Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:17:07 (479619): wrapper (7.7.26015): starting
19:17:07 (479619): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 19:17:07] Arguments: --nthreads 8
[2025-07-27 19:17:07] Threads: 8
[2025-07-27 19:17:07] Checking for CVMFS
[2025-07-27 19:17:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 19:17:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 19:17:08] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 19:17:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 19:17:08] 2.13.1.0 5062 2588 121916 148828 3 17 13575279 40960001 12314 16776704 0 7071065 99.741 4992315 47763 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 19:17:08] CVMFS is ok
[2025-07-27 19:17:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 19:17:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 19:17:08] Further information can be found at the LHC@home message board.
[2025-07-27 19:17:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 19:17:08] Checking for apptainer binary...
[2025-07-27 19:17:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 19:17:08] Running /usr/bin/apptainer --version
[2025-07-27 19:17:08] apptainer version 1.4.1-1.el9
[2025-07-27 19:17:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 19:17:08] c-206-40.aglt2.org
[2025-07-27 19:17:08] apptainer works
[2025-07-27 19:17:08] Set ATHENA_PROC_NUMBER=8
[2025-07-27 19:17:08] Set ATHENA_CORE_NUMBER=8
[2025-07-27 19:17:08] Starting ATLAS job with PandaID=6747578560
[2025-07-27 19:17:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 20:57:43]  *** The last 200 lines of the pilot log: ***
[2025-07-27 20:57:43] 2025-07-28 00:56:41,253 | INFO     | job 6747578560 has state=finished
[2025-07-27 20:57:43] 2025-07-28 00:56:41,254 | INFO     | preparing for final server update for job 6747578560 in state='finished'
[2025-07-27 20:57:43] 2025-07-28 00:56:41,482 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-27 20:57:43] 2025-07-28 00:56:41,483 | INFO     | this job has now completed (state=finished)
[2025-07-27 20:57:43] 2025-07-28 00:56:41,483 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 20:57:43] 2025-07-28 00:56:41,483 | INFO     | log transfer has been attempted: DONE
[2025-07-27 20:57:43] 2025-07-28 00:56:41,483 | INFO     | job 6747578560 has finished - writing final server update
[2025-07-27 20:57:43] 2025-07-28 00:56:41,483 | INFO     | total number of processed events: 400 (read)
[2025-07-27 20:57:43] 2025-07-28 00:56:41,493 | INFO     | executing command: lscpu
[2025-07-27 20:57:43] 2025-07-28 00:56:41,554 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 20:57:43] 2025-07-28 00:56:41,690 | INFO     | 5954s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-27 20:57:43] 2025-07-28 00:56:43,091 | INFO     | monitor loop #425: job 0:6747578560 is in state 'finished'
[2025-07-27 20:57:43] 2025-07-28 00:56:43,092 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:57:43] 2025-07-28 00:56:43,234 | INFO     | PID=485167 has CPU usage=11.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 20:57:43] 2025-07-28 00:56:43,234 | INFO     | .. there are 10 such processes running
[2025-07-27 20:57:43] 2025-07-28 00:56:45,595 | INFO     | monitor loop #426: job 0:6747578560 is in state 'finished'
[2025-07-27 20:57:43] 2025-07-28 00:56:45,596 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:57:43] 2025-07-28 00:56:48,106 | INFO     | monitor loop #427: job 0:6747578560 is in state 'finished'
[2025-07-27 20:57:43] 2025-07-28 00:56:48,107 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:57:43] 2025-07-28 00:56:50,611 | INFO     | monitor loop #428: job 0:6747578560 is in state 'finished'
[2025-07-27 20:57:43] 2025-07-28 00:56:50,612 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:57:43] 2025-07-28 00:56:53,116 | INFO     | monitor loop #429: job 0:6747578560 is in state 'finished'
[2025-07-27 20:57:43] 2025-07-28 00:56:53,117 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:57:43] 2025-07-28 00:56:55,633 | INFO     | monitor loop #430: job 0:6747578560 is in state 'finished'
[2025-07-27 20:57:43] 2025-07-28 00:56:55,633 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:57:43] 2025-07-28 00:56:58,140 | INFO     | monitor loop #431: job 0:6747578560 is in state 'finished'
[2025-07-27 20:57:43] 2025-07-28 00:56:58,144 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:57:43] 2025-07-28 00:57:00,660 | INFO     | monitor loop #432: job 0:6747578560 is in state 'finished'
[2025-07-27 20:57:43] 2025-07-28 00:57:00,661 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:57:43] 2025-07-28 00:57:03,165 | INFO     | monitor loop #433: job 0:6747578560 is in state 'finished'
[2025-07-27 20:57:43] 2025-07-28 00:57:03,172 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:57:43] 2025-07-28 00:57:05,683 | INFO     | monitor loop #434: job 0:6747578560 is in state 'finished'
[2025-07-27 20:57:43] 2025-07-28 00:57:05,683 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:57:43] 2025-07-28 00:57:05,982 | INFO     | PID=485167 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 20:57:43] 2025-07-28 00:57:05,982 | INFO     | .. there are 10 such processes running
[2025-07-27 20:57:43] 2025-07-28 00:57:08,187 | INFO     | monitor loop #435: job 0:6747578560 is in state 'finished'
[2025-07-27 20:57:43] 2025-07-28 00:57:08,190 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:57:43] 2025-07-28 00:57:08,904 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 20:57:43] 2025-07-28 00:57:08,909 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3213.1428906250007
[2025-07-27 20:57:43] 2025-07-28 00:57:08,923 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747578560/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 20:57:43] 2025-07-28 00:57:08,924 | INFO     | extracted standard info from prmon json
[2025-07-27 20:57:43] 2025-07-28 00:57:08,924 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 20:57:43] 2025-07-28 00:57:08,924 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 20:57:43] 2025-07-28 00:57:08,925 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 20:57:43] 2025-07-28 00:57:08,925 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 20:57:43] 2025-07-28 00:57:08,927 | INFO     | fitting pss+swap vs Time
[2025-07-27 20:57:43] 2025-07-28 00:57:08,928 | INFO     | sum of square deviations: 226014914.45555517
[2025-07-27 20:57:43] 2025-07-28 00:57:08,928 | INFO     | sum of deviations: -17319396607.133327
[2025-07-27 20:57:43] 2025-07-28 00:57:08,929 | INFO     | mean x: 1753661312.5222223
[2025-07-27 20:57:43] 2025-07-28 00:57:08,929 | INFO     | mean y: 2701677.066666667
[2025-07-27 20:57:43] 2025-07-28 00:57:08,929 | INFO     | -- intersect: 134384788183.71152
[2025-07-27 20:57:43] 2025-07-28 00:57:08,929 | INFO     | intersect: 134384788183.71152
[2025-07-27 20:57:43] 2025-07-28 00:57:08,929 | INFO     | chi2: 0.04572639429745512
[2025-07-27 20:57:43] 2025-07-28 00:57:08,929 | INFO     | -- intersect: 134384788183.71152
[2025-07-27 20:57:43] 2025-07-28 00:57:08,929 | INFO     | current memory leak: -76.63 B/s (using 90 data points, chi2=0.05)
[2025-07-27 20:57:43] 2025-07-28 00:57:08,930 | INFO     | could have reported an average CPU frequency of 3225 MHz (7 samples)
[2025-07-27 20:57:43] 2025-07-28 00:57:08,930 | INFO     | ..............................
[2025-07-27 20:57:43] 2025-07-28 00:57:08,930 | INFO     | . Timing measurements:
[2025-07-27 20:57:43] 2025-07-28 00:57:08,930 | INFO     | . get job = 0 s
[2025-07-27 20:57:43] 2025-07-28 00:57:08,930 | INFO     | . initial setup = 3 s
[2025-07-27 20:57:43] 2025-07-28 00:57:08,930 | INFO     | . payload setup = 14 s
[2025-07-27 20:57:43] 2025-07-28 00:57:08,930 | INFO     | . stage-in = 0 s
[2025-07-27 20:57:43] 2025-07-28 00:57:08,930 | INFO     | . payload execution = 5908 s
[2025-07-27 20:57:43] 2025-07-28 00:57:08,930 | INFO     | . stage-out = 2 s
[2025-07-27 20:57:43] 2025-07-28 00:57:08,930 | INFO     | . log creation = 0 s
[2025-07-27 20:57:43] 2025-07-28 00:57:08,930 | INFO     | ..............................
[2025-07-27 20:57:43] 2025-07-28 00:57:09,046 | INFO     | 
[2025-07-27 20:57:43] 2025-07-28 00:57:09,046 | INFO     | job summary report
[2025-07-27 20:57:43] 2025-07-28 00:57:09,046 | INFO     | --------------------------------------------------
[2025-07-27 20:57:43] 2025-07-28 00:57:09,046 | INFO     | PanDA job id: 6747578560
[2025-07-27 20:57:43] 2025-07-28 00:57:09,046 | INFO     | task id: 45743349
[2025-07-27 20:57:43] 2025-07-28 00:57:09,047 | INFO     | errors: (none)
[2025-07-27 20:57:43] 2025-07-28 00:57:09,047 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 20:57:43] 2025-07-28 00:57:09,047 | INFO     | pilot state: finished 
[2025-07-27 20:57:43] 2025-07-28 00:57:09,047 | INFO     | transexitcode: 0
[2025-07-27 20:57:43] 2025-07-28 00:57:09,047 | INFO     | exeerrorcode: 0
[2025-07-27 20:57:43] 2025-07-28 00:57:09,047 | INFO     | exeerrordiag: 
[2025-07-27 20:57:43] 2025-07-28 00:57:09,047 | INFO     | exitcode: 0
[2025-07-27 20:57:43] 2025-07-28 00:57:09,047 | INFO     | exitmsg: OK
[2025-07-27 20:57:43] 2025-07-28 00:57:09,047 | INFO     | cpuconsumptiontime: 36162 s
[2025-07-27 20:57:43] 2025-07-28 00:57:09,047 | INFO     | nevents: 400
[2025-07-27 20:57:43] 2025-07-28 00:57:09,047 | INFO     | neventsw: 0
[2025-07-27 20:57:43] 2025-07-28 00:57:09,047 | INFO     | pid: 491657
[2025-07-27 20:57:43] 2025-07-28 00:57:09,047 | INFO     | pgrp: 491657
[2025-07-27 20:57:43] 2025-07-28 00:57:09,047 | INFO     | corecount: 8
[2025-07-27 20:57:43] 2025-07-28 00:57:09,047 | INFO     | event service: False
[2025-07-27 20:57:43] 2025-07-28 00:57:09,048 | INFO     | sizes: {0: 2397302, 1: 2397501, 11: 2397791, 5926: 2424465, 5929: 2433463, 5931: 2433519, 5959: 2433841}
[2025-07-27 20:57:43] 2025-07-28 00:57:09,048 | INFO     | --------------------------------------------------
[2025-07-27 20:57:43] 2025-07-28 00:57:09,048 | INFO     | 
[2025-07-27 20:57:43] 2025-07-28 00:57:09,048 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 20:57:43] 2025-07-28 00:57:09,073 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 20:57:43] 2025-07-28 00:57:09,074 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 20:57:43] 2025-07-28 00:57:09,074 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 20:57:43] 2025-07-28 00:57:09,074 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 20:57:43] 2025-07-28 00:57:09,074 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 20:57:43] 2025-07-28 00:57:09,074 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 20:57:43] 2025-07-28 00:57:09,074 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 20:57:43] 2025-07-28 00:57:09,074 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 20:57:43] 2025-07-28 00:57:09,074 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 20:57:43] 2025-07-28 00:57:09,074 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 20:57:43] 2025-07-28 00:57:09,075 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 20:57:43] 2025-07-28 00:57:09,075 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 20:57:43] 2025-07-28 00:57:09,075 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 20:57:43] 2025-07-28 00:57:09,075 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 20:57:43] 2025-07-28 00:57:09,075 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 20:57:43] 2025-07-28 00:57:09,075 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 20:57:43] 2025-07-28 00:57:09,075 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 20:57:43] 2025-07-28 00:57:09,075 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 20:57:43] 2025-07-28 00:57:09,075 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 20:57:43] 2025-07-28 00:57:09,075 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 20:57:43] 2025-07-28 00:57:09,075 | INFO     | job 6747578560 has completed (purged errors)
[2025-07-27 20:57:43] 2025-07-28 00:57:09,076 | INFO     | overall cleanup function is called
[2025-07-27 20:57:43] 2025-07-28 00:57:10,088 | INFO     | --- collectZombieJob: --- 10, [491657]
[2025-07-27 20:57:43] 2025-07-28 00:57:10,088 | INFO     | zombie collector waiting for pid 491657
[2025-07-27 20:57:43] 2025-07-28 00:57:10,088 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 20:57:43] 2025-07-28 00:57:10,088 | INFO     | collected zombie processes
[2025-07-27 20:57:43] 2025-07-28 00:57:10,088 | INFO     | will attempt to kill all subprocesses of pid=491657
[2025-07-27 20:57:43] 2025-07-28 00:57:10,536 | INFO     | process IDs to be killed: [491657] (in reverse order)
[2025-07-27 20:57:43] 2025-07-28 00:57:10,988 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 20:57:43] 2025-07-28 00:57:10,989 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 20:57:43] 2025-07-28 00:57:11,018 | INFO     | did not find any defunct processes belonging to 491657
[2025-07-27 20:57:43] 2025-07-28 00:57:11,054 | INFO     | did not find any defunct processes belonging to 491657
[2025-07-27 20:57:43] 2025-07-28 00:57:11,055 | INFO     | ready for new job
[2025-07-27 20:57:43] 2025-07-28 00:57:11,056 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 20:57:43] 2025-07-28 00:57:11,057 | INFO     | ***************************************
[2025-07-27 20:57:43] 2025-07-28 00:57:11,058 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 20:57:43] 2025-07-28 00:57:11,058 | INFO     | ***************************************
[2025-07-27 20:57:43] 2025-07-28 00:57:11,058 | INFO     | 
[2025-07-27 20:57:43] 2025-07-28 00:57:11,090 | INFO     | architecture information:
[2025-07-27 20:57:43] 2025-07-28 00:57:11,097 | INFO     | executing command: cat /etc/os-release
[2025-07-27 20:57:43] 2025-07-28 00:57:11,206 | INFO     | cat /etc/os-release:
[2025-07-27 20:57:43] NAME="CentOS Linux"
[2025-07-27 20:57:43] VERSION="7 (Core)"
[2025-07-27 20:57:43] ID="centos"
[2025-07-27 20:57:43] ID_LIKE="rhel fedora"
[2025-07-27 20:57:43] VERSION_ID="7"
[2025-07-27 20:57:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 20:57:43] ANSI_COLOR="0;31"
[2025-07-27 20:57:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 20:57:43] HOME_URL="https://www.centos.org/"
[2025-07-27 20:57:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 20:57:43] 
[2025-07-27 20:57:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 20:57:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 20:57:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 20:57:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 20:57:43] 
[2025-07-27 20:57:43] 2025-07-28 00:57:11,207 | INFO     | ***************************************
[2025-07-27 20:57:43] 2025-07-28 00:57:11,712 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 20:57:43] 2025-07-28 00:57:11,856 | INFO     | sufficient remaining disk space (86301999104 B)
[2025-07-27 20:57:43] 2025-07-28 00:57:11,856 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 20:57:43] 2025-07-28 00:57:11,856 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 20:57:43] 2025-07-28 00:57:11,856 | INFO     | update_server=False
[2025-07-27 20:57:43] 2025-07-28 00:57:11,856 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 20:57:43] 2025-07-28 00:57:11,856 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 20:57:43] 2025-07-28 00:57:11,856 | INFO     | aborting loop
[2025-07-27 20:57:43] 2025-07-28 00:57:11,985 | INFO     | all payload control threads have been joined
[2025-07-27 20:57:43] 2025-07-28 00:57:12,390 | INFO     | all data control threads have been joined
[2025-07-27 20:57:43] 2025-07-28 00:57:12,454 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 20:57:43] 2025-07-28 00:57:12,862 | INFO     | [job] retrieve thread has finished
[2025-07-27 20:57:43] 2025-07-28 00:57:12,863 | INFO     | [job] job monitor thread has finished
[2025-07-27 20:57:43] 2025-07-28 00:57:12,994 | INFO     | [payload] control thread has finished
[2025-07-27 20:57:43] 2025-07-28 00:57:13,084 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 20:57:43] 2025-07-28 00:57:13,223 | INFO     | [payload] failed_post thread has finished
[2025-07-27 20:57:43] 2025-07-28 00:57:13,260 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 20:57:43] 2025-07-28 00:57:13,312 | INFO     | all job control threads have been joined
[2025-07-27 20:57:43] 2025-07-28 00:57:13,397 | INFO     | [data] control thread has finished
[2025-07-27 20:57:43] 2025-07-28 00:57:13,456 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 20:57:43] 2025-07-28 00:57:13,489 | INFO     | [data] copytool_in thread has finished
[2025-07-27 20:57:43] 2025-07-28 00:57:13,912 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 20:57:43] 2025-07-28 00:57:13,916 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 20:57:43] 2025-07-28 00:57:14,060 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 20:57:43] 2025-07-28 00:57:14,225 | INFO     | [payload] validate_post thread has finished
[2025-07-27 20:57:43] 2025-07-28 00:57:14,318 | INFO     | [job] control thread has finished
[2025-07-27 20:57:43] 2025-07-28 00:57:14,350 | INFO     | [job] validate thread has finished
[2025-07-27 20:57:43] 2025-07-28 00:57:14,465 | INFO     | [data] copytool_out thread has finished
[2025-07-27 20:57:43] 2025-07-28 00:57:15,066 | INFO     | [job] queue monitor thread has finished
[2025-07-27 20:57:43] 2025-07-28 00:57:17,921 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 20:57:43] 2025-07-28 00:57:18,852 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140192846444352)>', '<ExcThread(monitor, started 140192329479936)>']
[2025-07-27 20:57:43] 2025-07-28 00:57:23,878 | INFO     | all workflow threads have been joined
[2025-07-27 20:57:43] 2025-07-28 00:57:23,879 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 20:57:43] 2025-07-28 00:57:23,879 | INFO     | traces error code: 0
[2025-07-27 20:57:43] 2025-07-28 00:57:23,879 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 20:57:43] 2025-07-28 00:57:42,451 | INFO     | PID=485167 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 20:57:43] 2025-07-28 00:57:42,451 | INFO     | .. there are 10 such processes running
[2025-07-27 20:57:43] 2025-07-28 00:57:42,451 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 20:57:43] 2025-07-28 00:57:42,452 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 20:57:43] 2025-07-28 00:57:42,452 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 20:57:43] 2025-07-28 00:57:42,452 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 20:57:43] 2025-07-28 00:57:42,452 | INFO     | [monitor] control thread has ended
[2025-07-27 20:57:43] 2025-07-28 00:57:42,652 [wrapper] ==== pilot stdout END ====
[2025-07-27 20:57:43] 2025-07-28 00:57:42,684 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 20:57:43] 2025-07-28 00:57:42,736 [wrapper] pilotpid: 485167
[2025-07-27 20:57:43] 2025-07-28 00:57:42,794 [wrapper] Pilot exit status: 0
[2025-07-27 20:57:43] 2025-07-28 00:57:42,987 [wrapper] pandaids: 6747578560
[2025-07-27 20:57:43] 2025-07-28 00:57:43,241 [wrapper] cleanup supervisor_pilot  612783 485168
[2025-07-27 20:57:43] 2025-07-28 00:57:43,253 [wrapper] Test setup, not cleaning
[2025-07-27 20:57:43] 2025-07-28 00:57:43,265 [wrapper] apfmon messages muted
[2025-07-27 20:57:43] 2025-07-28 00:57:43,277 [wrapper] ==== wrapper stdout END ====
[2025-07-27 20:57:43] 2025-07-28 00:57:43,289 [wrapper] ==== wrapper stderr END ====
[2025-07-27 20:57:43]  *** Error codes and diagnostics ***
[2025-07-27 20:57:43]     "exeErrorCode": 0,
[2025-07-27 20:57:43]     "exeErrorDiag": "",
[2025-07-27 20:57:43]     "pilotErrorCode": 0,
[2025-07-27 20:57:43]     "pilotErrorDiag": "",
[2025-07-27 20:57:43]  *** Listing of results directory ***
[2025-07-27 20:57:43] total 352152
[2025-07-27 20:57:43] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 13:39 pilot3.tar.gz
[2025-07-27 20:57:43] -rwx------. 1 boincer umatlas     36292 Jul 27 14:01 runpilot2-wrapper.sh
[2025-07-27 20:57:43] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 14:01 queuedata.json
[2025-07-27 20:57:43] -rw-r--r--. 1 boincer umatlas       100 Jul 27 19:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 20:57:43] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 19:17 run_atlas
[2025-07-27 20:57:43] -rw-r--r--. 1 boincer umatlas       105 Jul 27 19:17 job.xml
[2025-07-27 20:57:43] -rw-r--r--. 2 boincer umatlas 144393511 Jul 27 19:17 EVNT.45743347._002915.pool.root.1
[2025-07-27 20:57:43] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 19:17 start_atlas.sh
[2025-07-27 20:57:43] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 19:17 shared
[2025-07-27 20:57:43] -rw-r--r--. 2 boincer umatlas    542894 Jul 27 19:17 input.tar.gz
[2025-07-27 20:57:43] -rw-r--r--. 1 boincer umatlas         0 Jul 27 19:17 boinc_lockfile
[2025-07-27 20:57:43] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 19:17 pandaJob.out
[2025-07-27 20:57:43] -rw-------. 1 boincer umatlas    980125 Jul 27 19:17 agis_schedconf.cvmfs.json
[2025-07-27 20:57:43] -rw-------. 1 boincer umatlas   1593052 Jul 27 19:17 agis_ddmendpoints.agis.ALL.json
[2025-07-27 20:57:43] drwx------. 4 boincer umatlas      4096 Jul 27 19:17 pilot3
[2025-07-27 20:57:43] -rw-------. 1 boincer umatlas 210609368 Jul 27 20:55 HITS.45743349._053283.pool.root.1
[2025-07-27 20:57:43] -rw-r--r--. 1 boincer umatlas       529 Jul 27 20:55 boinc_task_state.xml
[2025-07-27 20:57:43] -rw-r--r--. 1 boincer umatlas      6895 Jul 27 20:56 init_data.xml
[2025-07-27 20:57:43] -rw-------. 1 boincer umatlas      1023 Jul 27 20:56 memory_monitor_summary.json
[2025-07-27 20:57:43] -rw-------. 1 boincer umatlas    303019 Jul 27 20:56 log.45743349._053283.job.log.tgz.1
[2025-07-27 20:57:43] -rw-------. 1 boincer umatlas        95 Jul 27 20:57 pilot_heartbeat.json
[2025-07-27 20:57:43] -rw-------. 1 boincer umatlas      7766 Jul 27 20:57 heartbeat.json
[2025-07-27 20:57:43] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 20:57 boinc_mmap_file
[2025-07-27 20:57:43] -rw-r--r--. 1 boincer umatlas        27 Jul 27 20:57 wrapper_checkpoint.txt
[2025-07-27 20:57:43] -rw-------. 1 boincer umatlas       822 Jul 27 20:57 pilotlog.txt
[2025-07-27 20:57:43] -rw-------. 1 boincer umatlas    562602 Jul 27 20:57 log.45743349._053283.job.log.1
[2025-07-27 20:57:43] -rw-------. 1 boincer umatlas       357 Jul 27 20:57 output.list
[2025-07-27 20:57:43] -rw-r--r--. 1 boincer umatlas       620 Jul 27 20:57 runtime_log
[2025-07-27 20:57:43] -rw-------. 1 boincer umatlas    880640 Jul 27 20:57 result.tar.gz
[2025-07-27 20:57:43] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 20:57 runtime_log.err
[2025-07-27 20:57:43] -rw-------. 1 boincer umatlas       653 Jul 27 20:57 RRsMDmsrK07n9Rq4apOajLDm4fhM0noT9bVof3QYDmds2KDmuTXDan.diag
[2025-07-27 20:57:43] -rw-r--r--. 1 boincer umatlas     22443 Jul 27 20:57 stderr.txt
[2025-07-27 20:57:43] HITS file was successfully produced:
[2025-07-27 20:57:43] -rw-------. 1 boincer umatlas 210609368 Jul 27 20:55 shared/HITS.pool.root.1
[2025-07-27 20:57:43]  *** Contents of shared directory: ***
[2025-07-27 20:57:43] total 348100
[2025-07-27 20:57:43] -rw-r--r--. 2 boincer umatlas 144393511 Jul 27 19:17 ATLAS.root_0
[2025-07-27 20:57:43] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 19:17 start_atlas.sh
[2025-07-27 20:57:43] -rw-r--r--. 2 boincer umatlas    542894 Jul 27 19:17 input.tar.gz
[2025-07-27 20:57:43] -rw-------. 1 boincer umatlas 210609368 Jul 27 20:55 HITS.pool.root.1
[2025-07-27 20:57:43] -rw-------. 1 boincer umatlas    880640 Jul 27 20:57 result.tar.gz
20:57:45 (479619): run_atlas exited; CPU time 36204.533704
20:57:45 (479619): called boinc_finish(0)

</stderr_txt>
]]>

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