Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:17:25 (3215933): wrapper (7.7.26015): starting
19:17:25 (3215933): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 19:17:25] Arguments: --nthreads 8
[2025-07-27 19:17:25] Threads: 8
[2025-07-27 19:17:25] Checking for CVMFS
[2025-07-27 19:17:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 19:17:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 19:17:25] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 19:17:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 19:17:25] 2.13.0.0 654572 19029 307936 148828 2 24 31337771 32935937 15607 16776704 1 96797799 99.619 139444005 17897 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 19:17:25] CVMFS is ok
[2025-07-27 19:17:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 19:17:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 19:17:25] Further information can be found at the LHC@home message board.
[2025-07-27 19:17:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 19:17:25] Checking for apptainer binary...
[2025-07-27 19:17:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 19:17:25] Running /usr/bin/apptainer --version
[2025-07-27 19:17:25] apptainer version 1.4.1-1.el9
[2025-07-27 19:17:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 19:17:25] c7-3-28.aglt2.org
[2025-07-27 19:17:25] apptainer works
[2025-07-27 19:17:25] Set ATHENA_PROC_NUMBER=8
[2025-07-27 19:17:25] Set ATHENA_CORE_NUMBER=8
[2025-07-27 19:17:25] Starting ATLAS job with PandaID=6747578516
[2025-07-27 19:17:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 20:36:04]  *** The last 200 lines of the pilot log: ***
[2025-07-27 20:36:04]  protocol_id=None
[2025-07-27 20:36:04]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 20:36:04]  replicas=None
[2025-07-27 20:36:04]  scope=mc23_13p6TeV
[2025-07-27 20:36:04]  status=None
[2025-07-27 20:36:04]  status_code=0
[2025-07-27 20:36:04]  storage_token=
[2025-07-27 20:36:04]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6747578516/log.45743349._053261.job.log.tgz.1
[2025-07-27 20:36:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/50/e3/log.45743349._053261.job.log.tgz.1
[2025-07-27 20:36:04]  workdir=None
[2025-07-27 20:36:04] ]
[2025-07-27 20:36:04] 2025-07-28 00:35:21,732 | INFO     | transferring file log.45743349._053261.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6747578516/log.45743349._053261.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 20:36:04] 2025-07-28 00:35:21,732 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6747578516/log.45743349._053261.job.log.tgz.1 /tmp/boinchome/slots/1/log.45743349._053261.job
[2025-07-27 20:36:04] 2025-07-28 00:35:21,764 | INFO     | adding to output.list: log.45743349._053261.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/50/e3/log.45743349._053261.job.log.tg
[2025-07-27 20:36:04] 2025-07-28 00:35:21,765 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 20:36:04] 2025-07-28 00:35:21,765 | INFO     | summary of transferred files:
[2025-07-27 20:36:04] 2025-07-28 00:35:21,765 | INFO     |  -- lfn=log.45743349._053261.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 20:36:04] 2025-07-28 00:35:21,765 | INFO     | stage-out finished correctly
[2025-07-27 20:36:04] 2025-07-28 00:35:21,847 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 20:36:04] 2025-07-28 00:35:23,380 | INFO     | monitor loop #339: job 0:6747578516 is in state 'finished'
[2025-07-27 20:36:04] 2025-07-28 00:35:23,380 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:36:04] 2025-07-28 00:35:24,326 | INFO     | job 6747578516 has state=finished
[2025-07-27 20:36:04] 2025-07-28 00:35:24,326 | INFO     | preparing for final server update for job 6747578516 in state='finished'
[2025-07-27 20:36:04] 2025-07-28 00:35:24,393 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-27 20:36:04] 2025-07-28 00:35:24,394 | INFO     | this job has now completed (state=finished)
[2025-07-27 20:36:04] 2025-07-28 00:35:24,394 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 20:36:04] 2025-07-28 00:35:24,394 | INFO     | log transfer has been attempted: DONE
[2025-07-27 20:36:04] 2025-07-28 00:35:24,394 | INFO     | job 6747578516 has finished - writing final server update
[2025-07-27 20:36:04] 2025-07-28 00:35:24,394 | INFO     | total number of processed events: 400 (read)
[2025-07-27 20:36:04] 2025-07-28 00:35:24,396 | INFO     | executing command: lscpu
[2025-07-27 20:36:04] 2025-07-28 00:35:24,474 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 20:36:04] 2025-07-28 00:35:25,883 | INFO     | monitor loop #340: job 0:6747578516 is in state 'finished'
[2025-07-27 20:36:04] 2025-07-28 00:35:25,884 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:36:04] 2025-07-28 00:35:28,387 | INFO     | monitor loop #341: job 0:6747578516 is in state 'finished'
[2025-07-27 20:36:04] 2025-07-28 00:35:28,387 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:36:04] 2025-07-28 00:35:30,890 | INFO     | monitor loop #342: job 0:6747578516 is in state 'finished'
[2025-07-27 20:36:04] 2025-07-28 00:35:30,892 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:36:04] 2025-07-28 00:35:31,358 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 20:36:04] 2025-07-28 00:35:31,377 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3026.005625
[2025-07-27 20:36:04] 2025-07-28 00:35:31,392 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6747578516/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 20:36:04] 2025-07-28 00:35:31,393 | INFO     | extracted standard info from prmon json
[2025-07-27 20:36:04] 2025-07-28 00:35:31,393 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 20:36:04] 2025-07-28 00:35:31,393 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 20:36:04] 2025-07-28 00:35:31,394 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 20:36:04] 2025-07-28 00:35:31,394 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 20:36:04] 2025-07-28 00:35:31,396 | INFO     | fitting pss+swap vs Time
[2025-07-27 20:36:04] 2025-07-28 00:35:31,396 | INFO     | sum of square deviations: 101843770.0
[2025-07-27 20:36:04] 2025-07-28 00:35:31,397 | INFO     | sum of deviations: -5701453389.0
[2025-07-27 20:36:04] 2025-07-28 00:35:31,397 | INFO     | mean x: 1753660674.0
[2025-07-27 20:36:04] 2025-07-28 00:35:31,397 | INFO     | mean y: 2381959.5362318843
[2025-07-27 20:36:04] 2025-07-28 00:35:31,397 | INFO     | -- intersect: 98176424347.53232
[2025-07-27 20:36:04] 2025-07-28 00:35:31,397 | INFO     | intersect: 98176424347.53232
[2025-07-27 20:36:04] 2025-07-28 00:35:31,397 | INFO     | chi2: 0.06544286889237087
[2025-07-27 20:36:04] 2025-07-28 00:35:31,397 | INFO     | -- intersect: 98176424347.53232
[2025-07-27 20:36:04] 2025-07-28 00:35:31,397 | INFO     | current memory leak: -55.98 B/s (using 69 data points, chi2=0.07)
[2025-07-27 20:36:04] 2025-07-28 00:35:31,398 | INFO     | could have reported an average CPU frequency of 3057 MHz (6 samples)
[2025-07-27 20:36:04] 2025-07-28 00:35:31,398 | INFO     | ..............................
[2025-07-27 20:36:04] 2025-07-28 00:35:31,398 | INFO     | . Timing measurements:
[2025-07-27 20:36:04] 2025-07-28 00:35:31,398 | INFO     | . get job = 0 s
[2025-07-27 20:36:04] 2025-07-28 00:35:31,398 | INFO     | . initial setup = 3 s
[2025-07-27 20:36:04] 2025-07-28 00:35:31,398 | INFO     | . payload setup = 10 s
[2025-07-27 20:36:04] 2025-07-28 00:35:31,398 | INFO     | . stage-in = 0 s
[2025-07-27 20:36:04] 2025-07-28 00:35:31,399 | INFO     | . payload execution = 4628 s
[2025-07-27 20:36:04] 2025-07-28 00:35:31,399 | INFO     | . stage-out = 1 s
[2025-07-27 20:36:04] 2025-07-28 00:35:31,399 | INFO     | . log creation = 0 s
[2025-07-27 20:36:04] 2025-07-28 00:35:31,399 | INFO     | ..............................
[2025-07-27 20:36:04] 2025-07-28 00:35:31,486 | INFO     | 
[2025-07-27 20:36:04] 2025-07-28 00:35:31,486 | INFO     | job summary report
[2025-07-27 20:36:04] 2025-07-28 00:35:31,486 | INFO     | --------------------------------------------------
[2025-07-27 20:36:04] 2025-07-28 00:35:31,486 | INFO     | PanDA job id: 6747578516
[2025-07-27 20:36:04] 2025-07-28 00:35:31,487 | INFO     | task id: 45743349
[2025-07-27 20:36:04] 2025-07-28 00:35:31,487 | INFO     | errors: (none)
[2025-07-27 20:36:04] 2025-07-28 00:35:31,487 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 20:36:04] 2025-07-28 00:35:31,487 | INFO     | pilot state: finished 
[2025-07-27 20:36:04] 2025-07-28 00:35:31,487 | INFO     | transexitcode: 0
[2025-07-27 20:36:04] 2025-07-28 00:35:31,487 | INFO     | exeerrorcode: 0
[2025-07-27 20:36:04] 2025-07-28 00:35:31,487 | INFO     | exeerrordiag: 
[2025-07-27 20:36:04] 2025-07-28 00:35:31,487 | INFO     | exitcode: 0
[2025-07-27 20:36:04] 2025-07-28 00:35:31,487 | INFO     | exitmsg: OK
[2025-07-27 20:36:04] 2025-07-28 00:35:31,487 | INFO     | cpuconsumptiontime: 34489 s
[2025-07-27 20:36:04] 2025-07-28 00:35:31,487 | INFO     | nevents: 400
[2025-07-27 20:36:04] 2025-07-28 00:35:31,487 | INFO     | neventsw: 0
[2025-07-27 20:36:04] 2025-07-28 00:35:31,487 | INFO     | pid: 3227137
[2025-07-27 20:36:04] 2025-07-28 00:35:31,488 | INFO     | pgrp: 3227137
[2025-07-27 20:36:04] 2025-07-28 00:35:31,488 | INFO     | corecount: 8
[2025-07-27 20:36:04] 2025-07-28 00:35:31,488 | INFO     | event service: False
[2025-07-27 20:36:04] 2025-07-28 00:35:31,488 | INFO     | sizes: {0: 2397475, 6: 2397737, 11: 2397765, 4642: 2423793, 4644: 2432847, 4653: 2432985}
[2025-07-27 20:36:04] 2025-07-28 00:35:31,488 | INFO     | --------------------------------------------------
[2025-07-27 20:36:04] 2025-07-28 00:35:31,488 | INFO     | 
[2025-07-27 20:36:04] 2025-07-28 00:35:31,488 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-27 20:36:04] 2025-07-28 00:35:31,518 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 20:36:04] 2025-07-28 00:35:31,518 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 20:36:04] 2025-07-28 00:35:31,518 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 20:36:04] 2025-07-28 00:35:31,519 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 20:36:04] 2025-07-28 00:35:31,519 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 20:36:04] 2025-07-28 00:35:31,519 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 20:36:04] 2025-07-28 00:35:31,520 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 20:36:04] 2025-07-28 00:35:31,520 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 20:36:04] 2025-07-28 00:35:31,520 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 20:36:04] 2025-07-28 00:35:31,520 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 20:36:04] 2025-07-28 00:35:31,520 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 20:36:04] 2025-07-28 00:35:31,520 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 20:36:04] 2025-07-28 00:35:31,520 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 20:36:04] 2025-07-28 00:35:31,520 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 20:36:04] 2025-07-28 00:35:31,520 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 20:36:04] 2025-07-28 00:35:31,520 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 20:36:04] 2025-07-28 00:35:31,520 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 20:36:04] 2025-07-28 00:35:31,521 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 20:36:04] 2025-07-28 00:35:31,521 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 20:36:04] 2025-07-28 00:35:31,521 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 20:36:04] 2025-07-28 00:35:31,522 | INFO     | job 6747578516 has completed (purged errors)
[2025-07-27 20:36:04] 2025-07-28 00:35:31,522 | INFO     | overall cleanup function is called
[2025-07-27 20:36:04] 2025-07-28 00:35:32,530 | INFO     | --- collectZombieJob: --- 10, [3227137]
[2025-07-27 20:36:04] 2025-07-28 00:35:32,531 | INFO     | zombie collector waiting for pid 3227137
[2025-07-27 20:36:04] 2025-07-28 00:35:32,532 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 20:36:04] 2025-07-28 00:35:32,532 | INFO     | collected zombie processes
[2025-07-27 20:36:04] 2025-07-28 00:35:32,532 | INFO     | will attempt to kill all subprocesses of pid=3227137
[2025-07-27 20:36:04] 2025-07-28 00:35:32,992 | INFO     | process IDs to be killed: [3227137] (in reverse order)
[2025-07-27 20:36:04] 2025-07-28 00:35:33,142 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 20:36:04] 2025-07-28 00:35:33,143 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 20:36:04] 2025-07-28 00:35:33,159 | INFO     | did not find any defunct processes belonging to 3227137
[2025-07-27 20:36:04] 2025-07-28 00:35:33,177 | INFO     | did not find any defunct processes belonging to 3227137
[2025-07-27 20:36:04] 2025-07-28 00:35:33,178 | INFO     | ready for new job
[2025-07-27 20:36:04] 2025-07-28 00:35:33,178 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 20:36:04] 2025-07-28 00:35:33,181 | INFO     | ***************************************
[2025-07-27 20:36:04] 2025-07-28 00:35:33,181 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 20:36:04] 2025-07-28 00:35:33,181 | INFO     | ***************************************
[2025-07-27 20:36:04] 2025-07-28 00:35:33,182 | INFO     | 
[2025-07-27 20:36:04] 2025-07-28 00:35:33,200 | INFO     | architecture information:
[2025-07-27 20:36:04] 2025-07-28 00:35:33,201 | INFO     | executing command: cat /etc/os-release
[2025-07-27 20:36:04] 2025-07-28 00:35:33,225 | INFO     | cat /etc/os-release:
[2025-07-27 20:36:04] NAME="CentOS Linux"
[2025-07-27 20:36:04] VERSION="7 (Core)"
[2025-07-27 20:36:04] ID="centos"
[2025-07-27 20:36:04] ID_LIKE="rhel fedora"
[2025-07-27 20:36:04] VERSION_ID="7"
[2025-07-27 20:36:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 20:36:04] ANSI_COLOR="0;31"
[2025-07-27 20:36:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 20:36:04] HOME_URL="https://www.centos.org/"
[2025-07-27 20:36:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 20:36:04] 
[2025-07-27 20:36:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 20:36:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 20:36:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 20:36:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 20:36:04] 
[2025-07-27 20:36:04] 2025-07-28 00:35:33,226 | INFO     | ***************************************
[2025-07-27 20:36:04] 2025-07-28 00:35:33,728 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-27 20:36:04] 2025-07-28 00:35:33,764 | INFO     | sufficient remaining disk space (75739693056 B)
[2025-07-27 20:36:04] 2025-07-28 00:35:33,764 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 20:36:04] 2025-07-28 00:35:33,765 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 20:36:04] 2025-07-28 00:35:33,765 | INFO     | update_server=False
[2025-07-27 20:36:04] 2025-07-28 00:35:33,765 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 20:36:04] 2025-07-28 00:35:33,993 | INFO     | all payload control threads have been joined
[2025-07-27 20:36:04] 2025-07-28 00:35:34,088 | INFO     | all data control threads have been joined
[2025-07-27 20:36:04] 2025-07-28 00:35:34,308 | INFO     | all job control threads have been joined
[2025-07-27 20:36:04] 2025-07-28 00:35:34,402 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 20:36:04] 2025-07-28 00:35:34,403 | INFO     | aborting loop
[2025-07-27 20:36:04] 2025-07-28 00:35:34,770 | INFO     | [job] retrieve thread has finished
[2025-07-27 20:36:04] 2025-07-28 00:35:34,828 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 20:36:04] 2025-07-28 00:35:34,871 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 20:36:04] 2025-07-28 00:35:34,999 | INFO     | [payload] control thread has finished
[2025-07-27 20:36:04] 2025-07-28 00:35:35,016 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 20:36:04] 2025-07-28 00:35:35,093 | INFO     | [data] control thread has finished
[2025-07-27 20:36:04] 2025-07-28 00:35:35,314 | INFO     | [job] control thread has finished
[2025-07-27 20:36:04] 2025-07-28 00:35:35,409 | INFO     | [job] job monitor thread has finished
[2025-07-27 20:36:04] 2025-07-28 00:35:35,514 | INFO     | [data] copytool_in thread has finished
[2025-07-27 20:36:04] 2025-07-28 00:35:35,767 | INFO     | [job] validate thread has finished
[2025-07-27 20:36:04] 2025-07-28 00:35:35,962 | INFO     | [payload] validate_post thread has finished
[2025-07-27 20:36:04] 2025-07-28 00:35:35,981 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 20:36:04] 2025-07-28 00:35:36,078 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 20:36:04] 2025-07-28 00:35:36,244 | INFO     | [payload] failed_post thread has finished
[2025-07-27 20:36:04] 2025-07-28 00:35:36,498 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 20:36:04] 2025-07-28 00:35:36,876 | INFO     | [data] copytool_out thread has finished
[2025-07-27 20:36:04] 2025-07-28 00:35:36,945 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 20:36:04] 2025-07-28 00:35:37,503 | INFO     | [job] queue monitor thread has finished
[2025-07-27 20:36:04] 2025-07-28 00:35:40,951 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 20:36:04] 2025-07-28 00:35:41,113 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139712756762432)>', '<ExcThread(monitor, started 139712115234560)>']
[2025-07-27 20:36:04] 2025-07-28 00:35:46,138 | INFO     | all workflow threads have been joined
[2025-07-27 20:36:04] 2025-07-28 00:35:46,139 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 20:36:04] 2025-07-28 00:35:46,141 | INFO     | traces error code: 0
[2025-07-27 20:36:04] 2025-07-28 00:35:46,142 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 20:36:04] 2025-07-28 00:36:04,085 | INFO     | PID=3219570 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 20:36:04] 2025-07-28 00:36:04,086 | INFO     | .. there are 15 such processes running
[2025-07-27 20:36:04] 2025-07-28 00:36:04,090 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 20:36:04] 2025-07-28 00:36:04,090 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 20:36:04] 2025-07-28 00:36:04,090 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 20:36:04] 2025-07-28 00:36:04,090 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 20:36:04] 2025-07-28 00:36:04,090 | INFO     | [monitor] control thread has ended
[2025-07-27 20:36:04] 2025-07-28 00:36:04,279 [wrapper] ==== pilot stdout END ====
[2025-07-27 20:36:04] 2025-07-28 00:36:04,287 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 20:36:04] 2025-07-28 00:36:04,292 [wrapper] pilotpid: 3219570
[2025-07-27 20:36:04] 2025-07-28 00:36:04,298 [wrapper] Pilot exit status: 0
[2025-07-27 20:36:04] 2025-07-28 00:36:04,315 [wrapper] pandaids: 6747578516
[2025-07-27 20:36:04] 2025-07-28 00:36:04,427 [wrapper] cleanup supervisor_pilot 3522741 3219571
[2025-07-27 20:36:04] 2025-07-28 00:36:04,432 [wrapper] Test setup, not cleaning
[2025-07-27 20:36:04] 2025-07-28 00:36:04,439 [wrapper] apfmon messages muted
[2025-07-27 20:36:04] 2025-07-28 00:36:04,443 [wrapper] ==== wrapper stdout END ====
[2025-07-27 20:36:04] 2025-07-28 00:36:04,447 [wrapper] ==== wrapper stderr END ====
[2025-07-27 20:36:04]  *** Error codes and diagnostics ***
[2025-07-27 20:36:04]     "exeErrorCode": 0,
[2025-07-27 20:36:04]     "exeErrorDiag": "",
[2025-07-27 20:36:04]     "pilotErrorCode": 0,
[2025-07-27 20:36:04]     "pilotErrorDiag": "",
[2025-07-27 20:36:04]  *** Listing of results directory ***
[2025-07-27 20:36:04] total 360392
[2025-07-27 20:36:04] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 13:39 pilot3.tar.gz
[2025-07-27 20:36:04] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 13:58 queuedata.json
[2025-07-27 20:36:04] -rwx------. 1 boincer umatlas     36292 Jul 27 13:59 runpilot2-wrapper.sh
[2025-07-27 20:36:04] -rw-r--r--. 1 boincer umatlas       100 Jul 27 19:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 20:36:04] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 19:17 run_atlas
[2025-07-27 20:36:04] -rw-r--r--. 1 boincer umatlas       105 Jul 27 19:17 job.xml
[2025-07-27 20:36:04] -rw-r--r--. 2 boincer umatlas 151028435 Jul 27 19:17 EVNT.45743347._002913.pool.root.1
[2025-07-27 20:36:04] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 19:17 start_atlas.sh
[2025-07-27 20:36:04] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 19:17 shared
[2025-07-27 20:36:04] -rw-r--r--. 2 boincer umatlas    542901 Jul 27 19:17 input.tar.gz
[2025-07-27 20:36:04] -rw-r--r--. 1 boincer umatlas         0 Jul 27 19:17 boinc_lockfile
[2025-07-27 20:36:04] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 19:17 pandaJob.out
[2025-07-27 20:36:04] -rw-------. 1 boincer umatlas    980125 Jul 27 19:17 agis_schedconf.cvmfs.json
[2025-07-27 20:36:04] -rw-------. 1 boincer umatlas   1593052 Jul 27 19:17 agis_ddmendpoints.agis.ALL.json
[2025-07-27 20:36:04] drwx------. 4 boincer umatlas      4096 Jul 27 19:17 pilot3
[2025-07-27 20:36:04] -rw-r--r--. 1 boincer umatlas      6933 Jul 27 20:29 init_data.xml
[2025-07-27 20:36:04] -rw-------. 1 boincer umatlas 212611328 Jul 27 20:34 HITS.45743349._053261.pool.root.1
[2025-07-27 20:36:04] -rw-r--r--. 1 boincer umatlas       529 Jul 27 20:34 boinc_task_state.xml
[2025-07-27 20:36:04] -rw-------. 1 boincer umatlas      1029 Jul 27 20:35 memory_monitor_summary.json
[2025-07-27 20:36:04] -rw-------. 1 boincer umatlas    305927 Jul 27 20:35 log.45743349._053261.job.log.tgz.1
[2025-07-27 20:36:04] -rw-------. 1 boincer umatlas      7766 Jul 27 20:35 heartbeat.json
[2025-07-27 20:36:04] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 20:36 boinc_mmap_file
[2025-07-27 20:36:04] -rw-r--r--. 1 boincer umatlas        27 Jul 27 20:36 wrapper_checkpoint.txt
[2025-07-27 20:36:04] -rw-------. 1 boincer umatlas        95 Jul 27 20:36 pilot_heartbeat.json
[2025-07-27 20:36:04] -rw-------. 1 boincer umatlas       823 Jul 27 20:36 pilotlog.txt
[2025-07-27 20:36:04] -rw-------. 1 boincer umatlas    456843 Jul 27 20:36 log.45743349._053261.job.log.1
[2025-07-27 20:36:04] -rw-------. 1 boincer umatlas       357 Jul 27 20:36 output.list
[2025-07-27 20:36:04] -rw-r--r--. 1 boincer umatlas       620 Jul 27 20:36 runtime_log
[2025-07-27 20:36:04] -rw-------. 1 boincer umatlas    778240 Jul 27 20:36 result.tar.gz
[2025-07-27 20:36:04] -rw-------. 1 boincer umatlas       652 Jul 27 20:36 tq9MDmUpK07n9Rq4apOajLDm4fhM0noT9bVof3QYDmRs2KDmOEkaQm.diag
[2025-07-27 20:36:04] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 20:36 runtime_log.err
[2025-07-27 20:36:04] -rw-r--r--. 1 boincer umatlas     21823 Jul 27 20:36 stderr.txt
[2025-07-27 20:36:04] HITS file was successfully produced:
[2025-07-27 20:36:04] -rw-------. 1 boincer umatlas 212611328 Jul 27 20:34 shared/HITS.pool.root.1
[2025-07-27 20:36:04]  *** Contents of shared directory: ***
[2025-07-27 20:36:04] total 356440
[2025-07-27 20:36:04] -rw-r--r--. 2 boincer umatlas 151028435 Jul 27 19:17 ATLAS.root_0
[2025-07-27 20:36:04] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 19:17 start_atlas.sh
[2025-07-27 20:36:04] -rw-r--r--. 2 boincer umatlas    542901 Jul 27 19:17 input.tar.gz
[2025-07-27 20:36:04] -rw-------. 1 boincer umatlas 212611328 Jul 27 20:34 HITS.pool.root.1
[2025-07-27 20:36:04] -rw-------. 1 boincer umatlas    778240 Jul 27 20:36 result.tar.gz
20:36:06 (3215933): run_atlas exited; CPU time 34660.259914
20:36:06 (3215933): called boinc_finish(0)

</stderr_txt>
]]>

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