Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
14:00:58 (1411841): wrapper (7.7.26015): starting
14:00:58 (1411841): wrapper: running run_atlas (--nthreads 3)
[2025-07-28 14:00:58] Arguments: --nthreads 3
[2025-07-28 14:00:58] Threads: 3
[2025-07-28 14:00:58] Checking for CVMFS
[2025-07-28 14:00:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 14:00:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 14:00:58] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 14:00:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 14:00:58] 2.9.2.0 2836443 5470 84024 148847 3 57 21350573 36864000 0 130560 0 3992609 99.990 194938 1855 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-28 14:00:58] CVMFS is ok
[2025-07-28 14:00:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 14:00:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 14:00:58] Further information can be found at the LHC@home message board.
[2025-07-28 14:00:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 14:00:58] Checking for apptainer binary...
[2025-07-28 14:00:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 14:00:58] Running /usr/bin/apptainer --version
[2025-07-28 14:00:58] apptainer version 1.3.6-6.1
[2025-07-28 14:00:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 14:00:58] atlasA303
[2025-07-28 14:00:58] apptainer works
[2025-07-28 14:00:58] Set ATHENA_PROC_NUMBER=3
[2025-07-28 14:00:58] Set ATHENA_CORE_NUMBER=3
[2025-07-28 14:00:58] Starting ATLAS job with PandaID=6747577623
[2025-07-28 14:00:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 15:36:37]  *** The last 200 lines of the pilot log: ***
[2025-07-28 15:36:37]  mtime=0
[2025-07-28 15:36:37]  protocol_id=None
[2025-07-28 15:36:37]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 15:36:37]  replicas=None
[2025-07-28 15:36:37]  scope=mc23_13p6TeV
[2025-07-28 15:36:37]  status=None
[2025-07-28 15:36:37]  status_code=0
[2025-07-28 15:36:37]  storage_token=
[2025-07-28 15:36:37]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6747577623/log.45743349._053138.job.log.tgz.1
[2025-07-28 15:36:37]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/61/b9/log.45743349._053138.job.log.tgz.1
[2025-07-28 15:36:37]  workdir=None
[2025-07-28 15:36:37] ]
[2025-07-28 15:36:37] 2025-07-28 13:35:59,956 | INFO     | transferring file log.45743349._053138.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6747577623/log.45743349._053138.job.log.tgz.1 to /local/data/boinc/
[2025-07-28 15:36:37] 2025-07-28 13:35:59,957 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6747577623/log.45743349._053138.job.log.tgz.1 /local/data/boinc/slots/0/log.45743349._0531
[2025-07-28 15:36:37] 2025-07-28 13:35:59,971 | INFO     | adding to output.list: log.45743349._053138.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/61/b9/log.45743349._053138.job.log.tg
[2025-07-28 15:36:37] 2025-07-28 13:35:59,972 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 15:36:37] 2025-07-28 13:35:59,972 | INFO     | summary of transferred files:
[2025-07-28 15:36:37] 2025-07-28 13:35:59,972 | INFO     |  -- lfn=log.45743349._053138.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 15:36:37] 2025-07-28 13:35:59,972 | INFO     | stage-out finished correctly
[2025-07-28 15:36:37] 2025-07-28 13:36:02,282 | WARNING  | process 1422089 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 15:36:37] 2025-07-28 13:36:02,282 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6747577623/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 15:36:37] 2025-07-28 13:36:02,321 | INFO     | number of running child processes to parent process 1422089: 1
[2025-07-28 15:36:37] 2025-07-28 13:36:02,321 | INFO     | maximum number of monitored processes: 6
[2025-07-28 15:36:37] 2025-07-28 13:36:02,539 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 15:36:37] 2025-07-28 13:36:02,570 | INFO     | job 6747577623 has state=finished
[2025-07-28 15:36:37] 2025-07-28 13:36:02,570 | INFO     | preparing for final server update for job 6747577623 in state='finished'
[2025-07-28 15:36:37] 2025-07-28 13:36:02,570 | INFO     | this job has now completed (state=finished)
[2025-07-28 15:36:37] 2025-07-28 13:36:02,570 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 15:36:37] 2025-07-28 13:36:02,570 | INFO     | log transfer has been attempted: DONE
[2025-07-28 15:36:37] 2025-07-28 13:36:02,571 | INFO     | job 6747577623 has finished - writing final server update
[2025-07-28 15:36:37] 2025-07-28 13:36:02,571 | INFO     | total number of processed events: 400 (read)
[2025-07-28 15:36:37] 2025-07-28 13:36:02,571 | INFO     | executing command: lscpu
[2025-07-28 15:36:37] 2025-07-28 13:36:02,585 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 15:36:37] 2025-07-28 13:36:04,824 | INFO     | monitor loop #438: job 0:6747577623 is in state 'finished'
[2025-07-28 15:36:37] 2025-07-28 13:36:04,824 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 15:36:37] 2025-07-28 13:36:05,034 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 15:36:37] 2025-07-28 13:36:05,035 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3665.8245833333335
[2025-07-28 15:36:37] 2025-07-28 13:36:05,036 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6747577623/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 15:36:37] 2025-07-28 13:36:05,036 | INFO     | extracted standard info from prmon json
[2025-07-28 15:36:37] 2025-07-28 13:36:05,037 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 15:36:37] 2025-07-28 13:36:05,037 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 15:36:37] 2025-07-28 13:36:05,037 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 15:36:37] 2025-07-28 13:36:05,037 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 15:36:37] 2025-07-28 13:36:05,037 | INFO     | fitting pss+swap vs Time
[2025-07-28 15:36:37] 2025-07-28 13:36:05,038 | INFO     | sum of square deviations: 197203697.5
[2025-07-28 15:36:37] 2025-07-28 13:36:05,038 | INFO     | sum of deviations: -6248436546.000001
[2025-07-28 15:36:37] 2025-07-28 13:36:05,038 | INFO     | mean x: 1753706982.5
[2025-07-28 15:36:37] 2025-07-28 13:36:05,038 | INFO     | mean y: 2395474.6279069767
[2025-07-28 15:36:37] 2025-07-28 13:36:05,038 | INFO     | -- intersect: 55568933725.91188
[2025-07-28 15:36:37] 2025-07-28 13:36:05,038 | INFO     | intersect: 55568933725.91188
[2025-07-28 15:36:37] 2025-07-28 13:36:05,038 | INFO     | chi2: 0.11134862827637215
[2025-07-28 15:36:37] 2025-07-28 13:36:05,038 | INFO     | -- intersect: 55568933725.91188
[2025-07-28 15:36:37] 2025-07-28 13:36:05,038 | INFO     | current memory leak: -31.69 B/s (using 86 data points, chi2=0.11)
[2025-07-28 15:36:37] 2025-07-28 13:36:05,038 | INFO     | could have reported an average CPU frequency of 3919 MHz (7 samples)
[2025-07-28 15:36:37] 2025-07-28 13:36:05,038 | INFO     | ..............................
[2025-07-28 15:36:37] 2025-07-28 13:36:05,038 | INFO     | . Timing measurements:
[2025-07-28 15:36:37] 2025-07-28 13:36:05,038 | INFO     | . get job = 0 s
[2025-07-28 15:36:37] 2025-07-28 13:36:05,038 | INFO     | . initial setup = 1 s
[2025-07-28 15:36:37] 2025-07-28 13:36:05,038 | INFO     | . payload setup = 3 s
[2025-07-28 15:36:37] 2025-07-28 13:36:05,038 | INFO     | . stage-in = 0 s
[2025-07-28 15:36:37] 2025-07-28 13:36:05,038 | INFO     | . payload execution = 5675 s
[2025-07-28 15:36:37] 2025-07-28 13:36:05,038 | INFO     | . stage-out = 0 s
[2025-07-28 15:36:37] 2025-07-28 13:36:05,038 | INFO     | . log creation = 0 s
[2025-07-28 15:36:37] 2025-07-28 13:36:05,038 | INFO     | ..............................
[2025-07-28 15:36:37] 2025-07-28 13:36:05,286 | INFO     | 
[2025-07-28 15:36:37] 2025-07-28 13:36:05,286 | INFO     | job summary report
[2025-07-28 15:36:37] 2025-07-28 13:36:05,286 | INFO     | --------------------------------------------------
[2025-07-28 15:36:37] 2025-07-28 13:36:05,286 | INFO     | PanDA job id: 6747577623
[2025-07-28 15:36:37] 2025-07-28 13:36:05,286 | INFO     | task id: 45743349
[2025-07-28 15:36:37] 2025-07-28 13:36:05,286 | INFO     | errors: (none)
[2025-07-28 15:36:37] 2025-07-28 13:36:05,286 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 15:36:37] 2025-07-28 13:36:05,286 | INFO     | pilot state: finished 
[2025-07-28 15:36:37] 2025-07-28 13:36:05,286 | INFO     | transexitcode: 0
[2025-07-28 15:36:37] 2025-07-28 13:36:05,287 | INFO     | exeerrorcode: 0
[2025-07-28 15:36:37] 2025-07-28 13:36:05,287 | INFO     | exeerrordiag: 
[2025-07-28 15:36:37] 2025-07-28 13:36:05,287 | INFO     | exitcode: 0
[2025-07-28 15:36:37] 2025-07-28 13:36:05,287 | INFO     | exitmsg: OK
[2025-07-28 15:36:37] 2025-07-28 13:36:05,287 | INFO     | cpuconsumptiontime: 16395 s
[2025-07-28 15:36:37] 2025-07-28 13:36:05,287 | INFO     | nevents: 400
[2025-07-28 15:36:37] 2025-07-28 13:36:05,287 | INFO     | neventsw: 0
[2025-07-28 15:36:37] 2025-07-28 13:36:05,287 | INFO     | pid: 1422089
[2025-07-28 15:36:37] 2025-07-28 13:36:05,287 | INFO     | pgrp: 1422089
[2025-07-28 15:36:37] 2025-07-28 13:36:05,287 | INFO     | corecount: 3
[2025-07-28 15:36:37] 2025-07-28 13:36:05,287 | INFO     | event service: False
[2025-07-28 15:36:37] 2025-07-28 13:36:05,287 | INFO     | sizes: {0: 2397478, 2: 2397740, 10: 2397768, 5682: 2433580, 5685: 2433580, 5687: 2433774}
[2025-07-28 15:36:37] 2025-07-28 13:36:05,287 | INFO     | --------------------------------------------------
[2025-07-28 15:36:37] 2025-07-28 13:36:05,287 | INFO     | 
[2025-07-28 15:36:37] 2025-07-28 13:36:05,287 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-07-28 15:36:37] 2025-07-28 13:36:05,303 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 15:36:37] 2025-07-28 13:36:05,304 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 15:36:37] 2025-07-28 13:36:05,304 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 15:36:37] 2025-07-28 13:36:05,304 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 15:36:37] 2025-07-28 13:36:05,304 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 15:36:37] 2025-07-28 13:36:05,304 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 15:36:37] 2025-07-28 13:36:05,304 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 15:36:37] 2025-07-28 13:36:05,304 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 15:36:37] 2025-07-28 13:36:05,304 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 15:36:37] 2025-07-28 13:36:05,304 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 15:36:37] 2025-07-28 13:36:05,304 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 15:36:37] 2025-07-28 13:36:05,304 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 15:36:37] 2025-07-28 13:36:05,304 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 15:36:37] 2025-07-28 13:36:05,304 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 15:36:37] 2025-07-28 13:36:05,304 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 15:36:37] 2025-07-28 13:36:05,304 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 15:36:37] 2025-07-28 13:36:05,304 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 15:36:37] 2025-07-28 13:36:05,304 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 15:36:37] 2025-07-28 13:36:05,304 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 15:36:37] 2025-07-28 13:36:05,304 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 15:36:37] 2025-07-28 13:36:05,304 | INFO     | job 6747577623 has completed (purged errors)
[2025-07-28 15:36:37] 2025-07-28 13:36:05,304 | INFO     | overall cleanup function is called
[2025-07-28 15:36:37] 2025-07-28 13:36:06,311 | INFO     | --- collectZombieJob: --- 10, [1422089]
[2025-07-28 15:36:37] 2025-07-28 13:36:06,311 | INFO     | zombie collector waiting for pid 1422089
[2025-07-28 15:36:37] 2025-07-28 13:36:06,311 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 15:36:37] 2025-07-28 13:36:06,312 | INFO     | collected zombie processes
[2025-07-28 15:36:37] 2025-07-28 13:36:06,312 | INFO     | will attempt to kill all subprocesses of pid=1422089
[2025-07-28 15:36:37] 2025-07-28 13:36:06,356 | INFO     | process IDs to be killed: [1422089] (in reverse order)
[2025-07-28 15:36:37] 2025-07-28 13:36:06,383 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 15:36:37] 2025-07-28 13:36:06,383 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 15:36:37] 2025-07-28 13:36:06,384 | INFO     | did not find any defunct processes belonging to 1422089
[2025-07-28 15:36:37] 2025-07-28 13:36:06,385 | INFO     | did not find any defunct processes belonging to 1422089
[2025-07-28 15:36:37] 2025-07-28 13:36:06,385 | INFO     | ready for new job
[2025-07-28 15:36:37] 2025-07-28 13:36:06,385 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 15:36:37] 2025-07-28 13:36:06,386 | INFO     | ***************************************
[2025-07-28 15:36:37] 2025-07-28 13:36:06,386 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 15:36:37] 2025-07-28 13:36:06,386 | INFO     | ***************************************
[2025-07-28 15:36:37] 2025-07-28 13:36:06,386 | INFO     | 
[2025-07-28 15:36:37] 2025-07-28 13:36:06,387 | INFO     | architecture information:
[2025-07-28 15:36:37] 2025-07-28 13:36:06,387 | INFO     | executing command: cat /etc/os-release
[2025-07-28 15:36:37] 2025-07-28 13:36:06,396 | INFO     | cat /etc/os-release:
[2025-07-28 15:36:37] NAME="CentOS Linux"
[2025-07-28 15:36:37] VERSION="7 (Core)"
[2025-07-28 15:36:37] ID="centos"
[2025-07-28 15:36:37] ID_LIKE="rhel fedora"
[2025-07-28 15:36:37] VERSION_ID="7"
[2025-07-28 15:36:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 15:36:37] ANSI_COLOR="0;31"
[2025-07-28 15:36:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 15:36:37] HOME_URL="https://www.centos.org/"
[2025-07-28 15:36:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 15:36:37] 
[2025-07-28 15:36:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 15:36:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 15:36:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 15:36:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 15:36:37] 
[2025-07-28 15:36:37] 2025-07-28 13:36:06,396 | INFO     | ***************************************
[2025-07-28 15:36:37] 2025-07-28 13:36:06,899 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-07-28 15:36:37] 2025-07-28 13:36:06,913 | INFO     | sufficient remaining disk space (380642525184 B)
[2025-07-28 15:36:37] 2025-07-28 13:36:06,913 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 15:36:37] 2025-07-28 13:36:06,913 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 15:36:37] 2025-07-28 13:36:06,913 | INFO     | update_server=False
[2025-07-28 15:36:37] 2025-07-28 13:36:06,913 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 15:36:37] 2025-07-28 13:36:06,913 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 15:36:37] 2025-07-28 13:36:07,328 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-28 15:36:37] 2025-07-28 13:36:07,328 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-28 15:36:37] 2025-07-28 13:36:07,328 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 15:36:37] 2025-07-28 13:36:07,328 | INFO     | will abort loop
[2025-07-28 15:36:37] 2025-07-28 13:36:07,344 | INFO     | all data control threads have been joined
[2025-07-28 15:36:37] 2025-07-28 13:36:07,887 | INFO     | all payload control threads have been joined
[2025-07-28 15:36:37] 2025-07-28 13:36:07,919 | INFO     | [job] retrieve thread has finished
[2025-07-28 15:36:37] 2025-07-28 13:36:07,919 | INFO     | [job] queue monitor thread has finished
[2025-07-28 15:36:37] 2025-07-28 13:36:07,945 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 15:36:37] 2025-07-28 13:36:08,016 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 15:36:37] 2025-07-28 13:36:08,161 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 15:36:37] 2025-07-28 13:36:08,334 | INFO     | [job] job monitor thread has finished
[2025-07-28 15:36:37] 2025-07-28 13:36:08,349 | INFO     | [data] control thread has finished
[2025-07-28 15:36:37] 2025-07-28 13:36:08,353 | INFO     | all job control threads have been joined
[2025-07-28 15:36:37] 2025-07-28 13:36:08,577 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 15:36:37] 2025-07-28 13:36:08,691 | INFO     | [payload] validate_post thread has finished
[2025-07-28 15:36:37] 2025-07-28 13:36:08,813 | INFO     | [payload] failed_post thread has finished
[2025-07-28 15:36:37] 2025-07-28 13:36:08,891 | INFO     | [payload] control thread has finished
[2025-07-28 15:36:37] 2025-07-28 13:36:09,030 | INFO     | [data] copytool_in thread has finished
[2025-07-28 15:36:37] 2025-07-28 13:36:09,355 | INFO     | [job] validate thread has finished
[2025-07-28 15:36:37] 2025-07-28 13:36:09,359 | INFO     | [job] control thread has finished
[2025-07-28 15:36:37] 2025-07-28 13:36:09,417 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 15:36:37] 2025-07-28 13:36:10,022 | INFO     | [data] copytool_out thread has finished
[2025-07-28 15:36:37] 2025-07-28 13:36:12,584 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 15:36:37] 2025-07-28 13:36:17,616 | INFO     | job.realtimelogging is not enabled
[2025-07-28 15:36:37] 2025-07-28 13:36:18,622 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 15:36:37] 2025-07-28 13:36:18,749 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140513044125504)>', '<ExcThread(monitor, started 140512312936192)>']
[2025-07-28 15:36:37] 2025-07-28 13:36:23,775 | INFO     | all workflow threads have been joined
[2025-07-28 15:36:37] 2025-07-28 13:36:23,775 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 15:36:37] 2025-07-28 13:36:23,775 | INFO     | traces error code: 0
[2025-07-28 15:36:37] 2025-07-28 13:36:23,775 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 15:36:37] 2025-07-28 13:36:37,563 | INFO     | PID=1415501 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 15:36:37] 2025-07-28 13:36:37,563 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 15:36:37] 2025-07-28 13:36:37,563 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 15:36:37] 2025-07-28 13:36:37,563 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 15:36:37] 2025-07-28 13:36:37,563 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 15:36:37] 2025-07-28 13:36:37,563 | INFO     | [monitor] control thread has ended
[2025-07-28 15:36:37] 2025-07-28 13:36:37,611 [wrapper] ==== pilot stdout END ====
[2025-07-28 15:36:37] 2025-07-28 13:36:37,614 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 15:36:37] 2025-07-28 13:36:37,616 [wrapper] pilotpid: 1415501
[2025-07-28 15:36:37] 2025-07-28 13:36:37,618 [wrapper] Pilot exit status: 0
[2025-07-28 15:36:37] 2025-07-28 13:36:37,626 [wrapper] pandaids: 6747577623
[2025-07-28 15:36:37] 2025-07-28 13:36:37,644 [wrapper] cleanup supervisor_pilot 1454799 1415502
[2025-07-28 15:36:37] 2025-07-28 13:36:37,646 [wrapper] Test setup, not cleaning
[2025-07-28 15:36:37] 2025-07-28 13:36:37,649 [wrapper] apfmon messages muted
[2025-07-28 15:36:37] 2025-07-28 13:36:37,652 [wrapper] ==== wrapper stdout END ====
[2025-07-28 15:36:37] 2025-07-28 13:36:37,654 [wrapper] ==== wrapper stderr END ====
[2025-07-28 15:36:37]  *** Error codes and diagnostics ***
[2025-07-28 15:36:37]     "exeErrorCode": 0,
[2025-07-28 15:36:37]     "exeErrorDiag": "",
[2025-07-28 15:36:37]     "pilotErrorCode": 0,
[2025-07-28 15:36:37]     "pilotErrorDiag": "",
[2025-07-28 15:36:37]  *** Listing of results directory ***
[2025-07-28 15:36:37] total 353056
[2025-07-28 15:36:37] -rw-r--r-- 1 boinc boinc    530466 Jul 27 19:39 pilot3.tar.gz
[2025-07-28 15:36:37] -rw-r--r-- 1 boinc boinc      5112 Jul 27 19:39 queuedata.json
[2025-07-28 15:36:37] -rwx------ 1 boinc boinc     36292 Jul 27 19:40 runpilot2-wrapper.sh
[2025-07-28 15:36:37] -rw-r--r-- 1 boinc boinc       100 Jul 28 14:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 15:36:37] -rwxr-xr-x 1 boinc boinc      7986 Jul 28 14:00 run_atlas
[2025-07-28 15:36:37] -rw-r--r-- 1 boinc boinc       105 Jul 28 14:00 job.xml
[2025-07-28 15:36:37] -rw-r--r-- 2 boinc boinc 147351083 Jul 28 14:00 EVNT.45743347._002905.pool.root.1
[2025-07-28 15:36:37] -rw-r--r-- 1 boinc boinc      6932 Jul 28 14:00 init_data.xml
[2025-07-28 15:36:37] drwxrwx--x 2 boinc boinc      4096 Jul 28 14:00 shared
[2025-07-28 15:36:37] -rw-r--r-- 2 boinc boinc    542896 Jul 28 14:00 input.tar.gz
[2025-07-28 15:36:37] -rw-r--r-- 2 boinc boinc     15095 Jul 28 14:00 start_atlas.sh
[2025-07-28 15:36:37] -rw-r--r-- 1 boinc boinc         0 Jul 28 14:00 boinc_lockfile
[2025-07-28 15:36:37] -rw-r--r-- 1 boinc boinc      2563 Jul 28 14:00 pandaJob.out
[2025-07-28 15:36:37] -rw------- 1 boinc boinc    978452 Jul 28 14:01 agis_schedconf.cvmfs.json
[2025-07-28 15:36:37] -rw------- 1 boinc boinc   1593052 Jul 28 14:01 agis_ddmendpoints.agis.ALL.json
[2025-07-28 15:36:37] drwx------ 4 boinc boinc      4096 Jul 28 14:01 pilot3
[2025-07-28 15:36:37] -rw------- 1 boinc boinc 208737481 Jul 28 15:35 HITS.45743349._053138.pool.root.1
[2025-07-28 15:36:37] -rw-r--r-- 1 boinc boinc       529 Jul 28 15:35 boinc_task_state.xml
[2025-07-28 15:36:37] -rw------- 1 boinc boinc      1014 Jul 28 15:35 memory_monitor_summary.json
[2025-07-28 15:36:37] -rw------- 1 boinc boinc    233688 Jul 28 15:35 log.45743349._053138.job.log.tgz.1
[2025-07-28 15:36:37] -rw------- 1 boinc boinc      7750 Jul 28 15:36 heartbeat.json
[2025-07-28 15:36:37] -rw-r--r-- 1 boinc boinc      8192 Jul 28 15:36 boinc_mmap_file
[2025-07-28 15:36:37] -rw-r--r-- 1 boinc boinc        27 Jul 28 15:36 wrapper_checkpoint.txt
[2025-07-28 15:36:37] -rw------- 1 boinc boinc       747 Jul 28 15:36 pilotlog.txt
[2025-07-28 15:36:37] -rw------- 1 boinc boinc        95 Jul 28 15:36 pilot_heartbeat.json
[2025-07-28 15:36:37] -rw------- 1 boinc boinc    549693 Jul 28 15:36 log.45743349._053138.job.log.1
[2025-07-28 15:36:37] -rw------- 1 boinc boinc       357 Jul 28 15:36 output.list
[2025-07-28 15:36:37] -rw-r--r-- 1 boinc boinc       620 Jul 28 15:36 runtime_log
[2025-07-28 15:36:37] -rw------- 1 boinc boinc    798720 Jul 28 15:36 result.tar.gz
[2025-07-28 15:36:37] -rw-r--r-- 1 boinc boinc      8749 Jul 28 15:36 runtime_log.err
[2025-07-28 15:36:37] -rw------- 1 boinc boinc       661 Jul 28 15:36 P1fLDmYXK07n9Rq4apOajLDm4fhM0noT9bVof3QYDmBr2KDmqdc5dm.diag
[2025-07-28 15:36:37] -rw-r--r-- 1 boinc boinc     21704 Jul 28 15:36 stderr.txt
[2025-07-28 15:36:37] HITS file was successfully produced:
[2025-07-28 15:36:37] -rw------- 1 boinc boinc 208737481 Jul 28 15:35 shared/HITS.pool.root.1
[2025-07-28 15:36:37]  *** Contents of shared directory: ***
[2025-07-28 15:36:37] total 349084
[2025-07-28 15:36:37] -rw-r--r-- 2 boinc boinc 147351083 Jul 28 14:00 ATLAS.root_0
[2025-07-28 15:36:37] -rw-r--r-- 2 boinc boinc    542896 Jul 28 14:00 input.tar.gz
[2025-07-28 15:36:37] -rw-r--r-- 2 boinc boinc     15095 Jul 28 14:00 start_atlas.sh
[2025-07-28 15:36:37] -rw------- 1 boinc boinc 208737481 Jul 28 15:35 HITS.pool.root.1
[2025-07-28 15:36:37] -rw------- 1 boinc boinc    798720 Jul 28 15:36 result.tar.gz
15:36:39 (1411841): run_atlas exited; CPU time 16414.418899
15:36:39 (1411841): called boinc_finish(0)

</stderr_txt>
]]>

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