Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:29:38 (3971400): wrapper (7.7.26015): starting
19:29:38 (3971400): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 19:29:38] Arguments: --nthreads 8
[2025-07-27 19:29:38] Threads: 8
[2025-07-27 19:29:38] Checking for CVMFS
[2025-07-27 19:29:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 19:29:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 19:29:38] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 19:29:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 19:29:38] 2.13.1.0 116762 9055 206700 148828 1 188 34996793 40960001 12916 16776704 0 126995707 99.999 347565 39352 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 19:29:38] CVMFS is ok
[2025-07-27 19:29:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 19:29:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 19:29:38] Further information can be found at the LHC@home message board.
[2025-07-27 19:29:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 19:29:38] Checking for apptainer binary...
[2025-07-27 19:29:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 19:29:38] Running /usr/bin/apptainer --version
[2025-07-27 19:29:38] apptainer version 1.4.1-1.el9
[2025-07-27 19:29:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 19:29:38] c-208-39.aglt2.org
[2025-07-27 19:29:38] apptainer works
[2025-07-27 19:29:38] Set ATHENA_PROC_NUMBER=8
[2025-07-27 19:29:38] Set ATHENA_CORE_NUMBER=8
[2025-07-27 19:29:38] Starting ATLAS job with PandaID=6747578698
[2025-07-27 19:29:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 20:27:49]  *** The last 200 lines of the pilot log: ***
[2025-07-27 20:27:49]  protocol_id=None
[2025-07-27 20:27:49]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 20:27:49]  replicas=None
[2025-07-27 20:27:49]  scope=mc23_13p6TeV
[2025-07-27 20:27:49]  status=None
[2025-07-27 20:27:49]  status_code=0
[2025-07-27 20:27:49]  storage_token=
[2025-07-27 20:27:49]  surl=/tmp/boinchome/slots/10/PanDA_Pilot-6747578698/log.45743349._053352.job.log.tgz.1
[2025-07-27 20:27:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/da/25/log.45743349._053352.job.log.tgz.1
[2025-07-27 20:27:49]  workdir=None
[2025-07-27 20:27:49] ]
[2025-07-27 20:27:49] 2025-07-28 00:27:10,634 | INFO     | transferring file log.45743349._053352.job.log.tgz.1 from /tmp/boinchome/slots/10/PanDA_Pilot-6747578698/log.45743349._053352.job.log.tgz.1 to /tmp/boinchome/slots
[2025-07-27 20:27:49] 2025-07-28 00:27:10,634 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/10/PanDA_Pilot-6747578698/log.45743349._053352.job.log.tgz.1 /tmp/boinchome/slots/10/log.45743349._053352.j
[2025-07-27 20:27:49] 2025-07-28 00:27:10,649 | INFO     | adding to output.list: log.45743349._053352.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/da/25/log.45743349._053352.job.log.tg
[2025-07-27 20:27:49] 2025-07-28 00:27:10,650 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 20:27:49] 2025-07-28 00:27:10,650 | INFO     | summary of transferred files:
[2025-07-27 20:27:49] 2025-07-28 00:27:10,650 | INFO     |  -- lfn=log.45743349._053352.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 20:27:49] 2025-07-28 00:27:10,650 | INFO     | stage-out finished correctly
[2025-07-27 20:27:49] 2025-07-28 00:27:11,292 | INFO     | monitor loop #250: job 0:6747578698 is in state 'finished'
[2025-07-27 20:27:49] 2025-07-28 00:27:11,292 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:27:49] 2025-07-28 00:27:12,217 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 20:27:49] 2025-07-28 00:27:12,563 | INFO     | PID=3975060 has CPU usage=11.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-27 20:27:49] 2025-07-28 00:27:12,563 | INFO     | .. there are 16 such processes running
[2025-07-27 20:27:49] 2025-07-28 00:27:12,921 | INFO     | job 6747578698 has state=finished
[2025-07-27 20:27:49] 2025-07-28 00:27:12,921 | INFO     | preparing for final server update for job 6747578698 in state='finished'
[2025-07-27 20:27:49] 2025-07-28 00:27:12,921 | INFO     | this job has now completed (state=finished)
[2025-07-27 20:27:49] 2025-07-28 00:27:12,921 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 20:27:49] 2025-07-28 00:27:12,921 | INFO     | log transfer has been attempted: DONE
[2025-07-27 20:27:49] 2025-07-28 00:27:12,922 | INFO     | job 6747578698 has finished - writing final server update
[2025-07-27 20:27:49] 2025-07-28 00:27:12,922 | INFO     | total number of processed events: 400 (read)
[2025-07-27 20:27:49] 2025-07-28 00:27:12,922 | INFO     | executing command: lscpu
[2025-07-27 20:27:49] 2025-07-28 00:27:12,980 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 20:27:49] 2025-07-28 00:27:13,795 | INFO     | monitor loop #251: job 0:6747578698 is in state 'finished'
[2025-07-27 20:27:49] 2025-07-28 00:27:13,796 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:27:49] 2025-07-28 00:27:16,169 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 20:27:49] 2025-07-28 00:27:16,174 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3705.3782343750013
[2025-07-27 20:27:49] 2025-07-28 00:27:16,187 | INFO     | using path: /tmp/boinchome/slots/10/PanDA_Pilot-6747578698/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 20:27:49] 2025-07-28 00:27:16,188 | INFO     | extracted standard info from prmon json
[2025-07-27 20:27:49] 2025-07-28 00:27:16,188 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 20:27:49] 2025-07-28 00:27:16,188 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 20:27:49] 2025-07-28 00:27:16,188 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 20:27:49] 2025-07-28 00:27:16,188 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 20:27:49] 2025-07-28 00:27:16,189 | INFO     | fitting pss+swap vs Time
[2025-07-27 20:27:49] 2025-07-28 00:27:16,189 | INFO     | sum of square deviations: 36465800.0
[2025-07-27 20:27:49] 2025-07-28 00:27:16,189 | INFO     | sum of deviations: 187707553.0
[2025-07-27 20:27:49] 2025-07-28 00:27:16,189 | INFO     | mean x: 1753660780.0
[2025-07-27 20:27:49] 2025-07-28 00:27:16,189 | INFO     | mean y: 2539058.775510204
[2025-07-27 20:27:49] 2025-07-28 00:27:16,189 | INFO     | -- intersect: -9024422472.463934
[2025-07-27 20:27:49] 2025-07-28 00:27:16,189 | INFO     | intersect: -9024422472.463934
[2025-07-27 20:27:49] 2025-07-28 00:27:16,189 | INFO     | chi2: 0.0008182393642479698
[2025-07-27 20:27:49] 2025-07-28 00:27:16,189 | INFO     | -- intersect: -9024422472.463934
[2025-07-27 20:27:49] 2025-07-28 00:27:16,189 | INFO     | current memory leak: 5.15 B/s (using 49 data points, chi2=0.00)
[2025-07-27 20:27:49] 2025-07-28 00:27:16,190 | INFO     | could have reported an average CPU frequency of 3741 MHz (5 samples)
[2025-07-27 20:27:49] 2025-07-28 00:27:16,190 | INFO     | ..............................
[2025-07-27 20:27:49] 2025-07-28 00:27:16,190 | INFO     | . Timing measurements:
[2025-07-27 20:27:49] 2025-07-28 00:27:16,190 | INFO     | . get job = 0 s
[2025-07-27 20:27:49] 2025-07-28 00:27:16,190 | INFO     | . initial setup = 2 s
[2025-07-27 20:27:49] 2025-07-28 00:27:16,190 | INFO     | . payload setup = 5 s
[2025-07-27 20:27:49] 2025-07-28 00:27:16,190 | INFO     | . stage-in = 0 s
[2025-07-27 20:27:49] 2025-07-28 00:27:16,190 | INFO     | . payload execution = 3419 s
[2025-07-27 20:27:49] 2025-07-28 00:27:16,190 | INFO     | . stage-out = 0 s
[2025-07-27 20:27:49] 2025-07-28 00:27:16,190 | INFO     | . log creation = 0 s
[2025-07-27 20:27:49] 2025-07-28 00:27:16,190 | INFO     | ..............................
[2025-07-27 20:27:49] 2025-07-28 00:27:16,248 | INFO     | 
[2025-07-27 20:27:49] 2025-07-28 00:27:16,248 | INFO     | job summary report
[2025-07-27 20:27:49] 2025-07-28 00:27:16,248 | INFO     | --------------------------------------------------
[2025-07-27 20:27:49] 2025-07-28 00:27:16,248 | INFO     | PanDA job id: 6747578698
[2025-07-27 20:27:49] 2025-07-28 00:27:16,248 | INFO     | task id: 45743349
[2025-07-27 20:27:49] 2025-07-28 00:27:16,248 | INFO     | errors: (none)
[2025-07-27 20:27:49] 2025-07-28 00:27:16,249 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 20:27:49] 2025-07-28 00:27:16,249 | INFO     | pilot state: finished 
[2025-07-27 20:27:49] 2025-07-28 00:27:16,249 | INFO     | transexitcode: 0
[2025-07-27 20:27:49] 2025-07-28 00:27:16,249 | INFO     | exeerrorcode: 0
[2025-07-27 20:27:49] 2025-07-28 00:27:16,249 | INFO     | exeerrordiag: 
[2025-07-27 20:27:49] 2025-07-28 00:27:16,249 | INFO     | exitcode: 0
[2025-07-27 20:27:49] 2025-07-28 00:27:16,249 | INFO     | exitmsg: OK
[2025-07-27 20:27:49] 2025-07-28 00:27:16,249 | INFO     | cpuconsumptiontime: 25447 s
[2025-07-27 20:27:49] 2025-07-28 00:27:16,249 | INFO     | nevents: 400
[2025-07-27 20:27:49] 2025-07-28 00:27:16,249 | INFO     | neventsw: 0
[2025-07-27 20:27:49] 2025-07-28 00:27:16,249 | INFO     | pid: 3982238
[2025-07-27 20:27:49] 2025-07-28 00:27:16,249 | INFO     | pgrp: 3982238
[2025-07-27 20:27:49] 2025-07-28 00:27:16,249 | INFO     | corecount: 8
[2025-07-27 20:27:49] 2025-07-28 00:27:16,249 | INFO     | event service: False
[2025-07-27 20:27:49] 2025-07-28 00:27:16,249 | INFO     | sizes: {0: 2397476, 4: 2397738, 11: 2397766, 3428: 2423499, 3429: 2432499, 3430: 2432555, 3434: 2432909}
[2025-07-27 20:27:49] 2025-07-28 00:27:16,249 | INFO     | --------------------------------------------------
[2025-07-27 20:27:49] 2025-07-28 00:27:16,249 | INFO     | 
[2025-07-27 20:27:49] 2025-07-28 00:27:16,249 | INFO     | executing command: ls -lF /tmp/boinchome/slots/10
[2025-07-27 20:27:49] 2025-07-28 00:27:16,269 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 20:27:49] 2025-07-28 00:27:16,269 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 20:27:49] 2025-07-28 00:27:16,269 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 20:27:49] 2025-07-28 00:27:16,269 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 20:27:49] 2025-07-28 00:27:16,269 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 20:27:49] 2025-07-28 00:27:16,269 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 20:27:49] 2025-07-28 00:27:16,270 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 20:27:49] 2025-07-28 00:27:16,270 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 20:27:49] 2025-07-28 00:27:16,270 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 20:27:49] 2025-07-28 00:27:16,270 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 20:27:49] 2025-07-28 00:27:16,270 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 20:27:49] 2025-07-28 00:27:16,270 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 20:27:49] 2025-07-28 00:27:16,270 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 20:27:49] 2025-07-28 00:27:16,270 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 20:27:49] 2025-07-28 00:27:16,270 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 20:27:49] 2025-07-28 00:27:16,270 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 20:27:49] 2025-07-28 00:27:16,270 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 20:27:49] 2025-07-28 00:27:16,270 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 20:27:49] 2025-07-28 00:27:16,270 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 20:27:49] 2025-07-28 00:27:16,270 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 20:27:49] 2025-07-28 00:27:16,270 | INFO     | job 6747578698 has completed (purged errors)
[2025-07-27 20:27:49] 2025-07-28 00:27:16,270 | INFO     | overall cleanup function is called
[2025-07-27 20:27:49] 2025-07-28 00:27:17,277 | INFO     | --- collectZombieJob: --- 10, [3982238]
[2025-07-27 20:27:49] 2025-07-28 00:27:17,277 | INFO     | zombie collector waiting for pid 3982238
[2025-07-27 20:27:49] 2025-07-28 00:27:17,277 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 20:27:49] 2025-07-28 00:27:17,277 | INFO     | collected zombie processes
[2025-07-27 20:27:49] 2025-07-28 00:27:17,278 | INFO     | will attempt to kill all subprocesses of pid=3982238
[2025-07-27 20:27:49] 2025-07-28 00:27:17,635 | INFO     | process IDs to be killed: [3982238] (in reverse order)
[2025-07-27 20:27:49] 2025-07-28 00:27:17,753 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 20:27:49] 2025-07-28 00:27:17,754 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 20:27:49] 2025-07-28 00:27:17,769 | INFO     | did not find any defunct processes belonging to 3982238
[2025-07-27 20:27:49] 2025-07-28 00:27:17,782 | INFO     | did not find any defunct processes belonging to 3982238
[2025-07-27 20:27:49] 2025-07-28 00:27:17,782 | INFO     | ready for new job
[2025-07-27 20:27:49] 2025-07-28 00:27:17,782 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 20:27:49] 2025-07-28 00:27:17,783 | INFO     | ***************************************
[2025-07-27 20:27:49] 2025-07-28 00:27:17,783 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 20:27:49] 2025-07-28 00:27:17,783 | INFO     | ***************************************
[2025-07-27 20:27:49] 2025-07-28 00:27:17,783 | INFO     | 
[2025-07-27 20:27:49] 2025-07-28 00:27:17,788 | INFO     | architecture information:
[2025-07-27 20:27:49] 2025-07-28 00:27:17,788 | INFO     | executing command: cat /etc/os-release
[2025-07-27 20:27:49] 2025-07-28 00:27:17,805 | INFO     | cat /etc/os-release:
[2025-07-27 20:27:49] NAME="CentOS Linux"
[2025-07-27 20:27:49] VERSION="7 (Core)"
[2025-07-27 20:27:49] ID="centos"
[2025-07-27 20:27:49] ID_LIKE="rhel fedora"
[2025-07-27 20:27:49] VERSION_ID="7"
[2025-07-27 20:27:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 20:27:49] ANSI_COLOR="0;31"
[2025-07-27 20:27:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 20:27:49] HOME_URL="https://www.centos.org/"
[2025-07-27 20:27:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 20:27:49] 
[2025-07-27 20:27:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 20:27:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 20:27:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 20:27:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 20:27:49] 
[2025-07-27 20:27:49] 2025-07-28 00:27:17,806 | INFO     | ***************************************
[2025-07-27 20:27:49] 2025-07-28 00:27:18,309 | INFO     | executing command: df -mP /tmp/boinchome/slots/10
[2025-07-27 20:27:49] 2025-07-28 00:27:18,327 | INFO     | sufficient remaining disk space (166161547264 B)
[2025-07-27 20:27:49] 2025-07-28 00:27:18,327 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 20:27:49] 2025-07-28 00:27:18,327 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 20:27:49] 2025-07-28 00:27:18,328 | INFO     | update_server=False
[2025-07-27 20:27:49] 2025-07-28 00:27:18,328 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 20:27:49] 2025-07-28 00:27:18,328 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 20:27:49] 2025-07-28 00:27:18,467 | INFO     | all data control threads have been joined
[2025-07-27 20:27:49] 2025-07-28 00:27:18,723 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 20:27:49] 2025-07-28 00:27:18,805 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 20:27:49] 2025-07-28 00:27:18,805 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 20:27:49] 2025-07-28 00:27:18,805 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 20:27:49] 2025-07-28 00:27:18,806 | INFO     | will abort loop
[2025-07-27 20:27:49] 2025-07-28 00:27:19,332 | INFO     | [job] retrieve thread has finished
[2025-07-27 20:27:49] 2025-07-28 00:27:19,433 | INFO     | all payload control threads have been joined
[2025-07-27 20:27:49] 2025-07-28 00:27:19,472 | INFO     | [data] control thread has finished
[2025-07-27 20:27:49] 2025-07-28 00:27:19,529 | INFO     | [job] validate thread has finished
[2025-07-27 20:27:49] 2025-07-28 00:27:19,551 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 20:27:49] 2025-07-28 00:27:19,579 | INFO     | [payload] failed_post thread has finished
[2025-07-27 20:27:49] 2025-07-28 00:27:19,785 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 20:27:49] 2025-07-28 00:27:19,802 | INFO     | all job control threads have been joined
[2025-07-27 20:27:49] 2025-07-28 00:27:19,806 | INFO     | [job] job monitor thread has finished
[2025-07-27 20:27:49] 2025-07-28 00:27:20,094 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 20:27:49] 2025-07-28 00:27:20,438 | INFO     | [payload] control thread has finished
[2025-07-27 20:27:49] 2025-07-28 00:27:20,654 | INFO     | [data] copytool_in thread has finished
[2025-07-27 20:27:49] 2025-07-28 00:27:20,728 | INFO     | [data] copytool_out thread has finished
[2025-07-27 20:27:49] 2025-07-28 00:27:20,775 | INFO     | [payload] validate_post thread has finished
[2025-07-27 20:27:49] 2025-07-28 00:27:20,807 | INFO     | [job] control thread has finished
[2025-07-27 20:27:49] 2025-07-28 00:27:21,255 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 20:27:49] 2025-07-28 00:27:22,261 | INFO     | [job] queue monitor thread has finished
[2025-07-27 20:27:49] 2025-07-28 00:27:22,334 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 20:27:49] 2025-07-28 00:27:28,778 | INFO     | job.realtimelogging is not enabled
[2025-07-27 20:27:49] 2025-07-28 00:27:29,778 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 20:27:49] 2025-07-28 00:27:30,451 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139802531178304)>', '<ExcThread(monitor, started 139802015934208)>']
[2025-07-27 20:27:49] 2025-07-28 00:27:35,463 | INFO     | all workflow threads have been joined
[2025-07-27 20:27:49] 2025-07-28 00:27:35,463 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 20:27:49] 2025-07-28 00:27:35,464 | INFO     | traces error code: 0
[2025-07-27 20:27:49] 2025-07-28 00:27:35,464 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 20:27:49] 2025-07-28 00:27:49,057 | INFO     | PID=3975060 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 20:27:49] 2025-07-28 00:27:49,057 | INFO     | .. there are 16 such processes running
[2025-07-27 20:27:49] 2025-07-28 00:27:49,057 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 20:27:49] 2025-07-28 00:27:49,057 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 20:27:49] 2025-07-28 00:27:49,057 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 20:27:49] 2025-07-28 00:27:49,057 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 20:27:49] 2025-07-28 00:27:49,057 | INFO     | [monitor] control thread has ended
[2025-07-27 20:27:49] 2025-07-28 00:27:49,165 [wrapper] ==== pilot stdout END ====
[2025-07-27 20:27:49] 2025-07-28 00:27:49,168 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 20:27:49] 2025-07-28 00:27:49,171 [wrapper] pilotpid: 3975060
[2025-07-27 20:27:49] 2025-07-28 00:27:49,174 [wrapper] Pilot exit status: 0
[2025-07-27 20:27:49] 2025-07-28 00:27:49,184 [wrapper] pandaids: 6747578698
[2025-07-27 20:27:49] 2025-07-28 00:27:49,270 [wrapper] cleanup supervisor_pilot 4157671 3975061
[2025-07-27 20:27:49] 2025-07-28 00:27:49,273 [wrapper] Test setup, not cleaning
[2025-07-27 20:27:49] 2025-07-28 00:27:49,276 [wrapper] apfmon messages muted
[2025-07-27 20:27:49] 2025-07-28 00:27:49,279 [wrapper] ==== wrapper stdout END ====
[2025-07-27 20:27:49] 2025-07-28 00:27:49,282 [wrapper] ==== wrapper stderr END ====
[2025-07-27 20:27:49]  *** Error codes and diagnostics ***
[2025-07-27 20:27:49]     "exeErrorCode": 0,
[2025-07-27 20:27:49]     "exeErrorDiag": "",
[2025-07-27 20:27:49]     "pilotErrorCode": 0,
[2025-07-27 20:27:49]     "pilotErrorDiag": "",
[2025-07-27 20:27:49]  *** Listing of results directory ***
[2025-07-27 20:27:49] total 355136
[2025-07-27 20:27:49] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 13:39 pilot3.tar.gz
[2025-07-27 20:27:49] -rwx------. 1 boincer umatlas     36292 Jul 27 14:02 runpilot2-wrapper.sh
[2025-07-27 20:27:49] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 14:02 queuedata.json
[2025-07-27 20:27:49] -rw-r--r--. 1 boincer umatlas       100 Jul 27 19:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 20:27:49] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 19:29 run_atlas
[2025-07-27 20:27:49] -rw-r--r--. 1 boincer umatlas       105 Jul 27 19:29 job.xml
[2025-07-27 20:27:49] -rw-r--r--. 2 boincer umatlas 143653199 Jul 27 19:29 EVNT.45743347._002919.pool.root.1
[2025-07-27 20:27:49] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 19:29 start_atlas.sh
[2025-07-27 20:27:49] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 19:29 shared
[2025-07-27 20:27:49] -rw-r--r--. 2 boincer umatlas    542896 Jul 27 19:29 input.tar.gz
[2025-07-27 20:27:49] -rw-r--r--. 1 boincer umatlas         0 Jul 27 19:29 boinc_lockfile
[2025-07-27 20:27:49] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 19:29 pandaJob.out
[2025-07-27 20:27:49] -rw-------. 1 boincer umatlas    980125 Jul 27 19:29 agis_schedconf.cvmfs.json
[2025-07-27 20:27:49] -rw-------. 1 boincer umatlas   1593052 Jul 27 19:29 agis_ddmendpoints.agis.ALL.json
[2025-07-27 20:27:49] drwx------. 4 boincer umatlas      4096 Jul 27 19:29 pilot3
[2025-07-27 20:27:49] -rw-r--r--. 1 boincer umatlas      7176 Jul 27 20:19 init_data.xml
[2025-07-27 20:27:49] -rw-------. 1 boincer umatlas 214837074 Jul 27 20:26 HITS.45743349._053352.pool.root.1
[2025-07-27 20:27:49] -rw-r--r--. 1 boincer umatlas       529 Jul 27 20:26 boinc_task_state.xml
[2025-07-27 20:27:49] -rw-------. 1 boincer umatlas        95 Jul 27 20:26 pilot_heartbeat.json
[2025-07-27 20:27:49] -rw-------. 1 boincer umatlas      1027 Jul 27 20:27 memory_monitor_summary.json
[2025-07-27 20:27:49] -rw-------. 1 boincer umatlas    290040 Jul 27 20:27 log.45743349._053352.job.log.tgz.1
[2025-07-27 20:27:49] -rw-------. 1 boincer umatlas      7761 Jul 27 20:27 heartbeat.json
[2025-07-27 20:27:49] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 20:27 boinc_mmap_file
[2025-07-27 20:27:49] -rw-r--r--. 1 boincer umatlas        27 Jul 27 20:27 wrapper_checkpoint.txt
[2025-07-27 20:27:49] -rw-------. 1 boincer umatlas       823 Jul 27 20:27 pilotlog.txt
[2025-07-27 20:27:49] -rw-------. 1 boincer umatlas    352343 Jul 27 20:27 log.45743349._053352.job.log.1
[2025-07-27 20:27:49] -rw-------. 1 boincer umatlas       357 Jul 27 20:27 output.list
[2025-07-27 20:27:49] -rw-r--r--. 1 boincer umatlas       620 Jul 27 20:27 runtime_log
[2025-07-27 20:27:49] -rw-------. 1 boincer umatlas    665600 Jul 27 20:27 result.tar.gz
[2025-07-27 20:27:49] -rw-------. 1 boincer umatlas       651 Jul 27 20:27 UrrNDmasK07n9Rq4apOajLDm4fhM0noT9bVof3QYDm0s2KDm6AYADo.diag
[2025-07-27 20:27:49] -rw-r--r--. 1 boincer umatlas      8674 Jul 27 20:27 runtime_log.err
[2025-07-27 20:27:49] -rw-r--r--. 1 boincer umatlas     21858 Jul 27 20:27 stderr.txt
[2025-07-27 20:27:49] HITS file was successfully produced:
[2025-07-27 20:27:49] -rw-------. 1 boincer umatlas 214837074 Jul 27 20:26 shared/HITS.pool.root.1
[2025-07-27 20:27:49]  *** Contents of shared directory: ***
[2025-07-27 20:27:49] total 351300
[2025-07-27 20:27:49] -rw-r--r--. 2 boincer umatlas 143653199 Jul 27 19:29 ATLAS.root_0
[2025-07-27 20:27:49] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 19:29 start_atlas.sh
[2025-07-27 20:27:49] -rw-r--r--. 2 boincer umatlas    542896 Jul 27 19:29 input.tar.gz
[2025-07-27 20:27:49] -rw-------. 1 boincer umatlas 214837074 Jul 27 20:26 HITS.pool.root.1
[2025-07-27 20:27:49] -rw-------. 1 boincer umatlas    665600 Jul 27 20:27 result.tar.gz
20:27:51 (3971400): run_atlas exited; CPU time 25538.235544
20:27:51 (3971400): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN