Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:11:10 (804198): wrapper (7.7.26015): starting
19:11:10 (804198): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 19:11:10] Arguments: --nthreads 8
[2025-07-27 19:11:10] Threads: 8
[2025-07-27 19:11:10] Checking for CVMFS
[2025-07-27 19:11:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 19:11:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 19:11:10] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 19:11:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 19:11:10] 2.12.6.0 3576101 19006 385768 148827 0 682 27610144 40960000 12154 16776704 0 63285794 99.865 69078976 24652 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 19:11:10] CVMFS is ok
[2025-07-27 19:11:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 19:11:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 19:11:10] Further information can be found at the LHC@home message board.
[2025-07-27 19:11:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 19:11:10] Checking for apptainer binary...
[2025-07-27 19:11:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 19:11:10] Running /usr/bin/apptainer --version
[2025-07-27 19:11:10] apptainer version 1.4.1-1.el9
[2025-07-27 19:11:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 19:11:10] c7-11-12.aglt2.org
[2025-07-27 19:11:10] apptainer works
[2025-07-27 19:11:10] Set ATHENA_PROC_NUMBER=8
[2025-07-27 19:11:10] Set ATHENA_CORE_NUMBER=8
[2025-07-27 19:11:10] Starting ATLAS job with PandaID=6747577612
[2025-07-27 19:11:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 20:35:52]  *** The last 200 lines of the pilot log: ***
[2025-07-27 20:35:52]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 20:35:52]  replicas=None
[2025-07-27 20:35:52]  scope=mc23_13p6TeV
[2025-07-27 20:35:52]  status=None
[2025-07-27 20:35:52]  status_code=0
[2025-07-27 20:35:52]  storage_token=
[2025-07-27 20:35:52]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747577612/log.45743349._053127.job.log.tgz.1
[2025-07-27 20:35:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fb/ad/log.45743349._053127.job.log.tgz.1
[2025-07-27 20:35:52]  workdir=None
[2025-07-27 20:35:52] ]
[2025-07-27 20:35:52] 2025-07-28 00:35:13,250 | INFO     | transferring file log.45743349._053127.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747577612/log.45743349._053127.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 20:35:52] 2025-07-28 00:35:13,250 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747577612/log.45743349._053127.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._053127.job
[2025-07-27 20:35:52] 2025-07-28 00:35:13,271 | INFO     | adding to output.list: log.45743349._053127.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fb/ad/log.45743349._053127.job.log.tg
[2025-07-27 20:35:52] 2025-07-28 00:35:13,272 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 20:35:52] 2025-07-28 00:35:13,272 | INFO     | summary of transferred files:
[2025-07-27 20:35:52] 2025-07-28 00:35:13,272 | INFO     |  -- lfn=log.45743349._053127.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 20:35:52] 2025-07-28 00:35:13,273 | INFO     | stage-out finished correctly
[2025-07-27 20:35:52] 2025-07-28 00:35:13,436 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 20:35:52] 2025-07-28 00:35:14,189 | INFO     | 5033s have passed since pilot start - server update state is 'RUNNING'
[2025-07-27 20:35:52] 2025-07-28 00:35:14,431 | INFO     | monitor loop #373: job 0:6747577612 is in state 'finished'
[2025-07-27 20:35:52] 2025-07-28 00:35:14,432 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:35:52] 2025-07-28 00:35:15,196 | INFO     | job 6747577612 has state=finished
[2025-07-27 20:35:52] 2025-07-28 00:35:15,196 | INFO     | preparing for final server update for job 6747577612 in state='finished'
[2025-07-27 20:35:52] 2025-07-28 00:35:15,197 | INFO     | this job has now completed (state=finished)
[2025-07-27 20:35:52] 2025-07-28 00:35:15,197 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 20:35:52] 2025-07-28 00:35:15,197 | INFO     | log transfer has been attempted: DONE
[2025-07-27 20:35:52] 2025-07-28 00:35:15,197 | INFO     | job 6747577612 has finished - writing final server update
[2025-07-27 20:35:52] 2025-07-28 00:35:15,197 | INFO     | total number of processed events: 400 (read)
[2025-07-27 20:35:52] 2025-07-28 00:35:15,199 | INFO     | executing command: lscpu
[2025-07-27 20:35:52] 2025-07-28 00:35:15,267 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 20:35:52] 2025-07-28 00:35:16,938 | INFO     | monitor loop #374: job 0:6747577612 is in state 'finished'
[2025-07-27 20:35:52] 2025-07-28 00:35:16,939 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:35:52] 2025-07-28 00:35:19,445 | INFO     | monitor loop #375: job 0:6747577612 is in state 'finished'
[2025-07-27 20:35:52] 2025-07-28 00:35:19,447 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:35:52] 2025-07-28 00:35:19,594 | INFO     | PID=807871 has CPU usage=8.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 20:35:52] 2025-07-28 00:35:19,594 | INFO     | .. there are 16 such processes running
[2025-07-27 20:35:52] 2025-07-28 00:35:20,147 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 20:35:52] 2025-07-28 00:35:20,164 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3269.8135156249996
[2025-07-27 20:35:52] 2025-07-28 00:35:20,173 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747577612/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 20:35:52] 2025-07-28 00:35:20,174 | INFO     | extracted standard info from prmon json
[2025-07-27 20:35:52] 2025-07-28 00:35:20,174 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 20:35:52] 2025-07-28 00:35:20,174 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 20:35:52] 2025-07-28 00:35:20,174 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 20:35:52] 2025-07-28 00:35:20,174 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 20:35:52] 2025-07-28 00:35:20,176 | INFO     | fitting pss+swap vs Time
[2025-07-27 20:35:52] 2025-07-28 00:35:20,176 | INFO     | sum of square deviations: 130793150.0
[2025-07-27 20:35:52] 2025-07-28 00:35:20,176 | INFO     | sum of deviations: 535808810.99999994
[2025-07-27 20:35:52] 2025-07-28 00:35:20,176 | INFO     | mean x: 1753660476.0
[2025-07-27 20:35:52] 2025-07-28 00:35:20,176 | INFO     | mean y: 2186000.533333333
[2025-07-27 20:35:52] 2025-07-28 00:35:20,176 | INFO     | -- intersect: -7181880860.3324995
[2025-07-27 20:35:52] 2025-07-28 00:35:20,177 | INFO     | intersect: -7181880860.3324995
[2025-07-27 20:35:52] 2025-07-28 00:35:20,177 | INFO     | chi2: 0.014855778450535314
[2025-07-27 20:35:52] 2025-07-28 00:35:20,177 | INFO     | -- intersect: -7181880860.3324995
[2025-07-27 20:35:52] 2025-07-28 00:35:20,177 | INFO     | current memory leak: 4.10 B/s (using 75 data points, chi2=0.01)
[2025-07-27 20:35:52] 2025-07-28 00:35:20,177 | INFO     | could have reported an average CPU frequency of 3250 MHz (6 samples)
[2025-07-27 20:35:52] 2025-07-28 00:35:20,177 | INFO     | ..............................
[2025-07-27 20:35:52] 2025-07-28 00:35:20,177 | INFO     | . Timing measurements:
[2025-07-27 20:35:52] 2025-07-28 00:35:20,177 | INFO     | . get job = 0 s
[2025-07-27 20:35:52] 2025-07-28 00:35:20,177 | INFO     | . initial setup = 2 s
[2025-07-27 20:35:52] 2025-07-28 00:35:20,177 | INFO     | . payload setup = 8 s
[2025-07-27 20:35:52] 2025-07-28 00:35:20,177 | INFO     | . stage-in = 0 s
[2025-07-27 20:35:52] 2025-07-28 00:35:20,177 | INFO     | . payload execution = 4998 s
[2025-07-27 20:35:52] 2025-07-28 00:35:20,177 | INFO     | . stage-out = 0 s
[2025-07-27 20:35:52] 2025-07-28 00:35:20,178 | INFO     | . log creation = 0 s
[2025-07-27 20:35:52] 2025-07-28 00:35:20,178 | INFO     | ..............................
[2025-07-27 20:35:52] 2025-07-28 00:35:20,250 | INFO     | 
[2025-07-27 20:35:52] 2025-07-28 00:35:20,251 | INFO     | job summary report
[2025-07-27 20:35:52] 2025-07-28 00:35:20,251 | INFO     | --------------------------------------------------
[2025-07-27 20:35:52] 2025-07-28 00:35:20,251 | INFO     | PanDA job id: 6747577612
[2025-07-27 20:35:52] 2025-07-28 00:35:20,251 | INFO     | task id: 45743349
[2025-07-27 20:35:52] 2025-07-28 00:35:20,251 | INFO     | errors: (none)
[2025-07-27 20:35:52] 2025-07-28 00:35:20,251 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 20:35:52] 2025-07-28 00:35:20,251 | INFO     | pilot state: finished 
[2025-07-27 20:35:52] 2025-07-28 00:35:20,251 | INFO     | transexitcode: 0
[2025-07-27 20:35:52] 2025-07-28 00:35:20,251 | INFO     | exeerrorcode: 0
[2025-07-27 20:35:52] 2025-07-28 00:35:20,251 | INFO     | exeerrordiag: 
[2025-07-27 20:35:52] 2025-07-28 00:35:20,251 | INFO     | exitcode: 0
[2025-07-27 20:35:52] 2025-07-28 00:35:20,251 | INFO     | exitmsg: OK
[2025-07-27 20:35:52] 2025-07-28 00:35:20,251 | INFO     | cpuconsumptiontime: 37048 s
[2025-07-27 20:35:52] 2025-07-28 00:35:20,251 | INFO     | nevents: 400
[2025-07-27 20:35:52] 2025-07-28 00:35:20,252 | INFO     | neventsw: 0
[2025-07-27 20:35:52] 2025-07-28 00:35:20,252 | INFO     | pid: 815256
[2025-07-27 20:35:52] 2025-07-28 00:35:20,252 | INFO     | pgrp: 815256
[2025-07-27 20:35:52] 2025-07-28 00:35:20,252 | INFO     | corecount: 8
[2025-07-27 20:35:52] 2025-07-28 00:35:20,252 | INFO     | event service: False
[2025-07-27 20:35:52] 2025-07-28 00:35:20,252 | INFO     | sizes: {0: 2397475, 6: 2397737, 11: 2397765, 5011: 2424036, 5013: 2433090, 5020: 2433228}
[2025-07-27 20:35:52] 2025-07-28 00:35:20,252 | INFO     | --------------------------------------------------
[2025-07-27 20:35:52] 2025-07-28 00:35:20,252 | INFO     | 
[2025-07-27 20:35:52] 2025-07-28 00:35:20,252 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 20:35:52] 2025-07-28 00:35:20,274 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 20:35:52] 2025-07-28 00:35:20,274 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 20:35:52] 2025-07-28 00:35:20,275 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 20:35:52] 2025-07-28 00:35:20,275 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 20:35:52] 2025-07-28 00:35:20,275 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 20:35:52] 2025-07-28 00:35:20,275 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 20:35:52] 2025-07-28 00:35:20,275 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 20:35:52] 2025-07-28 00:35:20,275 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 20:35:52] 2025-07-28 00:35:20,275 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 20:35:52] 2025-07-28 00:35:20,275 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 20:35:52] 2025-07-28 00:35:20,275 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 20:35:52] 2025-07-28 00:35:20,275 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 20:35:52] 2025-07-28 00:35:20,275 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 20:35:52] 2025-07-28 00:35:20,275 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 20:35:52] 2025-07-28 00:35:20,275 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 20:35:52] 2025-07-28 00:35:20,275 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 20:35:52] 2025-07-28 00:35:20,275 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 20:35:52] 2025-07-28 00:35:20,275 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 20:35:52] 2025-07-28 00:35:20,276 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 20:35:52] 2025-07-28 00:35:20,276 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 20:35:52] 2025-07-28 00:35:20,276 | INFO     | job 6747577612 has completed (purged errors)
[2025-07-27 20:35:52] 2025-07-28 00:35:20,276 | INFO     | overall cleanup function is called
[2025-07-27 20:35:52] 2025-07-28 00:35:21,282 | INFO     | --- collectZombieJob: --- 10, [815256]
[2025-07-27 20:35:52] 2025-07-28 00:35:21,283 | INFO     | zombie collector waiting for pid 815256
[2025-07-27 20:35:52] 2025-07-28 00:35:21,283 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 20:35:52] 2025-07-28 00:35:21,283 | INFO     | collected zombie processes
[2025-07-27 20:35:52] 2025-07-28 00:35:21,283 | INFO     | will attempt to kill all subprocesses of pid=815256
[2025-07-27 20:35:52] 2025-07-28 00:35:21,562 | INFO     | process IDs to be killed: [815256] (in reverse order)
[2025-07-27 20:35:52] 2025-07-28 00:35:21,678 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 20:35:52] 2025-07-28 00:35:21,678 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 20:35:52] 2025-07-28 00:35:21,692 | INFO     | did not find any defunct processes belonging to 815256
[2025-07-27 20:35:52] 2025-07-28 00:35:21,703 | INFO     | did not find any defunct processes belonging to 815256
[2025-07-27 20:35:52] 2025-07-28 00:35:21,703 | INFO     | ready for new job
[2025-07-27 20:35:52] 2025-07-28 00:35:21,704 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 20:35:52] 2025-07-28 00:35:21,706 | INFO     | ***************************************
[2025-07-27 20:35:52] 2025-07-28 00:35:21,706 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 20:35:52] 2025-07-28 00:35:21,706 | INFO     | ***************************************
[2025-07-27 20:35:52] 2025-07-28 00:35:21,706 | INFO     | 
[2025-07-27 20:35:52] 2025-07-28 00:35:21,721 | INFO     | architecture information:
[2025-07-27 20:35:52] 2025-07-28 00:35:21,723 | INFO     | executing command: cat /etc/os-release
[2025-07-27 20:35:52] 2025-07-28 00:35:21,742 | INFO     | cat /etc/os-release:
[2025-07-27 20:35:52] NAME="CentOS Linux"
[2025-07-27 20:35:52] VERSION="7 (Core)"
[2025-07-27 20:35:52] ID="centos"
[2025-07-27 20:35:52] ID_LIKE="rhel fedora"
[2025-07-27 20:35:52] VERSION_ID="7"
[2025-07-27 20:35:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 20:35:52] ANSI_COLOR="0;31"
[2025-07-27 20:35:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 20:35:52] HOME_URL="https://www.centos.org/"
[2025-07-27 20:35:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 20:35:52] 
[2025-07-27 20:35:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 20:35:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 20:35:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 20:35:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 20:35:52] 
[2025-07-27 20:35:52] 2025-07-28 00:35:21,742 | INFO     | ***************************************
[2025-07-27 20:35:52] 2025-07-28 00:35:22,244 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 20:35:52] 2025-07-28 00:35:22,267 | INFO     | sufficient remaining disk space (86213918720 B)
[2025-07-27 20:35:52] 2025-07-28 00:35:22,267 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 20:35:52] 2025-07-28 00:35:22,268 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 20:35:52] 2025-07-28 00:35:22,268 | INFO     | update_server=False
[2025-07-27 20:35:52] 2025-07-28 00:35:22,268 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 20:35:52] 2025-07-28 00:35:22,268 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 20:35:52] 2025-07-28 00:35:22,609 | INFO     | all data control threads have been joined
[2025-07-27 20:35:52] 2025-07-28 00:35:22,908 | INFO     | all payload control threads have been joined
[2025-07-27 20:35:52] 2025-07-28 00:35:22,952 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 20:35:52] 2025-07-28 00:35:22,953 | INFO     | aborting loop
[2025-07-27 20:35:52] 2025-07-28 00:35:23,268 | INFO     | [job] retrieve thread has finished
[2025-07-27 20:35:52] 2025-07-28 00:35:23,579 | INFO     | [payload] validate_post thread has finished
[2025-07-27 20:35:52] 2025-07-28 00:35:23,614 | INFO     | [data] control thread has finished
[2025-07-27 20:35:52] 2025-07-28 00:35:23,618 | INFO     | all job control threads have been joined
[2025-07-27 20:35:52] 2025-07-28 00:35:23,695 | INFO     | [data] copytool_in thread has finished
[2025-07-27 20:35:52] 2025-07-28 00:35:23,872 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 20:35:52] 2025-07-28 00:35:23,881 | INFO     | [job] validate thread has finished
[2025-07-27 20:35:52] 2025-07-28 00:35:23,913 | INFO     | [payload] control thread has finished
[2025-07-27 20:35:52] 2025-07-28 00:35:23,958 | INFO     | [job] job monitor thread has finished
[2025-07-27 20:35:52] 2025-07-28 00:35:24,017 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 20:35:52] 2025-07-28 00:35:24,211 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 20:35:52] 2025-07-28 00:35:24,257 | INFO     | [payload] failed_post thread has finished
[2025-07-27 20:35:52] 2025-07-28 00:35:24,274 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 20:35:52] 2025-07-28 00:35:24,277 | INFO     | [data] copytool_out thread has finished
[2025-07-27 20:35:52] 2025-07-28 00:35:24,623 | INFO     | [job] control thread has finished
[2025-07-27 20:35:52] 2025-07-28 00:35:25,260 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 20:35:52] 2025-07-28 00:35:26,266 | INFO     | [job] queue monitor thread has finished
[2025-07-27 20:35:52] 2025-07-28 00:35:28,026 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 20:35:52] 2025-07-28 00:35:32,605 | INFO     | job.realtimelogging is not enabled
[2025-07-27 20:35:52] 2025-07-28 00:35:33,610 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 20:35:52] 2025-07-28 00:35:35,479 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140064670472000)>', '<ExcThread(monitor, started 140064042510080)>']
[2025-07-27 20:35:52] 2025-07-28 00:35:40,504 | INFO     | all workflow threads have been joined
[2025-07-27 20:35:52] 2025-07-28 00:35:40,504 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 20:35:52] 2025-07-28 00:35:40,505 | INFO     | traces error code: 0
[2025-07-27 20:35:52] 2025-07-28 00:35:40,505 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 20:35:52] 2025-07-28 00:35:52,054 | INFO     | PID=807871 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 20:35:52] 2025-07-28 00:35:52,054 | INFO     | .. there are 16 such processes running
[2025-07-27 20:35:52] 2025-07-28 00:35:52,055 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 20:35:52] 2025-07-28 00:35:52,055 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 20:35:52] 2025-07-28 00:35:52,055 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 20:35:52] 2025-07-28 00:35:52,055 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 20:35:52] 2025-07-28 00:35:52,055 | INFO     | [monitor] control thread has ended
[2025-07-27 20:35:52] 2025-07-28 00:35:52,210 [wrapper] ==== pilot stdout END ====
[2025-07-27 20:35:52] 2025-07-28 00:35:52,214 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 20:35:52] 2025-07-28 00:35:52,216 [wrapper] pilotpid: 807871
[2025-07-27 20:35:52] 2025-07-28 00:35:52,219 [wrapper] Pilot exit status: 0
[2025-07-27 20:35:52] 2025-07-28 00:35:52,228 [wrapper] pandaids: 6747577612
[2025-07-27 20:35:52] 2025-07-28 00:35:52,299 [wrapper] cleanup supervisor_pilot 1314506 807872
[2025-07-27 20:35:52] 2025-07-28 00:35:52,304 [wrapper] Test setup, not cleaning
[2025-07-27 20:35:52] 2025-07-28 00:35:52,310 [wrapper] apfmon messages muted
[2025-07-27 20:35:52] 2025-07-28 00:35:52,313 [wrapper] ==== wrapper stdout END ====
[2025-07-27 20:35:52] 2025-07-28 00:35:52,316 [wrapper] ==== wrapper stderr END ====
[2025-07-27 20:35:52]  *** Error codes and diagnostics ***
[2025-07-27 20:35:52]     "exeErrorCode": 0,
[2025-07-27 20:35:52]     "exeErrorDiag": "",
[2025-07-27 20:35:52]     "pilotErrorCode": 0,
[2025-07-27 20:35:52]     "pilotErrorDiag": "",
[2025-07-27 20:35:52]  *** Listing of results directory ***
[2025-07-27 20:35:52] total 354608
[2025-07-27 20:35:52] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 13:39 pilot3.tar.gz
[2025-07-27 20:35:52] -rwx------. 1 boincer umatlas     36292 Jul 27 13:43 runpilot2-wrapper.sh
[2025-07-27 20:35:52] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 13:43 queuedata.json
[2025-07-27 20:35:52] -rw-r--r--. 1 boincer umatlas       100 Jul 27 19:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 20:35:52] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 19:11 run_atlas
[2025-07-27 20:35:52] -rw-r--r--. 1 boincer umatlas       105 Jul 27 19:11 job.xml
[2025-07-27 20:35:52] -rw-r--r--. 2 boincer umatlas 143574373 Jul 27 19:11 EVNT.45743347._002904.pool.root.1
[2025-07-27 20:35:52] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 19:11 start_atlas.sh
[2025-07-27 20:35:52] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 19:11 shared
[2025-07-27 20:35:52] -rw-r--r--. 2 boincer umatlas    542895 Jul 27 19:11 input.tar.gz
[2025-07-27 20:35:52] -rw-r--r--. 1 boincer umatlas         0 Jul 27 19:11 boinc_lockfile
[2025-07-27 20:35:52] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 19:11 pandaJob.out
[2025-07-27 20:35:52] -rw-------. 1 boincer umatlas    980109 Jul 27 19:11 agis_schedconf.cvmfs.json
[2025-07-27 20:35:52] -rw-------. 1 boincer umatlas   1593052 Jul 27 19:11 agis_ddmendpoints.agis.ALL.json
[2025-07-27 20:35:52] drwx------. 4 boincer umatlas      4096 Jul 27 19:11 pilot3
[2025-07-27 20:35:52] -rw-r--r--. 1 boincer umatlas      6897 Jul 27 20:31 init_data.xml
[2025-07-27 20:35:52] -rw-r--r--. 1 boincer umatlas       529 Jul 27 20:34 boinc_task_state.xml
[2025-07-27 20:35:52] -rw-------. 1 boincer umatlas 214049365 Jul 27 20:34 HITS.45743349._053127.pool.root.1
[2025-07-27 20:35:52] -rw-------. 1 boincer umatlas        95 Jul 27 20:35 pilot_heartbeat.json
[2025-07-27 20:35:52] -rw-------. 1 boincer umatlas      1032 Jul 27 20:35 memory_monitor_summary.json
[2025-07-27 20:35:52] -rw-------. 1 boincer umatlas    312290 Jul 27 20:35 log.45743349._053127.job.log.tgz.1
[2025-07-27 20:35:52] -rw-------. 1 boincer umatlas      7774 Jul 27 20:35 heartbeat.json
[2025-07-27 20:35:52] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 20:35 boinc_mmap_file
[2025-07-27 20:35:52] -rw-r--r--. 1 boincer umatlas        27 Jul 27 20:35 wrapper_checkpoint.txt
[2025-07-27 20:35:52] -rw-------. 1 boincer umatlas       822 Jul 27 20:35 pilotlog.txt
[2025-07-27 20:35:52] -rw-------. 1 boincer umatlas    495470 Jul 27 20:35 log.45743349._053127.job.log.1
[2025-07-27 20:35:52] -rw-------. 1 boincer umatlas       357 Jul 27 20:35 output.list
[2025-07-27 20:35:52] -rw-r--r--. 1 boincer umatlas       620 Jul 27 20:35 runtime_log
[2025-07-27 20:35:52] -rw-------. 1 boincer umatlas    829440 Jul 27 20:35 result.tar.gz
[2025-07-27 20:35:52] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 20:35 runtime_log.err
[2025-07-27 20:35:52] -rw-------. 1 boincer umatlas       652 Jul 27 20:35 3uwMDmkaK07n9Rq4apOajLDm4fhM0noT9bVof3QYDmlr2KDmEdELnm.diag
[2025-07-27 20:35:52] -rw-r--r--. 1 boincer umatlas     21955 Jul 27 20:35 stderr.txt
[2025-07-27 20:35:52] HITS file was successfully produced:
[2025-07-27 20:35:52] -rw-------. 1 boincer umatlas 214049365 Jul 27 20:34 shared/HITS.pool.root.1
[2025-07-27 20:35:52]  *** Contents of shared directory: ***
[2025-07-27 20:35:52] total 350612
[2025-07-27 20:35:52] -rw-r--r--. 2 boincer umatlas 143574373 Jul 27 19:11 ATLAS.root_0
[2025-07-27 20:35:52] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 19:11 start_atlas.sh
[2025-07-27 20:35:52] -rw-r--r--. 2 boincer umatlas    542895 Jul 27 19:11 input.tar.gz
[2025-07-27 20:35:52] -rw-------. 1 boincer umatlas 214049365 Jul 27 20:34 HITS.pool.root.1
[2025-07-27 20:35:52] -rw-------. 1 boincer umatlas    829440 Jul 27 20:35 result.tar.gz
20:35:54 (804198): run_atlas exited; CPU time 37069.721212
20:35:54 (804198): called boinc_finish(0)

</stderr_txt>
]]>

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