Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:21:42 (1820211): wrapper (7.7.26015): starting
20:21:42 (1820211): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 20:21:42] Arguments: --nthreads 12
[2025-07-27 20:21:42] Threads: 12
[2025-07-27 20:21:42] Checking for CVMFS
[2025-07-27 20:21:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 20:21:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 20:21:42] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 20:21:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 20:21:43] 2.13.0.0 2408171 19079 307808 148829 2 104 28994684 32935937 8804 16776704 0 39098584 99.683 60161359 29720 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 20:21:43] CVMFS is ok
[2025-07-27 20:21:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 20:21:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 20:21:43] Further information can be found at the LHC@home message board.
[2025-07-27 20:21:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 20:21:43] Checking for apptainer binary...
[2025-07-27 20:21:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 20:21:43] Running /usr/bin/apptainer --version
[2025-07-27 20:21:43] apptainer version 1.4.1-1.el9
[2025-07-27 20:21:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 20:21:43] c6-5-7-3.aglt2.org
[2025-07-27 20:21:43] apptainer works
[2025-07-27 20:21:43] Set ATHENA_PROC_NUMBER=12
[2025-07-27 20:21:43] Set ATHENA_CORE_NUMBER=12
[2025-07-27 20:21:43] Starting ATLAS job with PandaID=6747579432
[2025-07-27 20:21:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 21:38:28]  *** The last 200 lines of the pilot log: ***
[2025-07-27 21:38:28]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 21:38:28]  replicas=None
[2025-07-27 21:38:28]  scope=mc23_13p6TeV
[2025-07-27 21:38:28]  status=None
[2025-07-27 21:38:28]  status_code=0
[2025-07-27 21:38:28]  storage_token=
[2025-07-27 21:38:28]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747579432/log.45743349._053618.job.log.tgz.1
[2025-07-27 21:38:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/eb/4d/log.45743349._053618.job.log.tgz.1
[2025-07-27 21:38:28]  workdir=None
[2025-07-27 21:38:28] ]
[2025-07-27 21:38:28] 2025-07-28 01:37:44,866 | INFO     | transferring file log.45743349._053618.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747579432/log.45743349._053618.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 21:38:28] 2025-07-28 01:37:44,866 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747579432/log.45743349._053618.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._053618.job
[2025-07-27 21:38:28] 2025-07-28 01:37:44,885 | INFO     | adding to output.list: log.45743349._053618.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/eb/4d/log.45743349._053618.job.log.tg
[2025-07-27 21:38:28] 2025-07-28 01:37:44,886 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 21:38:28] 2025-07-28 01:37:44,886 | INFO     | summary of transferred files:
[2025-07-27 21:38:28] 2025-07-28 01:37:44,886 | INFO     |  -- lfn=log.45743349._053618.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 21:38:28] 2025-07-28 01:37:44,887 | INFO     | stage-out finished correctly
[2025-07-27 21:38:28] 2025-07-28 01:37:45,983 | INFO     | monitor loop #330: job 0:6747579432 is in state 'finished'
[2025-07-27 21:38:28] 2025-07-28 01:37:45,984 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:38:28] 2025-07-28 01:37:47,783 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 21:38:28] 2025-07-28 01:37:48,486 | INFO     | monitor loop #331: job 0:6747579432 is in state 'finished'
[2025-07-27 21:38:28] 2025-07-28 01:37:48,486 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:38:28] 2025-07-28 01:37:50,811 | INFO     | job 6747579432 has state=finished
[2025-07-27 21:38:28] 2025-07-28 01:37:50,812 | INFO     | preparing for final server update for job 6747579432 in state='finished'
[2025-07-27 21:38:28] 2025-07-28 01:37:50,812 | INFO     | this job has now completed (state=finished)
[2025-07-27 21:38:28] 2025-07-28 01:37:50,812 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 21:38:28] 2025-07-28 01:37:50,812 | INFO     | log transfer has been attempted: DONE
[2025-07-27 21:38:28] 2025-07-28 01:37:50,813 | INFO     | job 6747579432 has finished - writing final server update
[2025-07-27 21:38:28] 2025-07-28 01:37:50,813 | INFO     | total number of processed events: 400 (read)
[2025-07-27 21:38:28] 2025-07-28 01:37:50,813 | INFO     | executing command: lscpu
[2025-07-27 21:38:28] 2025-07-28 01:37:50,877 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 21:38:28] 2025-07-28 01:37:50,989 | INFO     | monitor loop #332: job 0:6747579432 is in state 'finished'
[2025-07-27 21:38:28] 2025-07-28 01:37:50,990 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:38:28] 2025-07-28 01:37:51,546 | INFO     | PID=1824236 has CPU usage=9.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 21:38:28] 2025-07-28 01:37:51,546 | INFO     | .. there are 13 such processes running
[2025-07-27 21:38:28] 2025-07-28 01:37:53,494 | INFO     | monitor loop #333: job 0:6747579432 is in state 'finished'
[2025-07-27 21:38:28] 2025-07-28 01:37:53,494 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:38:28] 2025-07-28 01:37:55,474 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 21:38:28] 2025-07-28 01:37:55,483 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2834.674160714286
[2025-07-27 21:38:28] 2025-07-28 01:37:55,494 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747579432/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 21:38:28] 2025-07-28 01:37:55,495 | INFO     | extracted standard info from prmon json
[2025-07-27 21:38:28] 2025-07-28 01:37:55,495 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 21:38:28] 2025-07-28 01:37:55,495 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 21:38:28] 2025-07-28 01:37:55,496 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 21:38:28] 2025-07-28 01:37:55,496 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 21:38:28] 2025-07-28 01:37:55,498 | INFO     | fitting pss+swap vs Time
[2025-07-27 21:38:28] 2025-07-28 01:37:55,498 | INFO     | sum of square deviations: 97479037.0
[2025-07-27 21:38:28] 2025-07-28 01:37:55,499 | INFO     | sum of deviations: -10259072933.499998
[2025-07-27 21:38:28] 2025-07-28 01:37:55,499 | INFO     | mean x: 1753664490.5
[2025-07-27 21:38:28] 2025-07-28 01:37:55,499 | INFO     | mean y: 2703943.838235294
[2025-07-27 21:38:28] 2025-07-28 01:37:55,499 | INFO     | -- intersect: 184565174631.03442
[2025-07-27 21:38:28] 2025-07-28 01:37:55,499 | INFO     | intersect: 184565174631.03442
[2025-07-27 21:38:28] 2025-07-28 01:37:55,499 | INFO     | chi2: 0.18846434176944005
[2025-07-27 21:38:28] 2025-07-28 01:37:55,500 | INFO     | -- intersect: 184565174631.03442
[2025-07-27 21:38:28] 2025-07-28 01:37:55,500 | INFO     | current memory leak: -105.24 B/s (using 68 data points, chi2=0.19)
[2025-07-27 21:38:28] 2025-07-28 01:37:55,500 | INFO     | could have reported an average CPU frequency of 2814 MHz (6 samples)
[2025-07-27 21:38:28] 2025-07-28 01:37:55,500 | INFO     | ..............................
[2025-07-27 21:38:28] 2025-07-28 01:37:55,500 | INFO     | . Timing measurements:
[2025-07-27 21:38:28] 2025-07-28 01:37:55,501 | INFO     | . get job = 0 s
[2025-07-27 21:38:28] 2025-07-28 01:37:55,501 | INFO     | . initial setup = 2 s
[2025-07-27 21:38:28] 2025-07-28 01:37:55,501 | INFO     | . payload setup = 7 s
[2025-07-27 21:38:28] 2025-07-28 01:37:55,501 | INFO     | . stage-in = 0 s
[2025-07-27 21:38:28] 2025-07-28 01:37:55,501 | INFO     | . payload execution = 4522 s
[2025-07-27 21:38:28] 2025-07-28 01:37:55,501 | INFO     | . stage-out = 0 s
[2025-07-27 21:38:28] 2025-07-28 01:37:55,501 | INFO     | . log creation = 0 s
[2025-07-27 21:38:28] 2025-07-28 01:37:55,501 | INFO     | ..............................
[2025-07-27 21:38:28] 2025-07-28 01:37:55,602 | INFO     | 
[2025-07-27 21:38:28] 2025-07-28 01:37:55,602 | INFO     | job summary report
[2025-07-27 21:38:28] 2025-07-28 01:37:55,603 | INFO     | --------------------------------------------------
[2025-07-27 21:38:28] 2025-07-28 01:37:55,603 | INFO     | PanDA job id: 6747579432
[2025-07-27 21:38:28] 2025-07-28 01:37:55,603 | INFO     | task id: 45743349
[2025-07-27 21:38:28] 2025-07-28 01:37:55,603 | INFO     | errors: (none)
[2025-07-27 21:38:28] 2025-07-28 01:37:55,603 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 21:38:28] 2025-07-28 01:37:55,603 | INFO     | pilot state: finished 
[2025-07-27 21:38:28] 2025-07-28 01:37:55,603 | INFO     | transexitcode: 0
[2025-07-27 21:38:28] 2025-07-28 01:37:55,603 | INFO     | exeerrorcode: 0
[2025-07-27 21:38:28] 2025-07-28 01:37:55,603 | INFO     | exeerrordiag: 
[2025-07-27 21:38:28] 2025-07-28 01:37:55,603 | INFO     | exitcode: 0
[2025-07-27 21:38:28] 2025-07-28 01:37:55,603 | INFO     | exitmsg: OK
[2025-07-27 21:38:28] 2025-07-28 01:37:55,603 | INFO     | cpuconsumptiontime: 46431 s
[2025-07-27 21:38:28] 2025-07-28 01:37:55,603 | INFO     | nevents: 400
[2025-07-27 21:38:28] 2025-07-28 01:37:55,603 | INFO     | neventsw: 0
[2025-07-27 21:38:28] 2025-07-28 01:37:55,603 | INFO     | pid: 1830729
[2025-07-27 21:38:28] 2025-07-28 01:37:55,603 | INFO     | pgrp: 1830729
[2025-07-27 21:38:28] 2025-07-28 01:37:55,603 | INFO     | corecount: 12
[2025-07-27 21:38:28] 2025-07-28 01:37:55,604 | INFO     | event service: False
[2025-07-27 21:38:28] 2025-07-28 01:37:55,604 | INFO     | sizes: {0: 2397355, 1: 2397497, 5: 2397759, 11: 2397815, 4534: 2423854, 4535: 2432852, 4538: 2433036, 4546: 2433230}
[2025-07-27 21:38:28] 2025-07-28 01:37:55,604 | INFO     | --------------------------------------------------
[2025-07-27 21:38:28] 2025-07-28 01:37:55,604 | INFO     | 
[2025-07-27 21:38:28] 2025-07-28 01:37:55,604 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 21:38:28] 2025-07-28 01:37:55,623 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 21:38:28] 2025-07-28 01:37:55,623 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 21:38:28] 2025-07-28 01:37:55,623 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 21:38:28] 2025-07-28 01:37:55,623 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 21:38:28] 2025-07-28 01:37:55,623 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 21:38:28] 2025-07-28 01:37:55,624 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 21:38:28] 2025-07-28 01:37:55,624 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 21:38:28] 2025-07-28 01:37:55,624 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 21:38:28] 2025-07-28 01:37:55,624 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 21:38:28] 2025-07-28 01:37:55,624 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 21:38:28] 2025-07-28 01:37:55,624 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 21:38:28] 2025-07-28 01:37:55,624 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 21:38:28] 2025-07-28 01:37:55,624 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 21:38:28] 2025-07-28 01:37:55,624 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 21:38:28] 2025-07-28 01:37:55,624 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 21:38:28] 2025-07-28 01:37:55,624 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 21:38:28] 2025-07-28 01:37:55,624 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 21:38:28] 2025-07-28 01:37:55,625 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 21:38:28] 2025-07-28 01:37:55,625 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 21:38:28] 2025-07-28 01:37:55,625 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 21:38:28] 2025-07-28 01:37:55,625 | INFO     | job 6747579432 has completed (purged errors)
[2025-07-27 21:38:28] 2025-07-28 01:37:55,625 | INFO     | overall cleanup function is called
[2025-07-27 21:38:28] 2025-07-28 01:37:56,632 | INFO     | --- collectZombieJob: --- 10, [1830729]
[2025-07-27 21:38:28] 2025-07-28 01:37:56,632 | INFO     | zombie collector waiting for pid 1830729
[2025-07-27 21:38:28] 2025-07-28 01:37:56,632 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 21:38:28] 2025-07-28 01:37:56,633 | INFO     | collected zombie processes
[2025-07-27 21:38:28] 2025-07-28 01:37:56,633 | INFO     | will attempt to kill all subprocesses of pid=1830729
[2025-07-27 21:38:28] 2025-07-28 01:37:56,889 | INFO     | process IDs to be killed: [1830729] (in reverse order)
[2025-07-27 21:38:28] 2025-07-28 01:37:56,981 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 21:38:28] 2025-07-28 01:37:56,982 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 21:38:28] 2025-07-28 01:37:56,992 | INFO     | did not find any defunct processes belonging to 1830729
[2025-07-27 21:38:28] 2025-07-28 01:37:57,003 | INFO     | did not find any defunct processes belonging to 1830729
[2025-07-27 21:38:28] 2025-07-28 01:37:57,003 | INFO     | ready for new job
[2025-07-27 21:38:28] 2025-07-28 01:37:57,003 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 21:38:28] 2025-07-28 01:37:57,005 | INFO     | ***************************************
[2025-07-27 21:38:28] 2025-07-28 01:37:57,005 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 21:38:28] 2025-07-28 01:37:57,005 | INFO     | ***************************************
[2025-07-27 21:38:28] 2025-07-28 01:37:57,005 | INFO     | 
[2025-07-27 21:38:28] 2025-07-28 01:37:57,021 | INFO     | architecture information:
[2025-07-27 21:38:28] 2025-07-28 01:37:57,022 | INFO     | executing command: cat /etc/os-release
[2025-07-27 21:38:28] 2025-07-28 01:37:57,040 | INFO     | cat /etc/os-release:
[2025-07-27 21:38:28] NAME="CentOS Linux"
[2025-07-27 21:38:28] VERSION="7 (Core)"
[2025-07-27 21:38:28] ID="centos"
[2025-07-27 21:38:28] ID_LIKE="rhel fedora"
[2025-07-27 21:38:28] VERSION_ID="7"
[2025-07-27 21:38:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 21:38:28] ANSI_COLOR="0;31"
[2025-07-27 21:38:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 21:38:28] HOME_URL="https://www.centos.org/"
[2025-07-27 21:38:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 21:38:28] 
[2025-07-27 21:38:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 21:38:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 21:38:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 21:38:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 21:38:28] 
[2025-07-27 21:38:28] 2025-07-28 01:37:57,041 | INFO     | ***************************************
[2025-07-27 21:38:28] 2025-07-28 01:37:57,543 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 21:38:28] 2025-07-28 01:37:57,559 | INFO     | sufficient remaining disk space (76514590720 B)
[2025-07-27 21:38:28] 2025-07-28 01:37:57,560 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 21:38:28] 2025-07-28 01:37:57,560 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 21:38:28] 2025-07-28 01:37:57,560 | INFO     | update_server=False
[2025-07-27 21:38:28] 2025-07-28 01:37:57,560 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 21:38:28] 2025-07-28 01:37:57,561 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:38:28] 2025-07-28 01:37:57,561 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:38:28] 2025-07-28 01:37:57,561 | INFO     | aborting loop
[2025-07-27 21:38:28] 2025-07-28 01:37:57,771 | INFO     | all job control threads have been joined
[2025-07-27 21:38:28] 2025-07-28 01:37:57,987 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 21:38:28] 2025-07-28 01:37:58,052 | INFO     | all data control threads have been joined
[2025-07-27 21:38:28] 2025-07-28 01:37:58,379 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 21:38:28] 2025-07-28 01:37:58,473 | INFO     | all payload control threads have been joined
[2025-07-27 21:38:28] 2025-07-28 01:37:58,566 | INFO     | [job] retrieve thread has finished
[2025-07-27 21:38:28] 2025-07-28 01:37:58,566 | INFO     | [job] queue monitor thread has finished
[2025-07-27 21:38:28] 2025-07-28 01:37:58,566 | INFO     | [job] job monitor thread has finished
[2025-07-27 21:38:28] 2025-07-28 01:37:58,776 | INFO     | [job] control thread has finished
[2025-07-27 21:38:28] 2025-07-28 01:37:59,031 | INFO     | [payload] failed_post thread has finished
[2025-07-27 21:38:28] 2025-07-28 01:37:59,057 | INFO     | [data] control thread has finished
[2025-07-27 21:38:28] 2025-07-28 01:37:59,183 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 21:38:28] 2025-07-28 01:37:59,203 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 21:38:28] 2025-07-28 01:37:59,320 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 21:38:28] 2025-07-28 01:37:59,433 | INFO     | [payload] validate_post thread has finished
[2025-07-27 21:38:28] 2025-07-28 01:37:59,478 | INFO     | [payload] control thread has finished
[2025-07-27 21:38:28] 2025-07-28 01:37:59,619 | INFO     | [data] copytool_in thread has finished
[2025-07-27 21:38:28] 2025-07-28 01:37:59,932 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 21:38:28] 2025-07-28 01:37:59,949 | INFO     | [job] validate thread has finished
[2025-07-27 21:38:28] 2025-07-28 01:37:59,993 | INFO     | [data] copytool_out thread has finished
[2025-07-27 21:38:28] 2025-07-28 01:38:02,385 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 21:38:28] 2025-07-28 01:38:04,387 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139858455779136)>', '<ExcThread(monitor, started 139857657575168)>']
[2025-07-27 21:38:28] 2025-07-28 01:38:09,412 | INFO     | all workflow threads have been joined
[2025-07-27 21:38:28] 2025-07-28 01:38:09,412 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 21:38:28] 2025-07-28 01:38:09,413 | INFO     | traces error code: 0
[2025-07-27 21:38:28] 2025-07-28 01:38:09,413 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 21:38:28] 2025-07-28 01:38:28,001 | INFO     | PID=1824236 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 21:38:28] 2025-07-28 01:38:28,002 | INFO     | .. there are 13 such processes running
[2025-07-27 21:38:28] 2025-07-28 01:38:28,003 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 21:38:28] 2025-07-28 01:38:28,004 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 21:38:28] 2025-07-28 01:38:28,004 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 21:38:28] 2025-07-28 01:38:28,004 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 21:38:28] 2025-07-28 01:38:28,004 | INFO     | [monitor] control thread has ended
[2025-07-27 21:38:28] 2025-07-28 01:38:28,171 [wrapper] ==== pilot stdout END ====
[2025-07-27 21:38:28] 2025-07-28 01:38:28,173 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 21:38:28] 2025-07-28 01:38:28,176 [wrapper] pilotpid: 1824236
[2025-07-27 21:38:28] 2025-07-28 01:38:28,178 [wrapper] Pilot exit status: 0
[2025-07-27 21:38:28] 2025-07-28 01:38:28,189 [wrapper] pandaids: 6747579432
[2025-07-27 21:38:28] 2025-07-28 01:38:28,247 [wrapper] cleanup supervisor_pilot 2094365 1824237
[2025-07-27 21:38:28] 2025-07-28 01:38:28,250 [wrapper] Test setup, not cleaning
[2025-07-27 21:38:28] 2025-07-28 01:38:28,255 [wrapper] apfmon messages muted
[2025-07-27 21:38:28] 2025-07-28 01:38:28,258 [wrapper] ==== wrapper stdout END ====
[2025-07-27 21:38:28] 2025-07-28 01:38:28,262 [wrapper] ==== wrapper stderr END ====
[2025-07-27 21:38:28]  *** Error codes and diagnostics ***
[2025-07-27 21:38:28]     "exeErrorCode": 0,
[2025-07-27 21:38:28]     "exeErrorDiag": "",
[2025-07-27 21:38:28]     "pilotErrorCode": 0,
[2025-07-27 21:38:28]     "pilotErrorDiag": "",
[2025-07-27 21:38:28]  *** Listing of results directory ***
[2025-07-27 21:38:28] total 349432
[2025-07-27 21:38:28] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 14:08 queuedata.json
[2025-07-27 21:38:28] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 14:08 pilot3.tar.gz
[2025-07-27 21:38:28] -rwx------. 1 boincer umatlas     36292 Jul 27 14:09 runpilot2-wrapper.sh
[2025-07-27 21:38:28] -rw-r--r--. 1 boincer umatlas       100 Jul 27 20:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 21:38:28] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 20:21 run_atlas
[2025-07-27 21:38:28] -rw-r--r--. 1 boincer umatlas       105 Jul 27 20:21 job.xml
[2025-07-27 21:38:28] -rw-r--r--. 2 boincer umatlas 146836923 Jul 27 20:21 EVNT.45743347._002937.pool.root.1
[2025-07-27 21:38:28] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 20:21 start_atlas.sh
[2025-07-27 21:38:28] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 20:21 shared
[2025-07-27 21:38:28] -rw-r--r--. 2 boincer umatlas    542877 Jul 27 20:21 input.tar.gz
[2025-07-27 21:38:28] -rw-r--r--. 1 boincer umatlas         0 Jul 27 20:21 boinc_lockfile
[2025-07-27 21:38:28] -rw-r--r--. 1 boincer umatlas      2560 Jul 27 20:21 pandaJob.out
[2025-07-27 21:38:28] -rw-------. 1 boincer umatlas    980125 Jul 27 20:21 agis_schedconf.cvmfs.json
[2025-07-27 21:38:28] -rw-------. 1 boincer umatlas   1593052 Jul 27 20:21 agis_ddmendpoints.agis.ALL.json
[2025-07-27 21:38:28] drwx------. 4 boincer umatlas      4096 Jul 27 20:21 pilot3
[2025-07-27 21:38:28] -rw-r--r--. 1 boincer umatlas       529 Jul 27 21:37 boinc_task_state.xml
[2025-07-27 21:38:28] -rw-------. 1 boincer umatlas 205516702 Jul 27 21:37 HITS.45743349._053618.pool.root.1
[2025-07-27 21:38:28] -rw-r--r--. 1 boincer umatlas      6841 Jul 27 21:37 init_data.xml
[2025-07-27 21:38:28] -rw-------. 1 boincer umatlas      1036 Jul 27 21:37 memory_monitor_summary.json
[2025-07-27 21:38:28] -rw-------. 1 boincer umatlas    351217 Jul 27 21:37 log.45743349._053618.job.log.tgz.1
[2025-07-27 21:38:28] -rw-------. 1 boincer umatlas      7814 Jul 27 21:37 heartbeat.json
[2025-07-27 21:38:28] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 21:38 boinc_mmap_file
[2025-07-27 21:38:28] -rw-r--r--. 1 boincer umatlas        27 Jul 27 21:38 wrapper_checkpoint.txt
[2025-07-27 21:38:28] -rw-------. 1 boincer umatlas       823 Jul 27 21:38 pilotlog.txt
[2025-07-27 21:38:28] -rw-------. 1 boincer umatlas        95 Jul 27 21:38 pilot_heartbeat.json
[2025-07-27 21:38:28] -rw-------. 1 boincer umatlas    448464 Jul 27 21:38 log.45743349._053618.job.log.1
[2025-07-27 21:38:28] -rw-------. 1 boincer umatlas       357 Jul 27 21:38 output.list
[2025-07-27 21:38:28] -rw-r--r--. 1 boincer umatlas       620 Jul 27 21:38 runtime_log
[2025-07-27 21:38:28] -rw-------. 1 boincer umatlas    819200 Jul 27 21:38 result.tar.gz
[2025-07-27 21:38:28] -rw-r--r--. 1 boincer umatlas      8662 Jul 27 21:38 runtime_log.err
[2025-07-27 21:38:28] -rw-------. 1 boincer umatlas       654 Jul 27 21:38 BAGLDmszK07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmj3VLDmfX5R2m.diag
[2025-07-27 21:38:28] -rw-r--r--. 1 boincer umatlas     22030 Jul 27 21:38 stderr.txt
[2025-07-27 21:38:28] HITS file was successfully produced:
[2025-07-27 21:38:28] -rw-------. 1 boincer umatlas 205516702 Jul 27 21:37 shared/HITS.pool.root.1
[2025-07-27 21:38:28]  *** Contents of shared directory: ***
[2025-07-27 21:38:28] total 345444
[2025-07-27 21:38:28] -rw-r--r--. 2 boincer umatlas 146836923 Jul 27 20:21 ATLAS.root_0
[2025-07-27 21:38:28] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 20:21 start_atlas.sh
[2025-07-27 21:38:28] -rw-r--r--. 2 boincer umatlas    542877 Jul 27 20:21 input.tar.gz
[2025-07-27 21:38:28] -rw-------. 1 boincer umatlas 205516702 Jul 27 21:37 HITS.pool.root.1
[2025-07-27 21:38:28] -rw-------. 1 boincer umatlas    819200 Jul 27 21:38 result.tar.gz
21:38:29 (1820211): run_atlas exited; CPU time 46514.301603
21:38:29 (1820211): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN