Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:59:13 (1933405): wrapper (7.7.26015): starting
11:59:13 (1933405): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 11:59:13] Arguments: --nthreads 12
[2025-07-28 11:59:13] Threads: 12
[2025-07-28 11:59:13] Checking for CVMFS
[2025-07-28 11:59:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 11:59:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 11:59:14] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 11:59:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 11:59:15] 2.13.1.0 3863 5473 155140 148843 0 787 37069989 46080000 49031 130560 0 33449189 99.939 6125063 21044 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-07-28 11:59:15] CVMFS is ok
[2025-07-28 11:59:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 11:59:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 11:59:15] Further information can be found at the LHC@home message board.
[2025-07-28 11:59:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 11:59:15] Checking for apptainer binary...
[2025-07-28 11:59:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 11:59:15] Running /usr/bin/apptainer --version
[2025-07-28 11:59:15] apptainer version 1.4.1-1.el9
[2025-07-28 11:59:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 11:59:15] mff2103.farm.particle.cz
[2025-07-28 11:59:15] apptainer works
[2025-07-28 11:59:15] Set ATHENA_PROC_NUMBER=12
[2025-07-28 11:59:15] Set ATHENA_CORE_NUMBER=12
[2025-07-28 11:59:16] Starting ATLAS job with PandaID=6747578704
[2025-07-28 11:59:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 14:39:38]  *** The last 200 lines of the pilot log: ***
[2025-07-28 14:39:38] 2025-07-28 12:18:16,322 | INFO     | sum of square deviations: 697051760.9312986
[2025-07-28 14:39:38] 2025-07-28 12:18:16,323 | INFO     | sum of deviations: 57787846552.473236
[2025-07-28 14:39:38] 2025-07-28 12:18:16,323 | INFO     | mean x: 1753701011.0229008
[2025-07-28 14:39:38] 2025-07-28 12:18:16,323 | INFO     | mean y: 2546743.175572519
[2025-07-28 14:39:38] 2025-07-28 12:18:16,323 | INFO     | -- intersect: -145384941825.1187
[2025-07-28 14:39:38] 2025-07-28 12:18:16,323 | INFO     | intersect: -145384941825.1187
[2025-07-28 14:39:38] 2025-07-28 12:18:16,323 | INFO     | chi2: 5.976514343057255
[2025-07-28 14:39:38] 2025-07-28 12:18:16,324 | INFO     | sum of square deviations: 620241933.4285722
[2025-07-28 14:39:38] 2025-07-28 12:18:16,324 | INFO     | sum of deviations: 65171116457.9524
[2025-07-28 14:39:38] 2025-07-28 12:18:16,324 | INFO     | mean x: 1753700858.5238094
[2025-07-28 14:39:38] 2025-07-28 12:18:16,324 | INFO     | mean y: 2560792.1825396824
[2025-07-28 14:39:38] 2025-07-28 12:18:16,324 | INFO     | -- intersect: -184265281679.36838
[2025-07-28 14:39:38] 2025-07-28 12:18:16,325 | INFO     | intersect: -184265281679.36838
[2025-07-28 14:39:38] 2025-07-28 12:18:16,325 | INFO     | chi2: 5.1500534647420855
[2025-07-28 14:39:38] 2025-07-28 12:18:16,325 | INFO     | current chi2=5.1500534647420855 (change=13.828476447567564 %)
[2025-07-28 14:39:38] 2025-07-28 12:18:16,325 | INFO     | right removable region: 125
[2025-07-28 14:39:38] 2025-07-28 12:18:16,325 | INFO     | sum of square deviations: 620240103.4285722
[2025-07-28 14:39:38] 2025-07-28 12:18:16,331 | INFO     | sum of deviations: 12791902709.809523
[2025-07-28 14:39:38] 2025-07-28 12:18:16,331 | INFO     | mean x: 1753701163.5238094
[2025-07-28 14:39:38] 2025-07-28 12:18:16,331 | INFO     | mean y: 2635877.396825397
[2025-07-28 14:39:38] 2025-07-28 12:18:16,331 | INFO     | -- intersect: -36165897150.16767
[2025-07-28 14:39:38] 2025-07-28 12:18:16,331 | INFO     | intersect: -36165897150.16767
[2025-07-28 14:39:38] 2025-07-28 12:18:16,331 | INFO     | chi2: 1.604702539535959
[2025-07-28 14:39:38] 2025-07-28 12:18:16,332 | INFO     | current chi2=1.604702539535959 (change=73.14985880691317 %)
[2025-07-28 14:39:38] 2025-07-28 12:18:16,332 | INFO     | sum of square deviations: 549289020.9256189
[2025-07-28 14:39:38] 2025-07-28 12:18:16,332 | INFO     | sum of deviations: -2217284199.8512373
[2025-07-28 14:39:38] 2025-07-28 12:18:16,332 | INFO     | mean x: 1753701316.0247934
[2025-07-28 14:39:38] 2025-07-28 12:18:16,333 | INFO     | mean y: 2667788.9504132234
[2025-07-28 14:39:38] 2025-07-28 12:18:16,333 | INFO     | -- intersect: 7081735585.950209
[2025-07-28 14:39:38] 2025-07-28 12:18:16,333 | INFO     | intersect: 7081735585.950209
[2025-07-28 14:39:38] 2025-07-28 12:18:16,333 | INFO     | chi2: 1.0561374836515798
[2025-07-28 14:39:38] 2025-07-28 12:18:16,333 | INFO     | current chi2=1.0561374836515798 (change=34.1848437557163 %)
[2025-07-28 14:39:38] 2025-07-28 12:18:16,333 | INFO     | sum of square deviations: 483965950.92241406
[2025-07-28 14:39:38] 2025-07-28 12:18:16,334 | INFO     | sum of deviations: -9660466550.612068
[2025-07-28 14:39:38] 2025-07-28 12:18:16,334 | INFO     | mean x: 1753701468.525862
[2025-07-28 14:39:38] 2025-07-28 12:18:16,334 | INFO     | mean y: 2685078.370689655
[2025-07-28 14:39:38] 2025-07-28 12:18:16,334 | INFO     | -- intersect: 35008400551.0472
[2025-07-28 14:39:38] 2025-07-28 12:18:16,334 | INFO     | intersect: 35008400551.0472
[2025-07-28 14:39:38] 2025-07-28 12:18:16,334 | INFO     | chi2: 0.916935475772692
[2025-07-28 14:39:38] 2025-07-28 12:18:16,334 | INFO     | current chi2=0.916935475772692 (change=13.180292342015825 %)
[2025-07-28 14:39:38] 2025-07-28 12:18:16,334 | INFO     | left removable region: 30
[2025-07-28 14:39:38] 2025-07-28 12:18:16,335 | INFO     | sum of square deviations: 265820678.90526336
[2025-07-28 14:39:38] 2025-07-28 12:18:16,335 | INFO     | sum of deviations: -991098771.9789475
[2025-07-28 14:39:38] 2025-07-28 12:18:16,335 | INFO     | mean x: 1753701743.031579
[2025-07-28 14:39:38] 2025-07-28 12:18:16,335 | INFO     | mean y: 2708202.3263157895
[2025-07-28 14:39:38] 2025-07-28 12:18:16,335 | INFO     | -- intersect: 6541295234.358468
[2025-07-28 14:39:38] 2025-07-28 12:18:16,335 | INFO     | intersect: 6541295234.358468
[2025-07-28 14:39:38] 2025-07-28 12:18:16,335 | INFO     | chi2: 0.0008175065567287687
[2025-07-28 14:39:38] 2025-07-28 12:18:16,340 | INFO     | -- intersect: 6541295234.358468
[2025-07-28 14:39:38] 2025-07-28 12:18:16,340 | INFO     | current memory leak: -3.73 B/s (using 95 data points, chi2=0.00)
[2025-07-28 14:39:38] 2025-07-28 12:18:16,340 | INFO     | could have reported an average CPU frequency of 2763 MHz (8 samples)
[2025-07-28 14:39:38] 2025-07-28 12:18:16,340 | INFO     | ..............................
[2025-07-28 14:39:38] 2025-07-28 12:18:16,341 | INFO     | . Timing measurements:
[2025-07-28 14:39:38] 2025-07-28 12:18:16,341 | INFO     | . get job = 0 s
[2025-07-28 14:39:38] 2025-07-28 12:18:16,341 | INFO     | . initial setup = 6 s
[2025-07-28 14:39:38] 2025-07-28 12:18:16,341 | INFO     | . payload setup = 76 s
[2025-07-28 14:39:38] 2025-07-28 12:18:16,341 | INFO     | . stage-in = 0 s
[2025-07-28 14:39:38] 2025-07-28 12:18:16,341 | INFO     | . payload execution = 8029 s
[2025-07-28 14:39:38] 2025-07-28 12:18:16,341 | INFO     | . stage-out = 2 s
[2025-07-28 14:39:38] 2025-07-28 12:18:16,341 | INFO     | . log creation = 0 s
[2025-07-28 14:39:38] 2025-07-28 12:18:16,341 | INFO     | ..............................
[2025-07-28 14:39:38] 2025-07-28 12:18:16,501 | INFO     | 
[2025-07-28 14:39:38] 2025-07-28 12:18:16,501 | INFO     | job summary report
[2025-07-28 14:39:38] 2025-07-28 12:18:16,501 | INFO     | --------------------------------------------------
[2025-07-28 14:39:38] 2025-07-28 12:18:16,501 | INFO     | PanDA job id: 6747578704
[2025-07-28 14:39:38] 2025-07-28 12:18:16,501 | INFO     | task id: 45743349
[2025-07-28 14:39:38] 2025-07-28 12:18:16,501 | INFO     | errors: (none)
[2025-07-28 14:39:38] 2025-07-28 12:18:16,501 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 14:39:38] 2025-07-28 12:18:16,501 | INFO     | pilot state: finished 
[2025-07-28 14:39:38] 2025-07-28 12:18:16,501 | INFO     | transexitcode: 0
[2025-07-28 14:39:38] 2025-07-28 12:18:16,501 | INFO     | exeerrorcode: 0
[2025-07-28 14:39:38] 2025-07-28 12:18:16,502 | INFO     | exeerrordiag: 
[2025-07-28 14:39:38] 2025-07-28 12:18:16,502 | INFO     | exitcode: 0
[2025-07-28 14:39:38] 2025-07-28 12:18:16,502 | INFO     | exitmsg: OK
[2025-07-28 14:39:38] 2025-07-28 12:18:16,502 | INFO     | cpuconsumptiontime: 45365 s
[2025-07-28 14:39:38] 2025-07-28 12:18:16,502 | INFO     | nevents: 400
[2025-07-28 14:39:38] 2025-07-28 12:18:16,502 | INFO     | neventsw: 0
[2025-07-28 14:39:38] 2025-07-28 12:18:16,502 | INFO     | pid: 1966020
[2025-07-28 14:39:38] 2025-07-28 12:18:16,502 | INFO     | pgrp: 1966020
[2025-07-28 14:39:38] 2025-07-28 12:18:16,502 | INFO     | corecount: 12
[2025-07-28 14:39:38] 2025-07-28 12:18:16,502 | INFO     | event service: False
[2025-07-28 14:39:38] 2025-07-28 12:18:16,502 | INFO     | sizes: {0: 2397305, 1: 2397504, 12: 2397504, 22: 2397532, 33: 2397560, 43: 2397878, 44: 2398034, 8110: 2425924, 8111: 2425923, 8115: 2434979, 8118: 2435035, 8169: 
[2025-07-28 14:39:38] 2025-07-28 12:18:16,502 | INFO     | --------------------------------------------------
[2025-07-28 14:39:38] 2025-07-28 12:18:16,502 | INFO     | 
[2025-07-28 14:39:38] 2025-07-28 12:18:16,503 | INFO     | executing command: ls -lF /scratch/.boinc/slots/7
[2025-07-28 14:39:38] 2025-07-28 12:18:16,670 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 14:39:38] 2025-07-28 12:18:16,670 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 14:39:38] 2025-07-28 12:18:16,670 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 14:39:38] 2025-07-28 12:18:16,670 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 14:39:38] 2025-07-28 12:18:16,674 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 14:39:38] 2025-07-28 12:18:16,674 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 14:39:38] 2025-07-28 12:18:16,674 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 14:39:38] 2025-07-28 12:18:16,674 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 14:39:38] 2025-07-28 12:18:16,674 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 14:39:38] 2025-07-28 12:18:16,674 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 14:39:38] 2025-07-28 12:18:16,674 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 14:39:38] 2025-07-28 12:18:16,674 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 14:39:38] 2025-07-28 12:18:16,674 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 14:39:38] 2025-07-28 12:18:16,675 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 14:39:38] 2025-07-28 12:18:16,675 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 14:39:38] 2025-07-28 12:18:16,675 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 14:39:38] 2025-07-28 12:18:16,675 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 14:39:38] 2025-07-28 12:18:16,675 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 14:39:38] 2025-07-28 12:18:16,675 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 14:39:38] 2025-07-28 12:18:16,675 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 14:39:38] 2025-07-28 12:18:16,675 | INFO     | job 6747578704 has completed (purged errors)
[2025-07-28 14:39:38] 2025-07-28 12:18:16,675 | INFO     | overall cleanup function is called
[2025-07-28 14:39:38] 2025-07-28 12:18:17,697 | INFO     | --- collectZombieJob: --- 10, [1966020]
[2025-07-28 14:39:38] 2025-07-28 12:18:17,697 | INFO     | zombie collector waiting for pid 1966020
[2025-07-28 14:39:38] 2025-07-28 12:18:17,697 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 14:39:38] 2025-07-28 12:18:17,697 | INFO     | collected zombie processes
[2025-07-28 14:39:38] 2025-07-28 12:18:17,697 | INFO     | will attempt to kill all subprocesses of pid=1966020
[2025-07-28 14:39:38] 2025-07-28 12:18:18,539 | INFO     | PID=1946802 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 14:39:38] 2025-07-28 12:18:18,539 | INFO     | .. there are 74 such processes running
[2025-07-28 14:39:38] 2025-07-28 12:18:18,978 | INFO     | process IDs to be killed: [1966020] (in reverse order)
[2025-07-28 14:39:38] 2025-07-28 12:18:19,732 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 14:39:38] 2025-07-28 12:18:19,732 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 14:39:38] 2025-07-28 12:18:19,787 | INFO     | did not find any defunct processes belonging to 1966020
[2025-07-28 14:39:38] 2025-07-28 12:18:19,848 | INFO     | did not find any defunct processes belonging to 1966020
[2025-07-28 14:39:38] 2025-07-28 12:18:19,848 | INFO     | ready for new job
[2025-07-28 14:39:38] 2025-07-28 12:18:19,849 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 14:39:38] 2025-07-28 12:18:19,850 | INFO     | ***************************************
[2025-07-28 14:39:38] 2025-07-28 12:18:19,851 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 14:39:38] 2025-07-28 12:18:19,851 | INFO     | ***************************************
[2025-07-28 14:39:38] 2025-07-28 12:18:19,851 | INFO     | 
[2025-07-28 14:39:38] 2025-07-28 12:18:19,861 | INFO     | architecture information:
[2025-07-28 14:39:38] 2025-07-28 12:18:19,875 | INFO     | executing command: cat /etc/os-release
[2025-07-28 14:39:38] 2025-07-28 12:18:19,983 | INFO     | cat /etc/os-release:
[2025-07-28 14:39:38] NAME="CentOS Linux"
[2025-07-28 14:39:38] VERSION="7 (Core)"
[2025-07-28 14:39:38] ID="centos"
[2025-07-28 14:39:38] ID_LIKE="rhel fedora"
[2025-07-28 14:39:38] VERSION_ID="7"
[2025-07-28 14:39:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 14:39:38] ANSI_COLOR="0;31"
[2025-07-28 14:39:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 14:39:38] HOME_URL="https://www.centos.org/"
[2025-07-28 14:39:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 14:39:38] 
[2025-07-28 14:39:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 14:39:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 14:39:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 14:39:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 14:39:38] 
[2025-07-28 14:39:38] 2025-07-28 12:18:19,985 | INFO     | ***************************************
[2025-07-28 14:39:38] 2025-07-28 12:18:20,490 | INFO     | executing command: df -mP /scratch/.boinc/slots/7
[2025-07-28 14:39:38] 2025-07-28 12:18:20,616 | INFO     | sufficient remaining disk space (1544430813184 B)
[2025-07-28 14:39:38] 2025-07-28 12:18:20,616 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 14:39:38] 2025-07-28 12:18:20,617 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 14:39:38] 2025-07-28 12:18:20,617 | INFO     | update_server=False
[2025-07-28 14:39:38] 2025-07-28 12:18:20,617 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 14:39:38] 2025-07-28 12:18:20,618 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 14:39:38] 2025-07-28 12:18:20,725 | INFO     | all data control threads have been joined
[2025-07-28 14:39:38] 2025-07-28 12:18:20,886 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-28 14:39:38] 2025-07-28 12:18:20,886 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-28 14:39:38] 2025-07-28 12:18:20,886 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 14:39:38] 2025-07-28 12:18:20,886 | INFO     | will abort loop
[2025-07-28 14:39:38] 2025-07-28 12:18:21,109 | INFO     | all job control threads have been joined
[2025-07-28 14:39:38] 2025-07-28 12:18:21,127 | INFO     | all payload control threads have been joined
[2025-07-28 14:39:38] 2025-07-28 12:18:21,361 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 14:39:38] 2025-07-28 12:18:21,532 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 14:39:38] 2025-07-28 12:18:21,623 | INFO     | [job] retrieve thread has finished
[2025-07-28 14:39:38] 2025-07-28 12:18:21,731 | INFO     | [data] control thread has finished
[2025-07-28 14:39:38] 2025-07-28 12:18:21,788 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 14:39:38] 2025-07-28 12:18:21,869 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 14:39:38] 2025-07-28 12:18:21,893 | INFO     | [job] job monitor thread has finished
[2025-07-28 14:39:38] 2025-07-28 12:18:22,114 | INFO     | [job] control thread has finished
[2025-07-28 14:39:38] 2025-07-28 12:18:22,132 | INFO     | [payload] control thread has finished
[2025-07-28 14:39:38] 2025-07-28 12:18:22,330 | INFO     | [job] validate thread has finished
[2025-07-28 14:39:38] 2025-07-28 12:18:22,331 | INFO     | [data] copytool_in thread has finished
[2025-07-28 14:39:38] 2025-07-28 12:18:22,538 | INFO     | [job] queue monitor thread has finished
[2025-07-28 14:39:38] 2025-07-28 12:18:22,614 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 14:39:38] 2025-07-28 12:18:22,619 | INFO     | [payload] validate_post thread has finished
[2025-07-28 14:39:38] 2025-07-28 12:18:22,625 | INFO     | [data] copytool_out thread has finished
[2025-07-28 14:39:38] 2025-07-28 12:18:22,852 | INFO     | [payload] failed_post thread has finished
[2025-07-28 14:39:38] 2025-07-28 12:18:23,106 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 14:39:38] 2025-07-28 12:18:25,369 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 14:39:38] 2025-07-28 12:18:26,950 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139981530933056)>', '<ExcThread(monitor, started 139980903020288)>']
[2025-07-28 14:39:38] 2025-07-28 12:18:31,976 | INFO     | all workflow threads have been joined
[2025-07-28 14:39:38] 2025-07-28 12:18:31,976 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 14:39:38] 2025-07-28 12:18:31,976 | INFO     | traces error code: 0
[2025-07-28 14:39:38] 2025-07-28 12:18:31,976 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 14:39:38] 2025-07-28 12:18:51,545 | INFO     | PID=1946802 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 14:39:38] 2025-07-28 12:18:51,545 | INFO     | .. there are 74 such processes running
[2025-07-28 14:39:38] 2025-07-28 12:18:51,546 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 14:39:38] 2025-07-28 12:18:51,546 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 14:39:38] 2025-07-28 12:18:51,546 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 14:39:38] 2025-07-28 12:18:51,546 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 14:39:38] 2025-07-28 12:18:51,546 | CRITICAL | thread 'MainThread' is not alive
[2025-07-28 14:39:38] 2025-07-28 12:18:51,546 | INFO     | [monitor] control thread has ended
[2025-07-28 14:39:38] 2025-07-28 12:18:52,069 [wrapper] ==== pilot stdout END ====
[2025-07-28 14:39:38] 2025-07-28 12:18:52,118 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 14:39:38] 2025-07-28 12:18:52,164 [wrapper] pilotpid: 1946802
[2025-07-28 14:39:38] 2025-07-28 12:18:52,212 [wrapper] Pilot exit status: 0
[2025-07-28 14:39:38] 2025-07-28 12:18:52,375 [wrapper] pandaids: 6747578704
[2025-07-28 14:39:38] 2025-07-28 12:18:52,823 [wrapper] cleanup supervisor_pilot 2375922 1946803
[2025-07-28 14:39:38] 2025-07-28 12:18:52,862 [wrapper] Test setup, not cleaning
[2025-07-28 14:39:38] 2025-07-28 12:18:52,904 [wrapper] apfmon messages muted
[2025-07-28 14:39:38] 2025-07-28 12:18:52,943 [wrapper] ==== wrapper stdout END ====
[2025-07-28 14:39:38] 2025-07-28 12:18:52,987 [wrapper] ==== wrapper stderr END ====
[2025-07-28 14:39:38]  *** Error codes and diagnostics ***
[2025-07-28 14:39:38]     "exeErrorCode": 0,
[2025-07-28 14:39:38]     "exeErrorDiag": "",
[2025-07-28 14:39:38]     "pilotErrorCode": 0,
[2025-07-28 14:39:38]     "pilotErrorDiag": "",
[2025-07-28 14:39:38]  *** Listing of results directory ***
[2025-07-28 14:39:38] total 352712
[2025-07-28 14:39:38] -rw-r--r-- 1 boinc boinc    530466 Jul 27 19:39 pilot3.tar.gz
[2025-07-28 14:39:38] -rwx------ 1 boinc boinc     36292 Jul 27 20:02 runpilot2-wrapper.sh
[2025-07-28 14:39:38] -rw-r--r-- 1 boinc boinc      5112 Jul 27 20:02 queuedata.json
[2025-07-28 14:39:38] -rw-r--r-- 1 boinc boinc       100 Jul 28 11:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 14:39:38] -rwxr-xr-x 1 boinc boinc      7986 Jul 28 11:59 run_atlas
[2025-07-28 14:39:38] -rw-r--r-- 1 boinc boinc       105 Jul 28 11:59 job.xml
[2025-07-28 14:39:38] -rw-r--r-- 2 boinc boinc 143653199 Jul 28 11:59 EVNT.45743347._002919.pool.root.1
[2025-07-28 14:39:38] -rw-r--r-- 1 boinc boinc      6664 Jul 28 11:59 init_data.xml
[2025-07-28 14:39:38] drwxrwx--x 2 boinc boinc      4096 Jul 28 11:59 shared
[2025-07-28 14:39:38] -rw-r--r-- 2 boinc boinc    542905 Jul 28 11:59 input.tar.gz
[2025-07-28 14:39:38] -rw-r--r-- 2 boinc boinc     15095 Jul 28 11:59 start_atlas.sh
[2025-07-28 14:39:38] -rw-r--r-- 1 boinc boinc         0 Jul 28 11:59 boinc_lockfile
[2025-07-28 14:39:38] -rw-r--r-- 1 boinc boinc      2563 Jul 28 11:59 pandaJob.out
[2025-07-28 14:39:38] -rw------- 1 boinc boinc    978460 Jul 28 12:00 agis_schedconf.cvmfs.json
[2025-07-28 14:39:38] -rw------- 1 boinc boinc   1593052 Jul 28 12:00 agis_ddmendpoints.agis.ALL.json
[2025-07-28 14:39:38] drwx------ 4 boinc boinc      4096 Jul 28 12:00 pilot3
[2025-07-28 14:39:38] -rw------- 1 boinc boinc 211377627 Jul 28 14:16 HITS.45743349._053355.pool.root.1
[2025-07-28 14:39:38] -rw-r--r-- 1 boinc boinc       529 Jul 28 14:16 boinc_task_state.xml
[2025-07-28 14:39:38] -rw------- 1 boinc boinc      1027 Jul 28 14:17 memory_monitor_summary.json
[2025-07-28 14:39:38] -rw------- 1 boinc boinc    399255 Jul 28 14:17 log.45743349._053355.job.log.tgz.1
[2025-07-28 14:39:38] -rw------- 1 boinc boinc        95 Jul 28 14:18 pilot_heartbeat.json
[2025-07-28 14:39:38] -rw------- 1 boinc boinc      7780 Jul 28 14:18 heartbeat.json
[2025-07-28 14:39:38] -rw------- 1 boinc boinc       893 Jul 28 14:18 pilotlog.txt
[2025-07-28 14:39:38] -rw------- 1 boinc boinc    734274 Jul 28 14:18 log.45743349._053355.job.log.1
[2025-07-28 14:39:38] -rw------- 1 boinc boinc       357 Jul 28 14:18 output.list
[2025-07-28 14:39:38] -rw-r--r-- 1 boinc boinc       620 Jul 28 14:18 runtime_log
[2025-07-28 14:39:38] -rw------- 1 boinc boinc   1157120 Jul 28 14:18 result.tar.gz
[2025-07-28 14:39:38] -rw-r--r-- 1 boinc boinc      8721 Jul 28 14:18 runtime_log.err
[2025-07-28 14:39:38] -rw------- 1 boinc boinc       664 Jul 28 14:18 aPwNDmasK07n9Rq4apOajLDm4fhM0noT9bVof3QYDm3s2KDmwICC7n.diag
[2025-07-28 14:39:38] -rw-r--r-- 1 boinc boinc        26 Jul 28 14:39 wrapper_checkpoint.txt
[2025-07-28 14:39:38] -rw-r--r-- 1 boinc boinc      8192 Jul 28 14:39 boinc_mmap_file
[2025-07-28 14:39:38] -rw-r--r-- 1 boinc boinc     21198 Jul 28 14:39 stderr.txt
[2025-07-28 14:39:38] HITS file was successfully produced:
[2025-07-28 14:39:38] -rw------- 1 boinc boinc 211377627 Jul 28 14:16 shared/HITS.pool.root.1
[2025-07-28 14:39:38]  *** Contents of shared directory: ***
[2025-07-28 14:39:38] total 348400
[2025-07-28 14:39:38] -rw-r--r-- 2 boinc boinc 143653199 Jul 28 11:59 ATLAS.root_0
[2025-07-28 14:39:38] -rw-r--r-- 2 boinc boinc    542905 Jul 28 11:59 input.tar.gz
[2025-07-28 14:39:38] -rw-r--r-- 2 boinc boinc     15095 Jul 28 11:59 start_atlas.sh
[2025-07-28 14:39:38] -rw------- 1 boinc boinc 211377627 Jul 28 14:16 HITS.pool.root.1
[2025-07-28 14:39:38] -rw------- 1 boinc boinc   1157120 Jul 28 14:18 result.tar.gz
14:39:40 (1933405): run_atlas exited; CPU time 45797.897568
14:39:40 (1933405): called boinc_finish(0)

</stderr_txt>
]]>

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