:32] HITS file was successfully produced:
[2025-07-27 21:46:32] -rw-------. 1 boincer umatlas 206361216 Jul 27 21:45 shared/HITS.pool.root.1
[2025-07-27 21:46:32]  *** Contents of shared directory: ***
[2025-07-27 21:46:32] total 345216
[2025-07-27 21:46:32] -rw-r--r--. 2 boincer umatlas 145774063 Jul 27 20:36 ATLAS.root_0
[2025-07-27 21:46:32] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 20:36 start_atlas.sh
[2025-07-27 21:46:32] -rw-r--r--. 2 boincer umatlas    542894 Jul 27 20:36 input.tar.gz
[2025-07-27 21:46:32] -rw-------. 1 boincer umatlas 206361216 Jul 27 21:45 HITS.pool.root.1
[2025-07-27 21:46:32] -rw-------. 1 boincer umatlas    798720 Jul 27 21:46 result.tar.gz
21:46:33 (587940): run_atlas exited; CPU time 44606.196725
21:46:33 (587940): called boinc_finish(0)

</stderr_txt>
]]>

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