Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:28:36 (49131): wrapper (7.7.26015): starting
19:28:36 (49131): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 19:28:36] Arguments: --nthreads 8
[2025-07-27 19:28:36] Threads: 8
[2025-07-27 19:28:36] Checking for CVMFS
[2025-07-27 19:28:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 19:28:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 19:28:36] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 19:28:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 19:28:36] 2.12.6.0 3144059 19024 342512 148828 2 362 32554180 40960000 9274 16776704 0 61800747 99.754 77989735 28021 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 19:28:36] CVMFS is ok
[2025-07-27 19:28:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 19:28:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 19:28:36] Further information can be found at the LHC@home message board.
[2025-07-27 19:28:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 19:28:36] Checking for apptainer binary...
[2025-07-27 19:28:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 19:28:36] Running /usr/bin/apptainer --version
[2025-07-27 19:28:36] apptainer version 1.4.1-1.el9
[2025-07-27 19:28:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 19:28:36] c7-11-15.aglt2.org
[2025-07-27 19:28:36] apptainer works
[2025-07-27 19:28:36] Set ATHENA_PROC_NUMBER=8
[2025-07-27 19:28:36] Set ATHENA_CORE_NUMBER=8
[2025-07-27 19:28:36] Starting ATLAS job with PandaID=6747579354
[2025-07-27 19:28:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 21:06:52]  *** The last 200 lines of the pilot log: ***
[2025-07-27 21:06:52]  protocol_id=None
[2025-07-27 21:06:52]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 21:06:52]  replicas=None
[2025-07-27 21:06:52]  scope=mc23_13p6TeV
[2025-07-27 21:06:52]  status=None
[2025-07-27 21:06:52]  status_code=0
[2025-07-27 21:06:52]  storage_token=
[2025-07-27 21:06:52]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747579354/log.45743349._053540.job.log.tgz.1
[2025-07-27 21:06:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5d/96/log.45743349._053540.job.log.tgz.1
[2025-07-27 21:06:52]  workdir=None
[2025-07-27 21:06:52] ]
[2025-07-27 21:06:52] 2025-07-28 01:06:11,678 | INFO     | transferring file log.45743349._053540.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747579354/log.45743349._053540.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 21:06:52] 2025-07-28 01:06:11,678 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747579354/log.45743349._053540.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._053540.job
[2025-07-27 21:06:52] 2025-07-28 01:06:11,703 | INFO     | adding to output.list: log.45743349._053540.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5d/96/log.45743349._053540.job.log.tg
[2025-07-27 21:06:52] 2025-07-28 01:06:11,704 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 21:06:52] 2025-07-28 01:06:11,704 | INFO     | summary of transferred files:
[2025-07-27 21:06:52] 2025-07-28 01:06:11,704 | INFO     |  -- lfn=log.45743349._053540.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 21:06:52] 2025-07-28 01:06:11,704 | INFO     | stage-out finished correctly
[2025-07-27 21:06:52] 2025-07-28 01:06:12,114 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 21:06:52] 2025-07-28 01:06:13,169 | INFO     | job 6747579354 has state=finished
[2025-07-27 21:06:52] 2025-07-28 01:06:13,170 | INFO     | preparing for final server update for job 6747579354 in state='finished'
[2025-07-27 21:06:52] 2025-07-28 01:06:13,170 | INFO     | this job has now completed (state=finished)
[2025-07-27 21:06:52] 2025-07-28 01:06:13,170 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 21:06:52] 2025-07-28 01:06:13,170 | INFO     | log transfer has been attempted: DONE
[2025-07-27 21:06:52] 2025-07-28 01:06:13,170 | INFO     | job 6747579354 has finished - writing final server update
[2025-07-27 21:06:52] 2025-07-28 01:06:13,170 | INFO     | total number of processed events: 400 (read)
[2025-07-27 21:06:52] 2025-07-28 01:06:13,174 | INFO     | executing command: lscpu
[2025-07-27 21:06:52] 2025-07-28 01:06:13,241 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 21:06:52] 2025-07-28 01:06:13,424 | INFO     | monitor loop #420: job 0:6747579354 is in state 'finished'
[2025-07-27 21:06:52] 2025-07-28 01:06:13,424 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:06:52] 2025-07-28 01:06:14,191 | INFO     | PID=53370 has CPU usage=10.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 21:06:52] 2025-07-28 01:06:14,191 | INFO     | .. there are 9 such processes running
[2025-07-27 21:06:52] 2025-07-28 01:06:15,929 | INFO     | monitor loop #421: job 0:6747579354 is in state 'finished'
[2025-07-27 21:06:52] 2025-07-28 01:06:15,929 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:06:52] 2025-07-28 01:06:18,433 | INFO     | monitor loop #422: job 0:6747579354 is in state 'finished'
[2025-07-27 21:06:52] 2025-07-28 01:06:18,434 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:06:52] 2025-07-28 01:06:19,799 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 21:06:52] 2025-07-28 01:06:19,804 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3274.6200625000006
[2025-07-27 21:06:52] 2025-07-28 01:06:19,814 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747579354/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 21:06:52] 2025-07-28 01:06:19,815 | INFO     | extracted standard info from prmon json
[2025-07-27 21:06:52] 2025-07-28 01:06:19,815 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 21:06:52] 2025-07-28 01:06:19,815 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 21:06:52] 2025-07-28 01:06:19,815 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 21:06:52] 2025-07-28 01:06:19,816 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 21:06:52] 2025-07-28 01:06:19,817 | INFO     | fitting pss+swap vs Time
[2025-07-27 21:06:52] 2025-07-28 01:06:19,817 | INFO     | sum of square deviations: 218571540.0
[2025-07-27 21:06:52] 2025-07-28 01:06:19,817 | INFO     | sum of deviations: -22655259700.0
[2025-07-27 21:06:52] 2025-07-28 01:06:19,817 | INFO     | mean x: 1753661948.0
[2025-07-27 21:06:52] 2025-07-28 01:06:19,818 | INFO     | mean y: 2379019.224719101
[2025-07-27 21:06:52] 2025-07-28 01:06:19,818 | INFO     | -- intersect: 181772004003.0991
[2025-07-27 21:06:52] 2025-07-28 01:06:19,818 | INFO     | intersect: 181772004003.0991
[2025-07-27 21:06:52] 2025-07-28 01:06:19,818 | INFO     | chi2: 0.18276310195553028
[2025-07-27 21:06:52] 2025-07-28 01:06:19,818 | INFO     | -- intersect: 181772004003.0991
[2025-07-27 21:06:52] 2025-07-28 01:06:19,818 | INFO     | current memory leak: -103.65 B/s (using 89 data points, chi2=0.18)
[2025-07-27 21:06:52] 2025-07-28 01:06:19,818 | INFO     | could have reported an average CPU frequency of 3264 MHz (7 samples)
[2025-07-27 21:06:52] 2025-07-28 01:06:19,818 | INFO     | ..............................
[2025-07-27 21:06:52] 2025-07-28 01:06:19,818 | INFO     | . Timing measurements:
[2025-07-27 21:06:52] 2025-07-28 01:06:19,818 | INFO     | . get job = 0 s
[2025-07-27 21:06:52] 2025-07-28 01:06:19,818 | INFO     | . initial setup = 2 s
[2025-07-27 21:06:52] 2025-07-28 01:06:19,819 | INFO     | . payload setup = 7 s
[2025-07-27 21:06:52] 2025-07-28 01:06:19,819 | INFO     | . stage-in = 0 s
[2025-07-27 21:06:52] 2025-07-28 01:06:19,819 | INFO     | . payload execution = 5814 s
[2025-07-27 21:06:52] 2025-07-28 01:06:19,819 | INFO     | . stage-out = 0 s
[2025-07-27 21:06:52] 2025-07-28 01:06:19,819 | INFO     | . log creation = 0 s
[2025-07-27 21:06:52] 2025-07-28 01:06:19,819 | INFO     | ..............................
[2025-07-27 21:06:52] 2025-07-28 01:06:19,890 | INFO     | 
[2025-07-27 21:06:52] 2025-07-28 01:06:19,890 | INFO     | job summary report
[2025-07-27 21:06:52] 2025-07-28 01:06:19,890 | INFO     | --------------------------------------------------
[2025-07-27 21:06:52] 2025-07-28 01:06:19,890 | INFO     | PanDA job id: 6747579354
[2025-07-27 21:06:52] 2025-07-28 01:06:19,890 | INFO     | task id: 45743349
[2025-07-27 21:06:52] 2025-07-28 01:06:19,890 | INFO     | errors: (none)
[2025-07-27 21:06:52] 2025-07-28 01:06:19,890 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 21:06:52] 2025-07-28 01:06:19,890 | INFO     | pilot state: finished 
[2025-07-27 21:06:52] 2025-07-28 01:06:19,891 | INFO     | transexitcode: 0
[2025-07-27 21:06:52] 2025-07-28 01:06:19,891 | INFO     | exeerrorcode: 0
[2025-07-27 21:06:52] 2025-07-28 01:06:19,891 | INFO     | exeerrordiag: 
[2025-07-27 21:06:52] 2025-07-28 01:06:19,891 | INFO     | exitcode: 0
[2025-07-27 21:06:52] 2025-07-28 01:06:19,891 | INFO     | exitmsg: OK
[2025-07-27 21:06:52] 2025-07-28 01:06:19,891 | INFO     | cpuconsumptiontime: 37739 s
[2025-07-27 21:06:52] 2025-07-28 01:06:19,891 | INFO     | nevents: 400
[2025-07-27 21:06:52] 2025-07-28 01:06:19,891 | INFO     | neventsw: 0
[2025-07-27 21:06:52] 2025-07-28 01:06:19,891 | INFO     | pid: 61137
[2025-07-27 21:06:52] 2025-07-28 01:06:19,891 | INFO     | pgrp: 61137
[2025-07-27 21:06:52] 2025-07-28 01:06:19,891 | INFO     | corecount: 8
[2025-07-27 21:06:52] 2025-07-28 01:06:19,891 | INFO     | event service: False
[2025-07-27 21:06:52] 2025-07-28 01:06:19,891 | INFO     | sizes: {0: 2397475, 5: 2397737, 11: 2397793, 5825: 2424611, 5826: 2433665, 5834: 2433803}
[2025-07-27 21:06:52] 2025-07-28 01:06:19,891 | INFO     | --------------------------------------------------
[2025-07-27 21:06:52] 2025-07-28 01:06:19,891 | INFO     | 
[2025-07-27 21:06:52] 2025-07-28 01:06:19,891 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 21:06:52] 2025-07-28 01:06:19,917 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 21:06:52] 2025-07-28 01:06:19,918 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 21:06:52] 2025-07-28 01:06:19,918 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 21:06:52] 2025-07-28 01:06:19,918 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 21:06:52] 2025-07-28 01:06:19,918 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 21:06:52] 2025-07-28 01:06:19,918 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 21:06:52] 2025-07-28 01:06:19,918 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 21:06:52] 2025-07-28 01:06:19,918 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 21:06:52] 2025-07-28 01:06:19,918 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 21:06:52] 2025-07-28 01:06:19,918 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 21:06:52] 2025-07-28 01:06:19,918 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 21:06:52] 2025-07-28 01:06:19,918 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 21:06:52] 2025-07-28 01:06:19,918 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 21:06:52] 2025-07-28 01:06:19,918 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 21:06:52] 2025-07-28 01:06:19,918 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 21:06:52] 2025-07-28 01:06:19,918 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 21:06:52] 2025-07-28 01:06:19,919 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 21:06:52] 2025-07-28 01:06:19,919 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 21:06:52] 2025-07-28 01:06:19,919 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 21:06:52] 2025-07-28 01:06:19,919 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 21:06:52] 2025-07-28 01:06:19,919 | INFO     | job 6747579354 has completed (purged errors)
[2025-07-27 21:06:52] 2025-07-28 01:06:19,919 | INFO     | overall cleanup function is called
[2025-07-27 21:06:52] 2025-07-28 01:06:20,928 | INFO     | --- collectZombieJob: --- 10, [61137]
[2025-07-27 21:06:52] 2025-07-28 01:06:20,928 | INFO     | zombie collector waiting for pid 61137
[2025-07-27 21:06:52] 2025-07-28 01:06:20,928 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 21:06:52] 2025-07-28 01:06:20,928 | INFO     | collected zombie processes
[2025-07-27 21:06:52] 2025-07-28 01:06:20,928 | INFO     | will attempt to kill all subprocesses of pid=61137
[2025-07-27 21:06:52] 2025-07-28 01:06:21,269 | INFO     | process IDs to be killed: [61137] (in reverse order)
[2025-07-27 21:06:52] 2025-07-28 01:06:21,399 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 21:06:52] 2025-07-28 01:06:21,400 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 21:06:52] 2025-07-28 01:06:21,414 | INFO     | did not find any defunct processes belonging to 61137
[2025-07-27 21:06:52] 2025-07-28 01:06:21,425 | INFO     | did not find any defunct processes belonging to 61137
[2025-07-27 21:06:52] 2025-07-28 01:06:21,426 | INFO     | ready for new job
[2025-07-27 21:06:52] 2025-07-28 01:06:21,426 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 21:06:52] 2025-07-28 01:06:21,427 | INFO     | ***************************************
[2025-07-27 21:06:52] 2025-07-28 01:06:21,427 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 21:06:52] 2025-07-28 01:06:21,427 | INFO     | ***************************************
[2025-07-27 21:06:52] 2025-07-28 01:06:21,428 | INFO     | 
[2025-07-27 21:06:52] 2025-07-28 01:06:21,444 | INFO     | architecture information:
[2025-07-27 21:06:52] 2025-07-28 01:06:21,445 | INFO     | executing command: cat /etc/os-release
[2025-07-27 21:06:52] 2025-07-28 01:06:21,467 | INFO     | cat /etc/os-release:
[2025-07-27 21:06:52] NAME="CentOS Linux"
[2025-07-27 21:06:52] VERSION="7 (Core)"
[2025-07-27 21:06:52] ID="centos"
[2025-07-27 21:06:52] ID_LIKE="rhel fedora"
[2025-07-27 21:06:52] VERSION_ID="7"
[2025-07-27 21:06:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 21:06:52] ANSI_COLOR="0;31"
[2025-07-27 21:06:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 21:06:52] HOME_URL="https://www.centos.org/"
[2025-07-27 21:06:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 21:06:52] 
[2025-07-27 21:06:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 21:06:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 21:06:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 21:06:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 21:06:52] 
[2025-07-27 21:06:52] 2025-07-28 01:06:21,467 | INFO     | ***************************************
[2025-07-27 21:06:52] 2025-07-28 01:06:21,971 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 21:06:52] 2025-07-28 01:06:22,003 | INFO     | sufficient remaining disk space (86274736128 B)
[2025-07-27 21:06:52] 2025-07-28 01:06:22,004 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 21:06:52] 2025-07-28 01:06:22,004 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 21:06:52] 2025-07-28 01:06:22,004 | INFO     | update_server=False
[2025-07-27 21:06:52] 2025-07-28 01:06:22,004 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 21:06:52] 2025-07-28 01:06:22,004 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:06:52] 2025-07-28 01:06:22,004 | INFO     | aborting loop
[2025-07-27 21:06:52] 2025-07-28 01:06:22,295 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 21:06:52] 2025-07-28 01:06:22,665 | INFO     | all job control threads have been joined
[2025-07-27 21:06:52] 2025-07-28 01:06:22,738 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 21:06:52] 2025-07-28 01:06:22,863 | INFO     | all data control threads have been joined
[2025-07-27 21:06:52] 2025-07-28 01:06:23,010 | INFO     | [job] retrieve thread has finished
[2025-07-27 21:06:52] 2025-07-28 01:06:23,012 | INFO     | [job] job monitor thread has finished
[2025-07-27 21:06:52] 2025-07-28 01:06:23,065 | INFO     | all payload control threads have been joined
[2025-07-27 21:06:52] 2025-07-28 01:06:23,147 | INFO     | [payload] failed_post thread has finished
[2025-07-27 21:06:52] 2025-07-28 01:06:23,242 | INFO     | [job] validate thread has finished
[2025-07-27 21:06:52] 2025-07-28 01:06:23,263 | INFO     | [payload] validate_post thread has finished
[2025-07-27 21:06:52] 2025-07-28 01:06:23,524 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 21:06:52] 2025-07-28 01:06:23,670 | INFO     | [job] control thread has finished
[2025-07-27 21:06:52] 2025-07-28 01:06:23,868 | INFO     | [data] control thread has finished
[2025-07-27 21:06:52] 2025-07-28 01:06:23,947 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 21:06:52] 2025-07-28 01:06:23,965 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 21:06:52] 2025-07-28 01:06:23,972 | INFO     | [data] copytool_in thread has finished
[2025-07-27 21:06:52] 2025-07-28 01:06:24,071 | INFO     | [payload] control thread has finished
[2025-07-27 21:06:52] 2025-07-28 01:06:24,300 | INFO     | [data] copytool_out thread has finished
[2025-07-27 21:06:52] 2025-07-28 01:06:24,903 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:06:52] 2025-07-28 01:06:25,908 | INFO     | [job] queue monitor thread has finished
[2025-07-27 21:06:52] 2025-07-28 01:06:26,748 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 21:06:52] 2025-07-28 01:06:32,263 | INFO     | job.realtimelogging is not enabled
[2025-07-27 21:06:52] 2025-07-28 01:06:33,268 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 21:06:52] 2025-07-28 01:06:33,308 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140437691062080)>', '<ExcThread(monitor, started 140436899358464)>']
[2025-07-27 21:06:52] 2025-07-28 01:06:38,334 | INFO     | all workflow threads have been joined
[2025-07-27 21:06:52] 2025-07-28 01:06:38,334 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 21:06:52] 2025-07-28 01:06:38,334 | INFO     | traces error code: 0
[2025-07-27 21:06:52] 2025-07-28 01:06:38,334 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 21:06:52] 2025-07-28 01:06:52,605 | INFO     | PID=53370 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 21:06:52] 2025-07-28 01:06:52,605 | INFO     | .. there are 9 such processes running
[2025-07-27 21:06:52] 2025-07-28 01:06:52,606 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 21:06:52] 2025-07-28 01:06:52,606 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 21:06:52] 2025-07-28 01:06:52,606 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 21:06:52] 2025-07-28 01:06:52,606 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 21:06:52] 2025-07-28 01:06:52,606 | INFO     | [monitor] control thread has ended
[2025-07-27 21:06:52] 2025-07-28 01:06:52,709 [wrapper] ==== pilot stdout END ====
[2025-07-27 21:06:52] 2025-07-28 01:06:52,711 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 21:06:52] 2025-07-28 01:06:52,721 [wrapper] pilotpid: 53370
[2025-07-27 21:06:52] 2025-07-28 01:06:52,727 [wrapper] Pilot exit status: 0
[2025-07-27 21:06:52] 2025-07-28 01:06:52,749 [wrapper] pandaids: 6747579354
[2025-07-27 21:06:52] 2025-07-28 01:06:52,830 [wrapper] cleanup supervisor_pilot  552768 53371
[2025-07-27 21:06:52] 2025-07-28 01:06:52,837 [wrapper] Test setup, not cleaning
[2025-07-27 21:06:52] 2025-07-28 01:06:52,843 [wrapper] apfmon messages muted
[2025-07-27 21:06:52] 2025-07-28 01:06:52,851 [wrapper] ==== wrapper stdout END ====
[2025-07-27 21:06:52] 2025-07-28 01:06:52,854 [wrapper] ==== wrapper stderr END ====
[2025-07-27 21:06:52]  *** Error codes and diagnostics ***
[2025-07-27 21:06:52]     "exeErrorCode": 0,
[2025-07-27 21:06:52]     "exeErrorDiag": "",
[2025-07-27 21:06:52]     "pilotErrorCode": 0,
[2025-07-27 21:06:52]     "pilotErrorDiag": "",
[2025-07-27 21:06:52]  *** Listing of results directory ***
[2025-07-27 21:06:53] total 356148
[2025-07-27 21:06:53] -rwx------. 1 boincer umatlas     36292 Jul 27 14:08 runpilot2-wrapper.sh
[2025-07-27 21:06:53] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 14:08 queuedata.json
[2025-07-27 21:06:53] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 14:08 pilot3.tar.gz
[2025-07-27 21:06:53] -rw-r--r--. 1 boincer umatlas       100 Jul 27 19:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 21:06:53] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 19:28 run_atlas
[2025-07-27 21:06:53] -rw-r--r--. 1 boincer umatlas       105 Jul 27 19:28 job.xml
[2025-07-27 21:06:53] -rw-r--r--. 2 boincer umatlas 144725405 Jul 27 19:28 EVNT.45743347._002931.pool.root.1
[2025-07-27 21:06:53] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 19:28 start_atlas.sh
[2025-07-27 21:06:53] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 19:28 shared
[2025-07-27 21:06:53] -rw-r--r--. 2 boincer umatlas    542885 Jul 27 19:28 input.tar.gz
[2025-07-27 21:06:53] -rw-r--r--. 1 boincer umatlas         0 Jul 27 19:28 boinc_lockfile
[2025-07-27 21:06:53] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 19:28 pandaJob.out
[2025-07-27 21:06:53] -rw-------. 1 boincer umatlas    980125 Jul 27 19:28 agis_schedconf.cvmfs.json
[2025-07-27 21:06:53] -rw-------. 1 boincer umatlas   1593052 Jul 27 19:28 agis_ddmendpoints.agis.ALL.json
[2025-07-27 21:06:53] drwx------. 4 boincer umatlas      4096 Jul 27 19:28 pilot3
[2025-07-27 21:06:53] -rw-r--r--. 1 boincer umatlas      6896 Jul 27 21:02 init_data.xml
[2025-07-27 21:06:53] -rw-------. 1 boincer umatlas 214352681 Jul 27 21:05 HITS.45743349._053540.pool.root.1
[2025-07-27 21:06:53] -rw-r--r--. 1 boincer umatlas       529 Jul 27 21:05 boinc_task_state.xml
[2025-07-27 21:06:53] -rw-------. 1 boincer umatlas      1029 Jul 27 21:06 memory_monitor_summary.json
[2025-07-27 21:06:53] -rw-------. 1 boincer umatlas    315188 Jul 27 21:06 log.45743349._053540.job.log.tgz.1
[2025-07-27 21:06:53] -rw-------. 1 boincer umatlas      7776 Jul 27 21:06 heartbeat.json
[2025-07-27 21:06:53] -rw-r--r--. 1 boincer umatlas        27 Jul 27 21:06 wrapper_checkpoint.txt
[2025-07-27 21:06:53] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 21:06 boinc_mmap_file
[2025-07-27 21:06:53] -rw-------. 1 boincer umatlas       820 Jul 27 21:06 pilotlog.txt
[2025-07-27 21:06:53] -rw-------. 1 boincer umatlas        95 Jul 27 21:06 pilot_heartbeat.json
[2025-07-27 21:06:53] -rw-------. 1 boincer umatlas    556785 Jul 27 21:06 log.45743349._053540.job.log.1
[2025-07-27 21:06:53] -rw-------. 1 boincer umatlas       357 Jul 27 21:06 output.list
[2025-07-27 21:06:53] -rw-r--r--. 1 boincer umatlas       620 Jul 27 21:06 runtime_log
[2025-07-27 21:06:53] -rw-------. 1 boincer umatlas    890880 Jul 27 21:06 result.tar.gz
[2025-07-27 21:06:53] -rw-------. 1 boincer umatlas       652 Jul 27 21:06 tjUMDmtyK07n9Rq4apOajLDm4fhM0noT9bVof3QYDm0t2KDmRC0Eon.diag
[2025-07-27 21:06:53] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 21:06 runtime_log.err
[2025-07-27 21:06:53] -rw-r--r--. 1 boincer umatlas     21842 Jul 27 21:06 stderr.txt
[2025-07-27 21:06:53] HITS file was successfully produced:
[2025-07-27 21:06:53] -rw-------. 1 boincer umatlas 214352681 Jul 27 21:05 shared/HITS.pool.root.1
[2025-07-27 21:06:53]  *** Contents of shared directory: ***
[2025-07-27 21:06:53] total 352092
[2025-07-27 21:06:53] -rw-r--r--. 2 boincer umatlas 144725405 Jul 27 19:28 ATLAS.root_0
[2025-07-27 21:06:53] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 19:28 start_atlas.sh
[2025-07-27 21:06:53] -rw-r--r--. 2 boincer umatlas    542885 Jul 27 19:28 input.tar.gz
[2025-07-27 21:06:53] -rw-------. 1 boincer umatlas 214352681 Jul 27 21:05 HITS.pool.root.1
[2025-07-27 21:06:53] -rw-------. 1 boincer umatlas    890880 Jul 27 21:06 result.tar.gz
21:06:54 (49131): run_atlas exited; CPU time 37719.416889
21:06:54 (49131): called boinc_finish(0)

</stderr_txt>
]]>

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