Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:32:27 (791269): wrapper (7.7.26015): starting
19:32:27 (791269): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 19:32:27] Arguments: --nthreads 8
[2025-07-27 19:32:27] Threads: 8
[2025-07-27 19:32:27] Checking for CVMFS
[2025-07-27 19:32:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 19:32:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 19:32:27] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 19:32:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 19:32:28] 2.13.1.0 675479 14823 207024 148828 2 199 21042815 40960001 15303 16776704 0 39588222 99.866 27553005 51735 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 19:32:28] CVMFS is ok
[2025-07-27 19:32:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 19:32:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 19:32:28] Further information can be found at the LHC@home message board.
[2025-07-27 19:32:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 19:32:28] Checking for apptainer binary...
[2025-07-27 19:32:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 19:32:28] Running /usr/bin/apptainer --version
[2025-07-27 19:32:28] apptainer version 1.4.1-1.el9
[2025-07-27 19:32:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 19:32:28] c-212-11.aglt2.org
[2025-07-27 19:32:28] apptainer works
[2025-07-27 19:32:28] Set ATHENA_PROC_NUMBER=8
[2025-07-27 19:32:28] Set ATHENA_CORE_NUMBER=8
[2025-07-27 19:32:28] Starting ATLAS job with PandaID=6747578800
[2025-07-27 19:32:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 21:11:32]  *** The last 200 lines of the pilot log: ***
[2025-07-27 21:11:32]  protocol_id=None
[2025-07-27 21:11:32]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 21:11:32]  replicas=None
[2025-07-27 21:11:32]  scope=mc23_13p6TeV
[2025-07-27 21:11:32]  status=None
[2025-07-27 21:11:32]  status_code=0
[2025-07-27 21:11:32]  storage_token=
[2025-07-27 21:11:32]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6747578800/log.45743349._053403.job.log.tgz.1
[2025-07-27 21:11:32]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b4/66/log.45743349._053403.job.log.tgz.1
[2025-07-27 21:11:32]  workdir=None
[2025-07-27 21:11:32] ]
[2025-07-27 21:11:32] 2025-07-28 01:10:53,071 | INFO     | transferring file log.45743349._053403.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6747578800/log.45743349._053403.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 21:11:32] 2025-07-28 01:10:53,071 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6747578800/log.45743349._053403.job.log.tgz.1 /tmp/boinchome/slots/2/log.45743349._053403.job
[2025-07-27 21:11:32] 2025-07-28 01:10:53,093 | INFO     | adding to output.list: log.45743349._053403.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b4/66/log.45743349._053403.job.log.tg
[2025-07-27 21:11:32] 2025-07-28 01:10:53,093 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 21:11:32] 2025-07-28 01:10:53,093 | INFO     | summary of transferred files:
[2025-07-27 21:11:32] 2025-07-28 01:10:53,094 | INFO     |  -- lfn=log.45743349._053403.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 21:11:32] 2025-07-28 01:10:53,094 | INFO     | stage-out finished correctly
[2025-07-27 21:11:32] 2025-07-28 01:10:53,460 | WARNING  | process 802751 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 21:11:32] 2025-07-28 01:10:53,461 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6747578800/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 21:11:32] 2025-07-28 01:10:53,801 | INFO     | number of running child processes to parent process 802751: 1
[2025-07-27 21:11:32] 2025-07-28 01:10:53,802 | INFO     | maximum number of monitored processes: 6
[2025-07-27 21:11:32] 2025-07-28 01:10:53,908 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 21:11:32] 2025-07-28 01:10:54,010 | INFO     | job 6747578800 has state=finished
[2025-07-27 21:11:32] 2025-07-28 01:10:54,012 | INFO     | preparing for final server update for job 6747578800 in state='finished'
[2025-07-27 21:11:32] 2025-07-28 01:10:54,012 | INFO     | this job has now completed (state=finished)
[2025-07-27 21:11:32] 2025-07-28 01:10:54,012 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 21:11:32] 2025-07-28 01:10:54,012 | INFO     | log transfer has been attempted: DONE
[2025-07-27 21:11:32] 2025-07-28 01:10:54,012 | INFO     | job 6747578800 has finished - writing final server update
[2025-07-27 21:11:32] 2025-07-28 01:10:54,012 | INFO     | total number of processed events: 400 (read)
[2025-07-27 21:11:32] 2025-07-28 01:10:54,013 | INFO     | executing command: lscpu
[2025-07-27 21:11:32] 2025-07-28 01:10:54,075 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 21:11:32] 2025-07-28 01:10:56,304 | INFO     | monitor loop #428: job 0:6747578800 is in state 'finished'
[2025-07-27 21:11:32] 2025-07-28 01:10:56,304 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:11:32] 2025-07-28 01:10:58,807 | INFO     | monitor loop #429: job 0:6747578800 is in state 'finished'
[2025-07-27 21:11:32] 2025-07-28 01:10:58,807 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:11:32] 2025-07-28 01:10:59,184 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 21:11:32] 2025-07-28 01:10:59,189 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2963.4925937499993
[2025-07-27 21:11:32] 2025-07-28 01:10:59,203 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6747578800/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 21:11:32] 2025-07-28 01:10:59,204 | INFO     | extracted standard info from prmon json
[2025-07-27 21:11:32] 2025-07-28 01:10:59,204 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 21:11:32] 2025-07-28 01:10:59,204 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 21:11:32] 2025-07-28 01:10:59,204 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 21:11:32] 2025-07-28 01:10:59,204 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 21:11:32] 2025-07-28 01:10:59,206 | INFO     | fitting pss+swap vs Time
[2025-07-27 21:11:32] 2025-07-28 01:10:59,206 | INFO     | sum of square deviations: 218571540.0
[2025-07-27 21:11:32] 2025-07-28 01:10:59,207 | INFO     | sum of deviations: -9780943923.0
[2025-07-27 21:11:32] 2025-07-28 01:10:59,207 | INFO     | mean x: 1753662183.0
[2025-07-27 21:11:32] 2025-07-28 01:10:59,207 | INFO     | mean y: 2613229.2359550563
[2025-07-27 21:11:32] 2025-07-28 01:10:59,207 | INFO     | -- intersect: 78477932897.15231
[2025-07-27 21:11:32] 2025-07-28 01:10:59,207 | INFO     | intersect: 78477932897.15231
[2025-07-27 21:11:32] 2025-07-28 01:10:59,207 | INFO     | chi2: 0.04137525003859553
[2025-07-27 21:11:32] 2025-07-28 01:10:59,207 | INFO     | -- intersect: 78477932897.15231
[2025-07-27 21:11:32] 2025-07-28 01:10:59,207 | INFO     | current memory leak: -44.75 B/s (using 89 data points, chi2=0.04)
[2025-07-27 21:11:32] 2025-07-28 01:10:59,208 | INFO     | could have reported an average CPU frequency of 2935 MHz (7 samples)
[2025-07-27 21:11:32] 2025-07-28 01:10:59,208 | INFO     | ..............................
[2025-07-27 21:11:32] 2025-07-28 01:10:59,208 | INFO     | . Timing measurements:
[2025-07-27 21:11:32] 2025-07-28 01:10:59,208 | INFO     | . get job = 0 s
[2025-07-27 21:11:32] 2025-07-28 01:10:59,208 | INFO     | . initial setup = 2 s
[2025-07-27 21:11:32] 2025-07-28 01:10:59,208 | INFO     | . payload setup = 8 s
[2025-07-27 21:11:32] 2025-07-28 01:10:59,208 | INFO     | . stage-in = 0 s
[2025-07-27 21:11:32] 2025-07-28 01:10:59,208 | INFO     | . payload execution = 5859 s
[2025-07-27 21:11:32] 2025-07-28 01:10:59,208 | INFO     | . stage-out = 0 s
[2025-07-27 21:11:32] 2025-07-28 01:10:59,208 | INFO     | . log creation = 0 s
[2025-07-27 21:11:32] 2025-07-28 01:10:59,208 | INFO     | ..............................
[2025-07-27 21:11:32] 2025-07-28 01:10:59,284 | INFO     | 
[2025-07-27 21:11:32] 2025-07-28 01:10:59,285 | INFO     | job summary report
[2025-07-27 21:11:32] 2025-07-28 01:10:59,285 | INFO     | --------------------------------------------------
[2025-07-27 21:11:32] 2025-07-28 01:10:59,285 | INFO     | PanDA job id: 6747578800
[2025-07-27 21:11:32] 2025-07-28 01:10:59,285 | INFO     | task id: 45743349
[2025-07-27 21:11:32] 2025-07-28 01:10:59,285 | INFO     | errors: (none)
[2025-07-27 21:11:32] 2025-07-28 01:10:59,285 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 21:11:32] 2025-07-28 01:10:59,285 | INFO     | pilot state: finished 
[2025-07-27 21:11:32] 2025-07-28 01:10:59,285 | INFO     | transexitcode: 0
[2025-07-27 21:11:32] 2025-07-28 01:10:59,285 | INFO     | exeerrorcode: 0
[2025-07-27 21:11:32] 2025-07-28 01:10:59,285 | INFO     | exeerrordiag: 
[2025-07-27 21:11:32] 2025-07-28 01:10:59,285 | INFO     | exitcode: 0
[2025-07-27 21:11:32] 2025-07-28 01:10:59,285 | INFO     | exitmsg: OK
[2025-07-27 21:11:32] 2025-07-28 01:10:59,285 | INFO     | cpuconsumptiontime: 39902 s
[2025-07-27 21:11:32] 2025-07-28 01:10:59,285 | INFO     | nevents: 400
[2025-07-27 21:11:32] 2025-07-28 01:10:59,285 | INFO     | neventsw: 0
[2025-07-27 21:11:32] 2025-07-28 01:10:59,285 | INFO     | pid: 802751
[2025-07-27 21:11:32] 2025-07-28 01:10:59,286 | INFO     | pgrp: 802751
[2025-07-27 21:11:32] 2025-07-28 01:10:59,286 | INFO     | corecount: 8
[2025-07-27 21:11:32] 2025-07-28 01:10:59,286 | INFO     | event service: False
[2025-07-27 21:11:32] 2025-07-28 01:10:59,286 | INFO     | sizes: {0: 2397475, 6: 2397737, 11: 2397765, 5872: 2424361, 5874: 2433359, 5875: 2433415, 5880: 2433737}
[2025-07-27 21:11:32] 2025-07-28 01:10:59,286 | INFO     | --------------------------------------------------
[2025-07-27 21:11:32] 2025-07-28 01:10:59,286 | INFO     | 
[2025-07-27 21:11:32] 2025-07-28 01:10:59,286 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-27 21:11:32] 2025-07-28 01:10:59,311 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 21:11:32] 2025-07-28 01:10:59,311 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 21:11:32] 2025-07-28 01:10:59,311 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 21:11:32] 2025-07-28 01:10:59,311 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 21:11:32] 2025-07-28 01:10:59,311 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 21:11:32] 2025-07-28 01:10:59,311 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 21:11:32] 2025-07-28 01:10:59,312 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 21:11:32] 2025-07-28 01:10:59,312 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 21:11:32] 2025-07-28 01:10:59,312 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 21:11:32] 2025-07-28 01:10:59,312 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 21:11:32] 2025-07-28 01:10:59,312 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 21:11:32] 2025-07-28 01:10:59,312 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 21:11:32] 2025-07-28 01:10:59,312 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 21:11:32] 2025-07-28 01:10:59,312 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 21:11:32] 2025-07-28 01:10:59,312 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 21:11:32] 2025-07-28 01:10:59,312 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 21:11:32] 2025-07-28 01:10:59,312 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 21:11:32] 2025-07-28 01:10:59,312 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 21:11:32] 2025-07-28 01:10:59,312 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 21:11:32] 2025-07-28 01:10:59,312 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 21:11:32] 2025-07-28 01:10:59,313 | INFO     | job 6747578800 has completed (purged errors)
[2025-07-27 21:11:32] 2025-07-28 01:10:59,313 | INFO     | overall cleanup function is called
[2025-07-27 21:11:32] 2025-07-28 01:11:00,320 | INFO     | --- collectZombieJob: --- 10, [802751]
[2025-07-27 21:11:32] 2025-07-28 01:11:00,321 | INFO     | zombie collector waiting for pid 802751
[2025-07-27 21:11:32] 2025-07-28 01:11:00,321 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 21:11:32] 2025-07-28 01:11:00,321 | INFO     | collected zombie processes
[2025-07-27 21:11:32] 2025-07-28 01:11:00,321 | INFO     | will attempt to kill all subprocesses of pid=802751
[2025-07-27 21:11:32] 2025-07-28 01:11:00,669 | INFO     | process IDs to be killed: [802751] (in reverse order)
[2025-07-27 21:11:32] 2025-07-28 01:11:00,779 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 21:11:32] 2025-07-28 01:11:00,779 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 21:11:32] 2025-07-28 01:11:00,791 | INFO     | did not find any defunct processes belonging to 802751
[2025-07-27 21:11:32] 2025-07-28 01:11:00,802 | INFO     | did not find any defunct processes belonging to 802751
[2025-07-27 21:11:32] 2025-07-28 01:11:00,802 | INFO     | ready for new job
[2025-07-27 21:11:32] 2025-07-28 01:11:00,802 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 21:11:32] 2025-07-28 01:11:00,804 | INFO     | ***************************************
[2025-07-27 21:11:32] 2025-07-28 01:11:00,805 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 21:11:32] 2025-07-28 01:11:00,805 | INFO     | ***************************************
[2025-07-27 21:11:32] 2025-07-28 01:11:00,805 | INFO     | 
[2025-07-27 21:11:32] 2025-07-28 01:11:00,812 | INFO     | architecture information:
[2025-07-27 21:11:32] 2025-07-28 01:11:00,814 | INFO     | executing command: cat /etc/os-release
[2025-07-27 21:11:32] 2025-07-28 01:11:00,836 | INFO     | cat /etc/os-release:
[2025-07-27 21:11:32] NAME="CentOS Linux"
[2025-07-27 21:11:32] VERSION="7 (Core)"
[2025-07-27 21:11:32] ID="centos"
[2025-07-27 21:11:32] ID_LIKE="rhel fedora"
[2025-07-27 21:11:32] VERSION_ID="7"
[2025-07-27 21:11:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 21:11:32] ANSI_COLOR="0;31"
[2025-07-27 21:11:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 21:11:32] HOME_URL="https://www.centos.org/"
[2025-07-27 21:11:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 21:11:32] 
[2025-07-27 21:11:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 21:11:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 21:11:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 21:11:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 21:11:32] 
[2025-07-27 21:11:32] 2025-07-28 01:11:00,836 | INFO     | ***************************************
[2025-07-27 21:11:32] 2025-07-28 01:11:01,339 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-27 21:11:32] 2025-07-28 01:11:01,360 | INFO     | sufficient remaining disk space (129293615104 B)
[2025-07-27 21:11:32] 2025-07-28 01:11:01,360 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 21:11:32] 2025-07-28 01:11:01,360 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 21:11:32] 2025-07-28 01:11:01,360 | INFO     | update_server=False
[2025-07-27 21:11:32] 2025-07-28 01:11:01,360 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 21:11:32] 2025-07-28 01:11:01,360 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 21:11:32] 2025-07-28 01:11:01,970 | INFO     | all job control threads have been joined
[2025-07-27 21:11:32] 2025-07-28 01:11:02,059 | INFO     | all data control threads have been joined
[2025-07-27 21:11:32] 2025-07-28 01:11:02,104 | INFO     | all payload control threads have been joined
[2025-07-27 21:11:32] 2025-07-28 01:11:02,316 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:11:32] 2025-07-28 01:11:02,316 | INFO     | aborting loop
[2025-07-27 21:11:32] 2025-07-28 01:11:02,365 | INFO     | [job] retrieve thread has finished
[2025-07-27 21:11:32] 2025-07-28 01:11:02,382 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 21:11:32] 2025-07-28 01:11:02,977 | INFO     | [job] control thread has finished
[2025-07-27 21:11:32] 2025-07-28 01:11:03,064 | INFO     | [data] control thread has finished
[2025-07-27 21:11:32] 2025-07-28 01:11:03,072 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 21:11:32] 2025-07-28 01:11:03,109 | INFO     | [payload] control thread has finished
[2025-07-27 21:11:32] 2025-07-28 01:11:03,166 | INFO     | [payload] validate_post thread has finished
[2025-07-27 21:11:32] 2025-07-28 01:11:03,309 | INFO     | [data] copytool_in thread has finished
[2025-07-27 21:11:32] 2025-07-28 01:11:03,321 | INFO     | [job] job monitor thread has finished
[2025-07-27 21:11:32] 2025-07-28 01:11:03,331 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 21:11:32] 2025-07-28 01:11:03,367 | INFO     | [data] copytool_out thread has finished
[2025-07-27 21:11:32] 2025-07-28 01:11:03,450 | INFO     | [payload] failed_post thread has finished
[2025-07-27 21:11:32] 2025-07-28 01:11:03,795 | INFO     | [job] validate thread has finished
[2025-07-27 21:11:32] 2025-07-28 01:11:04,293 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:11:32] 2025-07-28 01:11:04,491 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 21:11:32] 2025-07-28 01:11:05,299 | INFO     | [job] queue monitor thread has finished
[2025-07-27 21:11:32] 2025-07-28 01:11:08,498 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 21:11:32] 2025-07-28 01:11:11,737 | INFO     | job.realtimelogging is not enabled
[2025-07-27 21:11:32] 2025-07-28 01:11:12,742 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 21:11:32] 2025-07-28 01:11:12,903 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139705336997696)>', '<ExcThread(monitor, started 139704406107904)>']
[2025-07-27 21:11:32] 2025-07-28 01:11:17,929 | INFO     | all workflow threads have been joined
[2025-07-27 21:11:32] 2025-07-28 01:11:17,929 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 21:11:32] 2025-07-28 01:11:17,930 | INFO     | traces error code: 0
[2025-07-27 21:11:32] 2025-07-28 01:11:17,931 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 21:11:32] 2025-07-28 01:11:31,745 | INFO     | PID=795158 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 21:11:32] 2025-07-28 01:11:31,745 | INFO     | .. there are 15 such processes running
[2025-07-27 21:11:32] 2025-07-28 01:11:31,746 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 21:11:32] 2025-07-28 01:11:31,746 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 21:11:32] 2025-07-28 01:11:31,746 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 21:11:32] 2025-07-28 01:11:31,746 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 21:11:32] 2025-07-28 01:11:31,746 | INFO     | [monitor] control thread has ended
[2025-07-27 21:11:32] 2025-07-28 01:11:31,916 [wrapper] ==== pilot stdout END ====
[2025-07-27 21:11:32] 2025-07-28 01:11:31,920 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 21:11:32] 2025-07-28 01:11:31,922 [wrapper] pilotpid: 795158
[2025-07-27 21:11:32] 2025-07-28 01:11:31,923 [wrapper] Pilot exit status: 0
[2025-07-27 21:11:32] 2025-07-28 01:11:31,937 [wrapper] pandaids: 6747578800
[2025-07-27 21:11:32] 2025-07-28 01:11:32,024 [wrapper] cleanup supervisor_pilot 1003505 795159
[2025-07-27 21:11:32] 2025-07-28 01:11:32,027 [wrapper] Test setup, not cleaning
[2025-07-27 21:11:32] 2025-07-28 01:11:32,029 [wrapper] apfmon messages muted
[2025-07-27 21:11:32] 2025-07-28 01:11:32,032 [wrapper] ==== wrapper stdout END ====
[2025-07-27 21:11:32] 2025-07-28 01:11:32,034 [wrapper] ==== wrapper stderr END ====
[2025-07-27 21:11:32]  *** Error codes and diagnostics ***
[2025-07-27 21:11:32]     "exeErrorCode": 0,
[2025-07-27 21:11:32]     "exeErrorDiag": "",
[2025-07-27 21:11:32]     "pilotErrorCode": 0,
[2025-07-27 21:11:32]     "pilotErrorDiag": "",
[2025-07-27 21:11:32]  *** Listing of results directory ***
[2025-07-27 21:11:32] total 348384
[2025-07-27 21:11:32] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 13:39 pilot3.tar.gz
[2025-07-27 21:11:32] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 14:04 queuedata.json
[2025-07-27 21:11:32] -rwx------. 1 boincer umatlas     36292 Jul 27 14:06 runpilot2-wrapper.sh
[2025-07-27 21:11:32] -rw-r--r--. 1 boincer umatlas       100 Jul 27 19:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 21:11:32] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 19:32 run_atlas
[2025-07-27 21:11:32] -rw-r--r--. 1 boincer umatlas       105 Jul 27 19:32 job.xml
[2025-07-27 21:11:32] -rw-r--r--. 2 boincer umatlas 143856831 Jul 27 19:32 EVNT.45743347._002922.pool.root.1
[2025-07-27 21:11:32] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 19:32 start_atlas.sh
[2025-07-27 21:11:32] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 19:32 shared
[2025-07-27 21:11:32] -rw-r--r--. 2 boincer umatlas    542900 Jul 27 19:32 input.tar.gz
[2025-07-27 21:11:32] -rw-r--r--. 1 boincer umatlas         0 Jul 27 19:32 boinc_lockfile
[2025-07-27 21:11:32] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 19:32 pandaJob.out
[2025-07-27 21:11:32] -rw-------. 1 boincer umatlas    980125 Jul 27 19:32 agis_schedconf.cvmfs.json
[2025-07-27 21:11:32] -rw-------. 1 boincer umatlas   1593052 Jul 27 19:32 agis_ddmendpoints.agis.ALL.json
[2025-07-27 21:11:32] drwx------. 4 boincer umatlas      4096 Jul 27 19:32 pilot3
[2025-07-27 21:11:32] -rw-r--r--. 1 boincer umatlas      6944 Jul 27 21:10 init_data.xml
[2025-07-27 21:11:32] -rw-------. 1 boincer umatlas 207246462 Jul 27 21:10 HITS.45743349._053403.pool.root.1
[2025-07-27 21:11:32] -rw-r--r--. 1 boincer umatlas       529 Jul 27 21:10 boinc_task_state.xml
[2025-07-27 21:11:32] -rw-------. 1 boincer umatlas        95 Jul 27 21:10 pilot_heartbeat.json
[2025-07-27 21:11:32] -rw-------. 1 boincer umatlas      1030 Jul 27 21:10 memory_monitor_summary.json
[2025-07-27 21:11:32] -rw-------. 1 boincer umatlas    317741 Jul 27 21:10 log.45743349._053403.job.log.tgz.1
[2025-07-27 21:11:32] -rw-------. 1 boincer umatlas      7771 Jul 27 21:10 heartbeat.json
[2025-07-27 21:11:32] -rw-r--r--. 1 boincer umatlas        27 Jul 27 21:11 wrapper_checkpoint.txt
[2025-07-27 21:11:32] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 21:11 boinc_mmap_file
[2025-07-27 21:11:32] -rw-------. 1 boincer umatlas       822 Jul 27 21:11 pilotlog.txt
[2025-07-27 21:11:32] -rw-------. 1 boincer umatlas    563520 Jul 27 21:11 log.45743349._053403.job.log.1
[2025-07-27 21:11:32] -rw-------. 1 boincer umatlas       357 Jul 27 21:11 output.list
[2025-07-27 21:11:32] -rw-r--r--. 1 boincer umatlas       620 Jul 27 21:11 runtime_log
[2025-07-27 21:11:32] -rw-------. 1 boincer umatlas    901120 Jul 27 21:11 result.tar.gz
[2025-07-27 21:11:32] -rw-------. 1 boincer umatlas       652 Jul 27 21:11 UbmNDmxwK07n9Rq4apOajLDm4fhM0noT9bVof3QYDmjt2KDmAMvtTn.diag
[2025-07-27 21:11:32] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 21:11 runtime_log.err
[2025-07-27 21:11:32] -rw-r--r--. 1 boincer umatlas     21811 Jul 27 21:11 stderr.txt
[2025-07-27 21:11:32] HITS file was successfully produced:
[2025-07-27 21:11:32] -rw-------. 1 boincer umatlas 207246462 Jul 27 21:10 shared/HITS.pool.root.1
[2025-07-27 21:11:32]  *** Contents of shared directory: ***
[2025-07-27 21:11:32] total 344316
[2025-07-27 21:11:32] -rw-r--r--. 2 boincer umatlas 143856831 Jul 27 19:32 ATLAS.root_0
[2025-07-27 21:11:32] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 19:32 start_atlas.sh
[2025-07-27 21:11:32] -rw-r--r--. 2 boincer umatlas    542900 Jul 27 19:32 input.tar.gz
[2025-07-27 21:11:32] -rw-------. 1 boincer umatlas 207246462 Jul 27 21:10 HITS.pool.root.1
[2025-07-27 21:11:32] -rw-------. 1 boincer umatlas    901120 Jul 27 21:11 result.tar.gz
21:11:33 (791269): run_atlas exited; CPU time 40018.031842
21:11:33 (791269): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN