Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:48:49 (854463): wrapper (7.7.26015): starting
18:48:49 (854463): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 18:48:49] Arguments: --nthreads 8
[2025-07-27 18:48:49] Threads: 8
[2025-07-27 18:48:49] Checking for CVMFS
[2025-07-27 18:48:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 18:48:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 18:48:49] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 18:48:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 18:48:49] 2.12.6.0 374543 18984 383372 148827 3 323 22492160 40960001 7442 16776704 2 63934443 99.782 75369709 22009 http://cvmfs-s1.hpc.swin.edu.au:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 18:48:49] CVMFS is ok
[2025-07-27 18:48:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 18:48:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 18:48:49] Further information can be found at the LHC@home message board.
[2025-07-27 18:48:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 18:48:49] Checking for apptainer binary...
[2025-07-27 18:48:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 18:48:49] Running /usr/bin/apptainer --version
[2025-07-27 18:48:49] apptainer version 1.4.1-1.el9
[2025-07-27 18:48:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 18:48:49] c7-10-13.aglt2.org
[2025-07-27 18:48:49] apptainer works
[2025-07-27 18:48:49] Set ATHENA_PROC_NUMBER=8
[2025-07-27 18:48:49] Set ATHENA_CORE_NUMBER=8
[2025-07-27 18:48:49] Starting ATLAS job with PandaID=6747577530
[2025-07-27 18:48:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 20:12:57]  *** The last 200 lines of the pilot log: ***
[2025-07-27 20:12:57]  protocol_id=None
[2025-07-27 20:12:57]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 20:12:57]  replicas=None
[2025-07-27 20:12:57]  scope=mc23_13p6TeV
[2025-07-27 20:12:57]  status=None
[2025-07-27 20:12:57]  status_code=0
[2025-07-27 20:12:57]  storage_token=
[2025-07-27 20:12:57]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6747577530/log.45743349._053045.job.log.tgz.1
[2025-07-27 20:12:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bd/4d/log.45743349._053045.job.log.tgz.1
[2025-07-27 20:12:57]  workdir=None
[2025-07-27 20:12:57] ]
[2025-07-27 20:12:57] 2025-07-28 00:12:18,006 | INFO     | transferring file log.45743349._053045.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6747577530/log.45743349._053045.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 20:12:57] 2025-07-28 00:12:18,006 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6747577530/log.45743349._053045.job.log.tgz.1 /tmp/boinchome/slots/1/log.45743349._053045.job
[2025-07-27 20:12:57] 2025-07-28 00:12:18,033 | INFO     | adding to output.list: log.45743349._053045.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bd/4d/log.45743349._053045.job.log.tg
[2025-07-27 20:12:57] 2025-07-28 00:12:18,033 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 20:12:57] 2025-07-28 00:12:18,033 | INFO     | summary of transferred files:
[2025-07-27 20:12:57] 2025-07-28 00:12:18,033 | INFO     |  -- lfn=log.45743349._053045.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 20:12:57] 2025-07-28 00:12:18,034 | INFO     | stage-out finished correctly
[2025-07-27 20:12:57] 2025-07-28 00:12:18,958 | INFO     | monitor loop #373: job 0:6747577530 is in state 'finished'
[2025-07-27 20:12:57] 2025-07-28 00:12:18,958 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:12:57] 2025-07-28 00:12:19,114 | INFO     | PID=858038 has CPU usage=9.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 20:12:57] 2025-07-28 00:12:19,114 | INFO     | .. there are 10 such processes running
[2025-07-27 20:12:57] 2025-07-28 00:12:19,452 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 20:12:57] 2025-07-28 00:12:20,061 | INFO     | job 6747577530 has state=finished
[2025-07-27 20:12:57] 2025-07-28 00:12:20,062 | INFO     | preparing for final server update for job 6747577530 in state='finished'
[2025-07-27 20:12:57] 2025-07-28 00:12:20,062 | INFO     | this job has now completed (state=finished)
[2025-07-27 20:12:57] 2025-07-28 00:12:20,062 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 20:12:57] 2025-07-28 00:12:20,062 | INFO     | log transfer has been attempted: DONE
[2025-07-27 20:12:57] 2025-07-28 00:12:20,062 | INFO     | job 6747577530 has finished - writing final server update
[2025-07-27 20:12:57] 2025-07-28 00:12:20,063 | INFO     | total number of processed events: 400 (read)
[2025-07-27 20:12:57] 2025-07-28 00:12:20,064 | INFO     | executing command: lscpu
[2025-07-27 20:12:57] 2025-07-28 00:12:20,125 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 20:12:57] 2025-07-28 00:12:21,461 | INFO     | monitor loop #374: job 0:6747577530 is in state 'finished'
[2025-07-27 20:12:57] 2025-07-28 00:12:21,461 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:12:57] 2025-07-28 00:12:23,964 | INFO     | monitor loop #375: job 0:6747577530 is in state 'finished'
[2025-07-27 20:12:57] 2025-07-28 00:12:23,964 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:12:57] 2025-07-28 00:12:25,259 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 20:12:57] 2025-07-28 00:12:25,264 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3231.909124999999
[2025-07-27 20:12:57] 2025-07-28 00:12:25,274 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6747577530/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 20:12:57] 2025-07-28 00:12:25,274 | INFO     | extracted standard info from prmon json
[2025-07-27 20:12:57] 2025-07-28 00:12:25,274 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 20:12:57] 2025-07-28 00:12:25,275 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 20:12:57] 2025-07-28 00:12:25,275 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 20:12:57] 2025-07-28 00:12:25,275 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 20:12:57] 2025-07-28 00:12:25,277 | INFO     | fitting pss+swap vs Time
[2025-07-27 20:12:57] 2025-07-28 00:12:25,277 | INFO     | sum of square deviations: 130793150.0
[2025-07-27 20:12:57] 2025-07-28 00:12:25,277 | INFO     | sum of deviations: -12556573364.999998
[2025-07-27 20:12:57] 2025-07-28 00:12:25,277 | INFO     | mean x: 1753659132.0
[2025-07-27 20:12:57] 2025-07-28 00:12:25,277 | INFO     | mean y: 2295227.7466666666
[2025-07-27 20:12:57] 2025-07-28 00:12:25,277 | INFO     | -- intersect: 168359350227.647
[2025-07-27 20:12:57] 2025-07-28 00:12:25,277 | INFO     | intersect: 168359350227.647
[2025-07-27 20:12:57] 2025-07-28 00:12:25,278 | INFO     | chi2: 0.18950838758019806
[2025-07-27 20:12:57] 2025-07-28 00:12:25,278 | INFO     | -- intersect: 168359350227.647
[2025-07-27 20:12:57] 2025-07-28 00:12:25,278 | INFO     | current memory leak: -96.00 B/s (using 75 data points, chi2=0.19)
[2025-07-27 20:12:57] 2025-07-28 00:12:25,278 | INFO     | could have reported an average CPU frequency of 3226 MHz (6 samples)
[2025-07-27 20:12:57] 2025-07-28 00:12:25,278 | INFO     | ..............................
[2025-07-27 20:12:57] 2025-07-28 00:12:25,278 | INFO     | . Timing measurements:
[2025-07-27 20:12:57] 2025-07-28 00:12:25,278 | INFO     | . get job = 0 s
[2025-07-27 20:12:57] 2025-07-28 00:12:25,278 | INFO     | . initial setup = 3 s
[2025-07-27 20:12:57] 2025-07-28 00:12:25,278 | INFO     | . payload setup = 7 s
[2025-07-27 20:12:57] 2025-07-28 00:12:25,278 | INFO     | . stage-in = 0 s
[2025-07-27 20:12:57] 2025-07-28 00:12:25,279 | INFO     | . payload execution = 4968 s
[2025-07-27 20:12:57] 2025-07-28 00:12:25,279 | INFO     | . stage-out = 0 s
[2025-07-27 20:12:57] 2025-07-28 00:12:25,279 | INFO     | . log creation = 0 s
[2025-07-27 20:12:57] 2025-07-28 00:12:25,279 | INFO     | ..............................
[2025-07-27 20:12:57] 2025-07-28 00:12:25,363 | INFO     | 
[2025-07-27 20:12:57] 2025-07-28 00:12:25,363 | INFO     | job summary report
[2025-07-27 20:12:57] 2025-07-28 00:12:25,364 | INFO     | --------------------------------------------------
[2025-07-27 20:12:57] 2025-07-28 00:12:25,364 | INFO     | PanDA job id: 6747577530
[2025-07-27 20:12:57] 2025-07-28 00:12:25,364 | INFO     | task id: 45743349
[2025-07-27 20:12:57] 2025-07-28 00:12:25,364 | INFO     | errors: (none)
[2025-07-27 20:12:57] 2025-07-28 00:12:25,364 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 20:12:57] 2025-07-28 00:12:25,364 | INFO     | pilot state: finished 
[2025-07-27 20:12:57] 2025-07-28 00:12:25,364 | INFO     | transexitcode: 0
[2025-07-27 20:12:57] 2025-07-28 00:12:25,364 | INFO     | exeerrorcode: 0
[2025-07-27 20:12:57] 2025-07-28 00:12:25,364 | INFO     | exeerrordiag: 
[2025-07-27 20:12:57] 2025-07-28 00:12:25,364 | INFO     | exitcode: 0
[2025-07-27 20:12:57] 2025-07-28 00:12:25,364 | INFO     | exitmsg: OK
[2025-07-27 20:12:57] 2025-07-28 00:12:25,364 | INFO     | cpuconsumptiontime: 36249 s
[2025-07-27 20:12:57] 2025-07-28 00:12:25,364 | INFO     | nevents: 400
[2025-07-27 20:12:57] 2025-07-28 00:12:25,365 | INFO     | neventsw: 0
[2025-07-27 20:12:57] 2025-07-28 00:12:25,365 | INFO     | pid: 864534
[2025-07-27 20:12:57] 2025-07-28 00:12:25,365 | INFO     | pgrp: 864534
[2025-07-27 20:12:57] 2025-07-28 00:12:25,365 | INFO     | corecount: 8
[2025-07-27 20:12:57] 2025-07-28 00:12:25,365 | INFO     | event service: False
[2025-07-27 20:12:57] 2025-07-28 00:12:25,365 | INFO     | sizes: {0: 2397475, 5: 2397737, 11: 2397793, 4979: 2424208, 4981: 2433206, 4982: 2433262, 4988: 2433584}
[2025-07-27 20:12:57] 2025-07-28 00:12:25,365 | INFO     | --------------------------------------------------
[2025-07-27 20:12:57] 2025-07-28 00:12:25,365 | INFO     | 
[2025-07-27 20:12:57] 2025-07-28 00:12:25,365 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-27 20:12:57] 2025-07-28 00:12:25,391 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 20:12:57] 2025-07-28 00:12:25,391 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 20:12:57] 2025-07-28 00:12:25,391 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 20:12:57] 2025-07-28 00:12:25,391 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 20:12:57] 2025-07-28 00:12:25,391 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 20:12:57] 2025-07-28 00:12:25,391 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 20:12:57] 2025-07-28 00:12:25,391 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 20:12:57] 2025-07-28 00:12:25,391 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 20:12:57] 2025-07-28 00:12:25,391 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 20:12:57] 2025-07-28 00:12:25,392 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 20:12:57] 2025-07-28 00:12:25,392 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 20:12:57] 2025-07-28 00:12:25,392 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 20:12:57] 2025-07-28 00:12:25,392 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 20:12:57] 2025-07-28 00:12:25,392 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 20:12:57] 2025-07-28 00:12:25,392 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 20:12:57] 2025-07-28 00:12:25,392 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 20:12:57] 2025-07-28 00:12:25,392 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 20:12:57] 2025-07-28 00:12:25,392 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 20:12:57] 2025-07-28 00:12:25,392 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 20:12:57] 2025-07-28 00:12:25,392 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 20:12:57] 2025-07-28 00:12:25,392 | INFO     | job 6747577530 has completed (purged errors)
[2025-07-27 20:12:57] 2025-07-28 00:12:25,393 | INFO     | overall cleanup function is called
[2025-07-27 20:12:57] 2025-07-28 00:12:26,399 | INFO     | --- collectZombieJob: --- 10, [864534]
[2025-07-27 20:12:57] 2025-07-28 00:12:26,399 | INFO     | zombie collector waiting for pid 864534
[2025-07-27 20:12:57] 2025-07-28 00:12:26,399 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 20:12:57] 2025-07-28 00:12:26,399 | INFO     | collected zombie processes
[2025-07-27 20:12:57] 2025-07-28 00:12:26,399 | INFO     | will attempt to kill all subprocesses of pid=864534
[2025-07-27 20:12:57] 2025-07-28 00:12:26,644 | INFO     | process IDs to be killed: [864534] (in reverse order)
[2025-07-27 20:12:57] 2025-07-28 00:12:26,729 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 20:12:57] 2025-07-28 00:12:26,730 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 20:12:57] 2025-07-28 00:12:26,741 | INFO     | did not find any defunct processes belonging to 864534
[2025-07-27 20:12:57] 2025-07-28 00:12:26,752 | INFO     | did not find any defunct processes belonging to 864534
[2025-07-27 20:12:57] 2025-07-28 00:12:26,752 | INFO     | ready for new job
[2025-07-27 20:12:57] 2025-07-28 00:12:26,753 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 20:12:57] 2025-07-28 00:12:26,754 | INFO     | ***************************************
[2025-07-27 20:12:57] 2025-07-28 00:12:26,755 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 20:12:57] 2025-07-28 00:12:26,755 | INFO     | ***************************************
[2025-07-27 20:12:57] 2025-07-28 00:12:26,755 | INFO     | 
[2025-07-27 20:12:57] 2025-07-28 00:12:26,772 | INFO     | architecture information:
[2025-07-27 20:12:57] 2025-07-28 00:12:26,772 | INFO     | executing command: cat /etc/os-release
[2025-07-27 20:12:57] 2025-07-28 00:12:26,790 | INFO     | cat /etc/os-release:
[2025-07-27 20:12:57] NAME="CentOS Linux"
[2025-07-27 20:12:57] VERSION="7 (Core)"
[2025-07-27 20:12:57] ID="centos"
[2025-07-27 20:12:57] ID_LIKE="rhel fedora"
[2025-07-27 20:12:57] VERSION_ID="7"
[2025-07-27 20:12:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 20:12:57] ANSI_COLOR="0;31"
[2025-07-27 20:12:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 20:12:57] HOME_URL="https://www.centos.org/"
[2025-07-27 20:12:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 20:12:57] 
[2025-07-27 20:12:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 20:12:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 20:12:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 20:12:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 20:12:57] 
[2025-07-27 20:12:57] 2025-07-28 00:12:26,792 | INFO     | ***************************************
[2025-07-27 20:12:57] 2025-07-28 00:12:27,294 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-27 20:12:57] 2025-07-28 00:12:27,309 | INFO     | sufficient remaining disk space (86325067776 B)
[2025-07-27 20:12:57] 2025-07-28 00:12:27,309 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 20:12:57] 2025-07-28 00:12:27,309 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 20:12:57] 2025-07-28 00:12:27,309 | INFO     | update_server=False
[2025-07-27 20:12:57] 2025-07-28 00:12:27,309 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 20:12:57] 2025-07-28 00:12:27,309 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 20:12:57] 2025-07-28 00:12:27,473 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 20:12:57] 2025-07-28 00:12:27,475 | INFO     | aborting loop
[2025-07-27 20:12:57] 2025-07-28 00:12:27,894 | INFO     | all data control threads have been joined
[2025-07-27 20:12:57] 2025-07-28 00:12:28,161 | INFO     | all payload control threads have been joined
[2025-07-27 20:12:57] 2025-07-28 00:12:28,314 | INFO     | [job] retrieve thread has finished
[2025-07-27 20:12:57] 2025-07-28 00:12:28,315 | INFO     | [job] queue monitor thread has finished
[2025-07-27 20:12:57] 2025-07-28 00:12:28,457 | INFO     | [data] copytool_in thread has finished
[2025-07-27 20:12:57] 2025-07-28 00:12:28,480 | INFO     | [job] job monitor thread has finished
[2025-07-27 20:12:57] 2025-07-28 00:12:28,615 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 20:12:57] 2025-07-28 00:12:28,663 | INFO     | all job control threads have been joined
[2025-07-27 20:12:57] 2025-07-28 00:12:28,664 | INFO     | [payload] validate_post thread has finished
[2025-07-27 20:12:57] 2025-07-28 00:12:28,900 | INFO     | [data] control thread has finished
[2025-07-27 20:12:57] 2025-07-28 00:12:29,163 | INFO     | [payload] control thread has finished
[2025-07-27 20:12:57] 2025-07-28 00:12:29,296 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 20:12:57] 2025-07-28 00:12:29,424 | INFO     | [payload] failed_post thread has finished
[2025-07-27 20:12:57] 2025-07-28 00:12:29,512 | INFO     | [job] validate thread has finished
[2025-07-27 20:12:57] 2025-07-28 00:12:29,669 | INFO     | [job] control thread has finished
[2025-07-27 20:12:57] 2025-07-28 00:12:29,782 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 20:12:57] 2025-07-28 00:12:29,791 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 20:12:57] 2025-07-28 00:12:30,035 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 20:12:57] 2025-07-28 00:12:30,620 | INFO     | [data] copytool_out thread has finished
[2025-07-27 20:12:57] 2025-07-28 00:12:34,043 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 20:12:57] 2025-07-28 00:12:37,441 | INFO     | job.realtimelogging is not enabled
[2025-07-27 20:12:57] 2025-07-28 00:12:38,447 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 20:12:57] 2025-07-28 00:12:39,985 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139912459327296)>', '<ExcThread(monitor, started 139911847999232)>']
[2025-07-27 20:12:57] 2025-07-28 00:12:44,992 | INFO     | all workflow threads have been joined
[2025-07-27 20:12:57] 2025-07-28 00:12:44,993 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 20:12:57] 2025-07-28 00:12:44,993 | INFO     | traces error code: 0
[2025-07-27 20:12:57] 2025-07-28 00:12:44,993 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 20:12:57] 2025-07-28 00:12:57,504 | INFO     | PID=858038 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 20:12:57] 2025-07-28 00:12:57,505 | INFO     | .. there are 10 such processes running
[2025-07-27 20:12:57] 2025-07-28 00:12:57,505 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 20:12:57] 2025-07-28 00:12:57,505 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 20:12:57] 2025-07-28 00:12:57,505 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 20:12:57] 2025-07-28 00:12:57,505 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 20:12:57] 2025-07-28 00:12:57,505 | INFO     | [monitor] control thread has ended
[2025-07-27 20:12:57] 2025-07-28 00:12:57,611 [wrapper] ==== pilot stdout END ====
[2025-07-27 20:12:57] 2025-07-28 00:12:57,614 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 20:12:57] 2025-07-28 00:12:57,617 [wrapper] pilotpid: 858038
[2025-07-27 20:12:57] 2025-07-28 00:12:57,622 [wrapper] Pilot exit status: 0
[2025-07-27 20:12:57] 2025-07-28 00:12:57,639 [wrapper] pandaids: 6747577530
[2025-07-27 20:12:57] 2025-07-28 00:12:57,705 [wrapper] cleanup supervisor_pilot  956698 858039
[2025-07-27 20:12:57] 2025-07-28 00:12:57,709 [wrapper] Test setup, not cleaning
[2025-07-27 20:12:57] 2025-07-28 00:12:57,711 [wrapper] apfmon messages muted
[2025-07-27 20:12:57] 2025-07-28 00:12:57,714 [wrapper] ==== wrapper stdout END ====
[2025-07-27 20:12:57] 2025-07-28 00:12:57,719 [wrapper] ==== wrapper stderr END ====
[2025-07-27 20:12:57]  *** Error codes and diagnostics ***
[2025-07-27 20:12:57]     "exeErrorCode": 0,
[2025-07-27 20:12:57]     "exeErrorDiag": "",
[2025-07-27 20:12:57]     "pilotErrorCode": 0,
[2025-07-27 20:12:57]     "pilotErrorDiag": "",
[2025-07-27 20:12:57]  *** Listing of results directory ***
[2025-07-27 20:12:57] total 349916
[2025-07-27 20:12:57] -rwx------. 1 boincer umatlas     36292 Jul 27 13:39 runpilot2-wrapper.sh
[2025-07-27 20:12:57] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 13:39 pilot3.tar.gz
[2025-07-27 20:12:57] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 13:39 queuedata.json
[2025-07-27 20:12:57] -rw-r--r--. 1 boincer umatlas       100 Jul 27 18:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 20:12:57] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 18:48 run_atlas
[2025-07-27 20:12:57] -rw-r--r--. 1 boincer umatlas       105 Jul 27 18:48 job.xml
[2025-07-27 20:12:57] -rw-r--r--. 2 boincer umatlas 143291521 Jul 27 18:48 EVNT.45743347._002892.pool.root.1
[2025-07-27 20:12:57] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 18:48 start_atlas.sh
[2025-07-27 20:12:57] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 18:48 shared
[2025-07-27 20:12:57] -rw-r--r--. 2 boincer umatlas    542892 Jul 27 18:48 input.tar.gz
[2025-07-27 20:12:57] -rw-r--r--. 1 boincer umatlas         0 Jul 27 18:48 boinc_lockfile
[2025-07-27 20:12:57] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 18:48 pandaJob.out
[2025-07-27 20:12:57] -rw-------. 1 boincer umatlas    980109 Jul 27 18:48 agis_schedconf.cvmfs.json
[2025-07-27 20:12:57] -rw-------. 1 boincer umatlas   1593052 Jul 27 18:49 agis_ddmendpoints.agis.ALL.json
[2025-07-27 20:12:57] drwx------. 4 boincer umatlas      4096 Jul 27 18:49 pilot3
[2025-07-27 20:12:57] -rw-r--r--. 1 boincer umatlas      6897 Jul 27 20:10 init_data.xml
[2025-07-27 20:12:57] -rw-r--r--. 1 boincer umatlas       529 Jul 27 20:11 boinc_task_state.xml
[2025-07-27 20:12:57] -rw-------. 1 boincer umatlas 209555319 Jul 27 20:11 HITS.45743349._053045.pool.root.1
[2025-07-27 20:12:57] -rw-------. 1 boincer umatlas      1023 Jul 27 20:12 memory_monitor_summary.json
[2025-07-27 20:12:57] -rw-------. 1 boincer umatlas    302848 Jul 27 20:12 log.45743349._053045.job.log.tgz.1
[2025-07-27 20:12:57] -rw-------. 1 boincer umatlas      7767 Jul 27 20:12 heartbeat.json
[2025-07-27 20:12:57] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 20:12 boinc_mmap_file
[2025-07-27 20:12:57] -rw-r--r--. 1 boincer umatlas        27 Jul 27 20:12 wrapper_checkpoint.txt
[2025-07-27 20:12:57] -rw-------. 1 boincer umatlas       822 Jul 27 20:12 pilotlog.txt
[2025-07-27 20:12:57] -rw-------. 1 boincer umatlas        95 Jul 27 20:12 pilot_heartbeat.json
[2025-07-27 20:12:57] -rw-------. 1 boincer umatlas    492354 Jul 27 20:12 log.45743349._053045.job.log.1
[2025-07-27 20:12:57] -rw-------. 1 boincer umatlas       357 Jul 27 20:12 output.list
[2025-07-27 20:12:57] -rw-r--r--. 1 boincer umatlas       620 Jul 27 20:12 runtime_log
[2025-07-27 20:12:57] -rw-------. 1 boincer umatlas    819200 Jul 27 20:12 result.tar.gz
[2025-07-27 20:12:57] -rw-------. 1 boincer umatlas       652 Jul 27 20:12 sDCNDmpWK07n9Rq4apOajLDm4fhM0noT9bVof3QYDmnq2KDmWfaLcm.diag
[2025-07-27 20:12:57] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 20:12 runtime_log.err
[2025-07-27 20:12:57] -rw-r--r--. 1 boincer umatlas     21863 Jul 27 20:12 stderr.txt
[2025-07-27 20:12:57] HITS file was successfully produced:
[2025-07-27 20:12:57] -rw-------. 1 boincer umatlas 209555319 Jul 27 20:11 shared/HITS.pool.root.1
[2025-07-27 20:12:57]  *** Contents of shared directory: ***
[2025-07-27 20:12:57] total 345932
[2025-07-27 20:12:57] -rw-r--r--. 2 boincer umatlas 143291521 Jul 27 18:48 ATLAS.root_0
[2025-07-27 20:12:57] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 18:48 start_atlas.sh
[2025-07-27 20:12:57] -rw-r--r--. 2 boincer umatlas    542892 Jul 27 18:48 input.tar.gz
[2025-07-27 20:12:57] -rw-------. 1 boincer umatlas 209555319 Jul 27 20:11 HITS.pool.root.1
[2025-07-27 20:12:57] -rw-------. 1 boincer umatlas    819200 Jul 27 20:12 result.tar.gz
20:12:59 (854463): run_atlas exited; CPU time 36261.115592
20:12:59 (854463): called boinc_finish(0)

</stderr_txt>
]]>

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