Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:49:49 (2660734): wrapper (7.7.26015): starting
18:49:49 (2660734): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 18:49:49] Arguments: --nthreads 8
[2025-07-27 18:49:49] Threads: 8
[2025-07-27 18:49:49] Checking for CVMFS
[2025-07-27 18:49:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 18:49:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 18:49:50] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 18:49:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 18:49:50] 2.12.6.0 2216807 18984 348144 148827 0 672 38859156 40960001 12632 16776704 0 62294265 99.752 77482629 24488 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 18:49:50] CVMFS is ok
[2025-07-27 18:49:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 18:49:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 18:49:50] Further information can be found at the LHC@home message board.
[2025-07-27 18:49:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 18:49:50] Checking for apptainer binary...
[2025-07-27 18:49:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 18:49:50] Running /usr/bin/apptainer --version
[2025-07-27 18:49:50] apptainer version 1.4.1-1.el9
[2025-07-27 18:49:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 18:49:50] c7-11-11.aglt2.org
[2025-07-27 18:49:50] apptainer works
[2025-07-27 18:49:50] Set ATHENA_PROC_NUMBER=8
[2025-07-27 18:49:50] Set ATHENA_CORE_NUMBER=8
[2025-07-27 18:49:50] Starting ATLAS job with PandaID=6747577494
[2025-07-27 18:49:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 20:18:24]  *** The last 200 lines of the pilot log: ***
[2025-07-27 20:18:24]  status_code=0
[2025-07-27 20:18:24]  storage_token=
[2025-07-27 20:18:24]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747577494/log.45743349._053009.job.log.tgz.1
[2025-07-27 20:18:24]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b1/33/log.45743349._053009.job.log.tgz.1
[2025-07-27 20:18:24]  workdir=None
[2025-07-27 20:18:24] ]
[2025-07-27 20:18:24] 2025-07-28 00:17:41,328 | INFO     | transferring file log.45743349._053009.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747577494/log.45743349._053009.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 20:18:24] 2025-07-28 00:17:41,328 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747577494/log.45743349._053009.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._053009.job
[2025-07-27 20:18:24] 2025-07-28 00:17:41,351 | INFO     | adding to output.list: log.45743349._053009.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b1/33/log.45743349._053009.job.log.tg
[2025-07-27 20:18:24] 2025-07-28 00:17:41,352 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 20:18:24] 2025-07-28 00:17:41,352 | INFO     | summary of transferred files:
[2025-07-27 20:18:24] 2025-07-28 00:17:41,352 | INFO     |  -- lfn=log.45743349._053009.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 20:18:24] 2025-07-28 00:17:41,353 | INFO     | stage-out finished correctly
[2025-07-27 20:18:24] 2025-07-28 00:17:41,661 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 20:18:24] 2025-07-28 00:17:42,881 | WARNING  | process 2672730 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 20:18:24] 2025-07-28 00:17:42,881 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747577494/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 20:18:24] 2025-07-28 00:17:43,266 | INFO     | number of running child processes to parent process 2672730: 1
[2025-07-27 20:18:24] 2025-07-28 00:17:43,267 | INFO     | maximum number of monitored processes: 6
[2025-07-27 20:18:24] 2025-07-28 00:17:44,074 | INFO     | job 6747577494 has state=finished
[2025-07-27 20:18:24] 2025-07-28 00:17:44,075 | INFO     | preparing for final server update for job 6747577494 in state='finished'
[2025-07-27 20:18:24] 2025-07-28 00:17:44,075 | INFO     | this job has now completed (state=finished)
[2025-07-27 20:18:24] 2025-07-28 00:17:44,075 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 20:18:24] 2025-07-28 00:17:44,075 | INFO     | log transfer has been attempted: DONE
[2025-07-27 20:18:24] 2025-07-28 00:17:44,075 | INFO     | job 6747577494 has finished - writing final server update
[2025-07-27 20:18:24] 2025-07-28 00:17:44,076 | INFO     | total number of processed events: 400 (read)
[2025-07-27 20:18:24] 2025-07-28 00:17:44,077 | INFO     | executing command: lscpu
[2025-07-27 20:18:24] 2025-07-28 00:17:44,127 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 20:18:24] 2025-07-28 00:17:45,770 | INFO     | monitor loop #373: job 0:6747577494 is in state 'finished'
[2025-07-27 20:18:24] 2025-07-28 00:17:45,770 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:18:24] 2025-07-28 00:17:48,282 | INFO     | monitor loop #374: job 0:6747577494 is in state 'finished'
[2025-07-27 20:18:24] 2025-07-28 00:17:48,282 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:18:24] 2025-07-28 00:17:50,788 | INFO     | monitor loop #375: job 0:6747577494 is in state 'finished'
[2025-07-27 20:18:24] 2025-07-28 00:17:50,788 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:18:24] 2025-07-28 00:17:50,838 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 20:18:24] 2025-07-28 00:17:50,844 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3255.3420312499998
[2025-07-27 20:18:24] 2025-07-28 00:17:50,866 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747577494/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 20:18:24] 2025-07-28 00:17:50,866 | INFO     | extracted standard info from prmon json
[2025-07-27 20:18:24] 2025-07-28 00:17:50,867 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 20:18:24] 2025-07-28 00:17:50,867 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 20:18:24] 2025-07-28 00:17:50,867 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 20:18:24] 2025-07-28 00:17:50,867 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 20:18:24] 2025-07-28 00:17:50,869 | INFO     | fitting pss+swap vs Time
[2025-07-27 20:18:24] 2025-07-28 00:17:50,869 | INFO     | sum of square deviations: 152876131.54430372
[2025-07-27 20:18:24] 2025-07-28 00:17:50,870 | INFO     | sum of deviations: -4314711232.139237
[2025-07-27 20:18:24] 2025-07-28 00:17:50,870 | INFO     | mean x: 1753659319.0759494
[2025-07-27 20:18:24] 2025-07-28 00:17:50,870 | INFO     | mean y: 2249030.189873418
[2025-07-27 20:18:24] 2025-07-28 00:17:50,870 | INFO     | -- intersect: 49496787418.413376
[2025-07-27 20:18:24] 2025-07-28 00:17:50,870 | INFO     | intersect: 49496787418.413376
[2025-07-27 20:18:24] 2025-07-28 00:17:50,870 | INFO     | chi2: 0.05857434056733192
[2025-07-27 20:18:24] 2025-07-28 00:17:50,870 | INFO     | -- intersect: 49496787418.413376
[2025-07-27 20:18:24] 2025-07-28 00:17:50,870 | INFO     | current memory leak: -28.22 B/s (using 79 data points, chi2=0.06)
[2025-07-27 20:18:24] 2025-07-28 00:17:50,871 | INFO     | could have reported an average CPU frequency of 3260 MHz (6 samples)
[2025-07-27 20:18:24] 2025-07-28 00:17:50,871 | INFO     | ..............................
[2025-07-27 20:18:24] 2025-07-28 00:17:50,871 | INFO     | . Timing measurements:
[2025-07-27 20:18:24] 2025-07-28 00:17:50,871 | INFO     | . get job = 0 s
[2025-07-27 20:18:24] 2025-07-28 00:17:50,871 | INFO     | . initial setup = 2 s
[2025-07-27 20:18:24] 2025-07-28 00:17:50,871 | INFO     | . payload setup = 8 s
[2025-07-27 20:18:24] 2025-07-28 00:17:50,871 | INFO     | . stage-in = 0 s
[2025-07-27 20:18:24] 2025-07-28 00:17:50,871 | INFO     | . payload execution = 5228 s
[2025-07-27 20:18:24] 2025-07-28 00:17:50,871 | INFO     | . stage-out = 0 s
[2025-07-27 20:18:24] 2025-07-28 00:17:50,871 | INFO     | . log creation = 0 s
[2025-07-27 20:18:24] 2025-07-28 00:17:50,871 | INFO     | ..............................
[2025-07-27 20:18:24] 2025-07-28 00:17:50,953 | INFO     | 
[2025-07-27 20:18:24] 2025-07-28 00:17:50,955 | INFO     | job summary report
[2025-07-27 20:18:24] 2025-07-28 00:17:50,955 | INFO     | --------------------------------------------------
[2025-07-27 20:18:24] 2025-07-28 00:17:50,955 | INFO     | PanDA job id: 6747577494
[2025-07-27 20:18:24] 2025-07-28 00:17:50,955 | INFO     | task id: 45743349
[2025-07-27 20:18:24] 2025-07-28 00:17:50,956 | INFO     | errors: (none)
[2025-07-27 20:18:24] 2025-07-28 00:17:50,956 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 20:18:24] 2025-07-28 00:17:50,956 | INFO     | pilot state: finished 
[2025-07-27 20:18:24] 2025-07-28 00:17:50,956 | INFO     | transexitcode: 0
[2025-07-27 20:18:24] 2025-07-28 00:17:50,956 | INFO     | exeerrorcode: 0
[2025-07-27 20:18:24] 2025-07-28 00:17:50,956 | INFO     | exeerrordiag: 
[2025-07-27 20:18:24] 2025-07-28 00:17:50,956 | INFO     | exitcode: 0
[2025-07-27 20:18:24] 2025-07-28 00:17:50,956 | INFO     | exitmsg: OK
[2025-07-27 20:18:24] 2025-07-28 00:17:50,956 | INFO     | cpuconsumptiontime: 36587 s
[2025-07-27 20:18:24] 2025-07-28 00:17:50,956 | INFO     | nevents: 400
[2025-07-27 20:18:24] 2025-07-28 00:17:50,956 | INFO     | neventsw: 0
[2025-07-27 20:18:24] 2025-07-28 00:17:50,956 | INFO     | pid: 2672730
[2025-07-27 20:18:24] 2025-07-28 00:17:50,956 | INFO     | pgrp: 2672730
[2025-07-27 20:18:24] 2025-07-28 00:17:50,956 | INFO     | corecount: 8
[2025-07-27 20:18:24] 2025-07-28 00:17:50,956 | INFO     | event service: False
[2025-07-27 20:18:24] 2025-07-28 00:17:50,956 | INFO     | sizes: {0: 2397469, 6: 2397731, 11: 2397759, 5240: 2424265, 5241: 2433318, 5242: 2433318, 5251: 2433640}
[2025-07-27 20:18:24] 2025-07-28 00:17:50,956 | INFO     | --------------------------------------------------
[2025-07-27 20:18:24] 2025-07-28 00:17:50,956 | INFO     | 
[2025-07-27 20:18:24] 2025-07-28 00:17:50,957 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 20:18:24] 2025-07-28 00:17:50,990 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 20:18:24] 2025-07-28 00:17:50,990 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 20:18:24] 2025-07-28 00:17:50,991 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 20:18:24] 2025-07-28 00:17:50,991 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 20:18:24] 2025-07-28 00:17:50,991 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 20:18:24] 2025-07-28 00:17:50,991 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 20:18:24] 2025-07-28 00:17:50,991 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 20:18:24] 2025-07-28 00:17:50,992 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 20:18:24] 2025-07-28 00:17:50,992 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 20:18:24] 2025-07-28 00:17:50,992 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 20:18:24] 2025-07-28 00:17:50,992 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 20:18:24] 2025-07-28 00:17:50,992 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 20:18:24] 2025-07-28 00:17:50,992 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 20:18:24] 2025-07-28 00:17:50,992 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 20:18:24] 2025-07-28 00:17:50,992 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 20:18:24] 2025-07-28 00:17:50,992 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 20:18:24] 2025-07-28 00:17:50,992 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 20:18:24] 2025-07-28 00:17:50,992 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 20:18:24] 2025-07-28 00:17:50,993 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 20:18:24] 2025-07-28 00:17:50,993 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 20:18:24] 2025-07-28 00:17:50,993 | INFO     | job 6747577494 has completed (purged errors)
[2025-07-27 20:18:24] 2025-07-28 00:17:50,993 | INFO     | overall cleanup function is called
[2025-07-27 20:18:24] 2025-07-28 00:17:52,001 | INFO     | --- collectZombieJob: --- 10, [2672730]
[2025-07-27 20:18:24] 2025-07-28 00:17:52,002 | INFO     | zombie collector waiting for pid 2672730
[2025-07-27 20:18:24] 2025-07-28 00:17:52,002 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 20:18:24] 2025-07-28 00:17:52,002 | INFO     | collected zombie processes
[2025-07-27 20:18:24] 2025-07-28 00:17:52,002 | INFO     | will attempt to kill all subprocesses of pid=2672730
[2025-07-27 20:18:24] 2025-07-28 00:17:52,392 | INFO     | process IDs to be killed: [2672730] (in reverse order)
[2025-07-27 20:18:24] 2025-07-28 00:17:52,506 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 20:18:24] 2025-07-28 00:17:52,507 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 20:18:24] 2025-07-28 00:17:52,519 | INFO     | did not find any defunct processes belonging to 2672730
[2025-07-27 20:18:24] 2025-07-28 00:17:52,528 | INFO     | did not find any defunct processes belonging to 2672730
[2025-07-27 20:18:24] 2025-07-28 00:17:52,528 | INFO     | ready for new job
[2025-07-27 20:18:24] 2025-07-28 00:17:52,528 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 20:18:24] 2025-07-28 00:17:52,531 | INFO     | ***************************************
[2025-07-27 20:18:24] 2025-07-28 00:17:52,531 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 20:18:24] 2025-07-28 00:17:52,531 | INFO     | ***************************************
[2025-07-27 20:18:24] 2025-07-28 00:17:52,531 | INFO     | 
[2025-07-27 20:18:24] 2025-07-28 00:17:52,549 | INFO     | architecture information:
[2025-07-27 20:18:24] 2025-07-28 00:17:52,551 | INFO     | executing command: cat /etc/os-release
[2025-07-27 20:18:24] 2025-07-28 00:17:52,582 | INFO     | cat /etc/os-release:
[2025-07-27 20:18:24] NAME="CentOS Linux"
[2025-07-27 20:18:24] VERSION="7 (Core)"
[2025-07-27 20:18:24] ID="centos"
[2025-07-27 20:18:24] ID_LIKE="rhel fedora"
[2025-07-27 20:18:24] VERSION_ID="7"
[2025-07-27 20:18:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 20:18:24] ANSI_COLOR="0;31"
[2025-07-27 20:18:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 20:18:24] HOME_URL="https://www.centos.org/"
[2025-07-27 20:18:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 20:18:24] 
[2025-07-27 20:18:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 20:18:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 20:18:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 20:18:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 20:18:24] 
[2025-07-27 20:18:24] 2025-07-28 00:17:52,583 | INFO     | ***************************************
[2025-07-27 20:18:24] 2025-07-28 00:17:53,086 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 20:18:24] 2025-07-28 00:17:53,107 | INFO     | sufficient remaining disk space (86054535168 B)
[2025-07-27 20:18:24] 2025-07-28 00:17:53,108 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 20:18:24] 2025-07-28 00:17:53,108 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 20:18:24] 2025-07-28 00:17:53,108 | INFO     | update_server=False
[2025-07-27 20:18:24] 2025-07-28 00:17:53,108 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 20:18:24] 2025-07-28 00:17:53,108 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 20:18:24] 2025-07-28 00:17:53,293 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 20:18:24] 2025-07-28 00:17:53,293 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 20:18:24] 2025-07-28 00:17:53,293 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 20:18:24] 2025-07-28 00:17:53,293 | INFO     | will abort loop
[2025-07-27 20:18:24] 2025-07-28 00:17:53,589 | INFO     | all data control threads have been joined
[2025-07-27 20:18:24] 2025-07-28 00:17:53,669 | INFO     | all payload control threads have been joined
[2025-07-27 20:18:24] 2025-07-28 00:17:54,113 | INFO     | [job] retrieve thread has finished
[2025-07-27 20:18:24] 2025-07-28 00:17:54,173 | INFO     | [job] validate thread has finished
[2025-07-27 20:18:24] 2025-07-28 00:17:54,299 | INFO     | [job] job monitor thread has finished
[2025-07-27 20:18:24] 2025-07-28 00:17:54,466 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 20:18:24] 2025-07-28 00:17:54,493 | INFO     | [payload] failed_post thread has finished
[2025-07-27 20:18:24] 2025-07-28 00:17:54,545 | INFO     | [payload] validate_post thread has finished
[2025-07-27 20:18:24] 2025-07-28 00:17:54,595 | INFO     | [data] control thread has finished
[2025-07-27 20:18:24] 2025-07-28 00:17:54,621 | INFO     | all job control threads have been joined
[2025-07-27 20:18:24] 2025-07-28 00:17:54,651 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 20:18:24] 2025-07-28 00:17:54,676 | INFO     | [payload] control thread has finished
[2025-07-27 20:18:24] 2025-07-28 00:17:54,738 | INFO     | [data] copytool_in thread has finished
[2025-07-27 20:18:24] 2025-07-28 00:17:54,923 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 20:18:24] 2025-07-28 00:17:55,329 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 20:18:24] 2025-07-28 00:17:55,626 | INFO     | [job] control thread has finished
[2025-07-27 20:18:24] 2025-07-28 00:17:55,967 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 20:18:24] 2025-07-28 00:17:56,473 | INFO     | [data] copytool_out thread has finished
[2025-07-27 20:18:24] 2025-07-28 00:17:56,973 | INFO     | [job] queue monitor thread has finished
[2025-07-27 20:18:24] 2025-07-28 00:17:57,126 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 20:18:24] 2025-07-28 00:18:03,758 | INFO     | job.realtimelogging is not enabled
[2025-07-27 20:18:24] 2025-07-28 00:18:04,764 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 20:18:24] 2025-07-28 00:18:06,719 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139961788835648)>', '<ExcThread(monitor, started 139960627750656)>']
[2025-07-27 20:18:24] 2025-07-28 00:18:11,743 | INFO     | all workflow threads have been joined
[2025-07-27 20:18:24] 2025-07-28 00:18:11,744 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 20:18:24] 2025-07-28 00:18:11,746 | INFO     | traces error code: 0
[2025-07-27 20:18:24] 2025-07-28 00:18:11,746 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 20:18:24] 2025-07-28 00:18:23,786 | INFO     | PID=2664416 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 20:18:24] 2025-07-28 00:18:23,786 | INFO     | .. there are 12 such processes running
[2025-07-27 20:18:24] 2025-07-28 00:18:23,786 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 20:18:24] 2025-07-28 00:18:23,786 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 20:18:24] 2025-07-28 00:18:23,786 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 20:18:24] 2025-07-28 00:18:23,786 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 20:18:24] 2025-07-28 00:18:23,787 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 20:18:24] 2025-07-28 00:18:23,787 | INFO     | [monitor] control thread has ended
[2025-07-27 20:18:24] 2025-07-28 00:18:23,954 [wrapper] ==== pilot stdout END ====
[2025-07-27 20:18:24] 2025-07-28 00:18:23,959 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 20:18:24] 2025-07-28 00:18:23,963 [wrapper] pilotpid: 2664416
[2025-07-27 20:18:24] 2025-07-28 00:18:23,972 [wrapper] Pilot exit status: 0
[2025-07-27 20:18:24] 2025-07-28 00:18:23,983 [wrapper] pandaids: 6747577494
[2025-07-27 20:18:24] 2025-07-28 00:18:24,071 [wrapper] cleanup supervisor_pilot 2916318 2664417
[2025-07-27 20:18:24] 2025-07-28 00:18:24,085 [wrapper] Test setup, not cleaning
[2025-07-27 20:18:24] 2025-07-28 00:18:24,093 [wrapper] apfmon messages muted
[2025-07-27 20:18:24] 2025-07-28 00:18:24,104 [wrapper] ==== wrapper stdout END ====
[2025-07-27 20:18:24] 2025-07-28 00:18:24,111 [wrapper] ==== wrapper stderr END ====
[2025-07-27 20:18:24]  *** Error codes and diagnostics ***
[2025-07-27 20:18:24]     "exeErrorCode": 0,
[2025-07-27 20:18:24]     "exeErrorDiag": "",
[2025-07-27 20:18:24]     "pilotErrorCode": 0,
[2025-07-27 20:18:24]     "pilotErrorDiag": "",
[2025-07-27 20:18:24]  *** Listing of results directory ***
[2025-07-27 20:18:24] total 350780
[2025-07-27 20:18:24] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 13:29 pilot3.tar.gz
[2025-07-27 20:18:24] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 13:34 queuedata.json
[2025-07-27 20:18:24] -rwx------. 1 boincer umatlas     36292 Jul 27 13:35 runpilot2-wrapper.sh
[2025-07-27 20:18:24] -rw-r--r--. 1 boincer umatlas       100 Jul 27 18:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 20:18:24] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 18:49 run_atlas
[2025-07-27 20:18:24] -rw-r--r--. 1 boincer umatlas       105 Jul 27 18:49 job.xml
[2025-07-27 20:18:24] -rw-r--r--. 2 boincer umatlas 146186353 Jul 27 18:49 EVNT.45743347._002889.pool.root.1
[2025-07-27 20:18:24] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 18:49 start_atlas.sh
[2025-07-27 20:18:24] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 18:49 shared
[2025-07-27 20:18:24] -rw-r--r--. 2 boincer umatlas    542886 Jul 27 18:49 input.tar.gz
[2025-07-27 20:18:24] -rw-r--r--. 1 boincer umatlas         0 Jul 27 18:49 boinc_lockfile
[2025-07-27 20:18:24] -rw-r--r--. 1 boincer umatlas      2560 Jul 27 18:49 pandaJob.out
[2025-07-27 20:18:24] -rw-------. 1 boincer umatlas    980109 Jul 27 18:50 agis_schedconf.cvmfs.json
[2025-07-27 20:18:24] -rw-------. 1 boincer umatlas   1593052 Jul 27 18:50 agis_ddmendpoints.agis.ALL.json
[2025-07-27 20:18:24] drwx------. 4 boincer umatlas      4096 Jul 27 18:50 pilot3
[2025-07-27 20:18:24] -rw-r--r--. 1 boincer umatlas      6897 Jul 27 20:10 init_data.xml
[2025-07-27 20:18:24] -rw-------. 1 boincer umatlas 207530325 Jul 27 20:17 HITS.45743349._053009.pool.root.1
[2025-07-27 20:18:24] -rw-r--r--. 1 boincer umatlas       529 Jul 27 20:17 boinc_task_state.xml
[2025-07-27 20:18:24] -rw-------. 1 boincer umatlas      1031 Jul 27 20:17 memory_monitor_summary.json
[2025-07-27 20:18:24] -rw-------. 1 boincer umatlas        95 Jul 27 20:17 pilot_heartbeat.json
[2025-07-27 20:18:24] -rw-------. 1 boincer umatlas    297786 Jul 27 20:17 log.45743349._053009.job.log.tgz.1
[2025-07-27 20:18:24] -rw-------. 1 boincer umatlas      7771 Jul 27 20:17 heartbeat.json
[2025-07-27 20:18:24] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 20:18 boinc_mmap_file
[2025-07-27 20:18:24] -rw-------. 1 boincer umatlas       893 Jul 27 20:18 pilotlog.txt
[2025-07-27 20:18:24] -rw-r--r--. 1 boincer umatlas        27 Jul 27 20:18 wrapper_checkpoint.txt
[2025-07-27 20:18:24] -rw-------. 1 boincer umatlas    505527 Jul 27 20:18 log.45743349._053009.job.log.1
[2025-07-27 20:18:24] -rw-------. 1 boincer umatlas       357 Jul 27 20:18 output.list
[2025-07-27 20:18:24] -rw-r--r--. 1 boincer umatlas       620 Jul 27 20:18 runtime_log
[2025-07-27 20:18:24] -rw-------. 1 boincer umatlas    819200 Jul 27 20:18 result.tar.gz
[2025-07-27 20:18:24] -rw-------. 1 boincer umatlas       652 Jul 27 20:18 YGuNDmuSK07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmczVLDmFk7C4m.diag
[2025-07-27 20:18:24] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 20:18 runtime_log.err
[2025-07-27 20:18:24] -rw-r--r--. 1 boincer umatlas     22119 Jul 27 20:18 stderr.txt
[2025-07-27 20:18:24] HITS file was successfully produced:
[2025-07-27 20:18:24] -rw-------. 1 boincer umatlas 207530325 Jul 27 20:17 shared/HITS.pool.root.1
[2025-07-27 20:18:24]  *** Contents of shared directory: ***
[2025-07-27 20:18:24] total 346788
[2025-07-27 20:18:24] -rw-r--r--. 2 boincer umatlas 146186353 Jul 27 18:49 ATLAS.root_0
[2025-07-27 20:18:24] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 18:49 start_atlas.sh
[2025-07-27 20:18:24] -rw-r--r--. 2 boincer umatlas    542886 Jul 27 18:49 input.tar.gz
[2025-07-27 20:18:24] -rw-------. 1 boincer umatlas 207530325 Jul 27 20:17 HITS.pool.root.1
[2025-07-27 20:18:24] -rw-------. 1 boincer umatlas    819200 Jul 27 20:18 result.tar.gz
20:18:25 (2660734): run_atlas exited; CPU time 36665.042848
20:18:25 (2660734): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN