Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:47:43 (3969291): wrapper (7.7.26015): starting
18:47:43 (3969291): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 18:47:43] Arguments: --nthreads 8
[2025-07-27 18:47:43] Threads: 8
[2025-07-27 18:47:43] Checking for CVMFS
[2025-07-27 18:47:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 18:47:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 18:47:44] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 18:47:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 18:47:44] 2.13.1.0 644958 14801 173844 148827 0 274 24052437 40960001 13797 16776704 0 39042722 99.873 29107412 46756 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 18:47:44] CVMFS is ok
[2025-07-27 18:47:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 18:47:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 18:47:44] Further information can be found at the LHC@home message board.
[2025-07-27 18:47:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 18:47:44] Checking for apptainer binary...
[2025-07-27 18:47:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 18:47:44] Running /usr/bin/apptainer --version
[2025-07-27 18:47:44] apptainer version 1.4.1-1.el9
[2025-07-27 18:47:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 18:47:44] c-212-9.aglt2.org
[2025-07-27 18:47:44] apptainer works
[2025-07-27 18:47:44] Set ATHENA_PROC_NUMBER=8
[2025-07-27 18:47:44] Set ATHENA_CORE_NUMBER=8
[2025-07-27 18:47:44] Starting ATLAS job with PandaID=6747577480
[2025-07-27 18:47:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 20:17:33]  *** The last 200 lines of the pilot log: ***
[2025-07-27 20:17:33]  lfn=log.45743349._052995.job.log.tgz.1
[2025-07-27 20:17:33]  mtime=0
[2025-07-27 20:17:33]  protocol_id=None
[2025-07-27 20:17:33]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 20:17:33]  replicas=None
[2025-07-27 20:17:33]  scope=mc23_13p6TeV
[2025-07-27 20:17:33]  status=None
[2025-07-27 20:17:33]  status_code=0
[2025-07-27 20:17:33]  storage_token=
[2025-07-27 20:17:33]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747577480/log.45743349._052995.job.log.tgz.1
[2025-07-27 20:17:33]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2e/6b/log.45743349._052995.job.log.tgz.1
[2025-07-27 20:17:33]  workdir=None
[2025-07-27 20:17:33] ]
[2025-07-27 20:17:33] 2025-07-28 00:16:56,164 | INFO     | transferring file log.45743349._052995.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747577480/log.45743349._052995.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 20:17:33] 2025-07-28 00:16:56,164 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747577480/log.45743349._052995.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._052995.job
[2025-07-27 20:17:33] 2025-07-28 00:16:56,183 | INFO     | adding to output.list: log.45743349._052995.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2e/6b/log.45743349._052995.job.log.tg
[2025-07-27 20:17:33] 2025-07-28 00:16:56,184 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 20:17:33] 2025-07-28 00:16:56,184 | INFO     | summary of transferred files:
[2025-07-27 20:17:33] 2025-07-28 00:16:56,184 | INFO     |  -- lfn=log.45743349._052995.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 20:17:33] 2025-07-28 00:16:56,185 | INFO     | stage-out finished correctly
[2025-07-27 20:17:33] 2025-07-28 00:16:56,256 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 20:17:33] 2025-07-28 00:16:56,316 | INFO     | job 6747577480 has state=finished
[2025-07-27 20:17:33] 2025-07-28 00:16:56,316 | INFO     | preparing for final server update for job 6747577480 in state='finished'
[2025-07-27 20:17:33] 2025-07-28 00:16:56,371 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-27 20:17:33] 2025-07-28 00:16:56,371 | INFO     | this job has now completed (state=finished)
[2025-07-27 20:17:33] 2025-07-28 00:16:56,371 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 20:17:33] 2025-07-28 00:16:56,372 | INFO     | log transfer has been attempted: DONE
[2025-07-27 20:17:33] 2025-07-28 00:16:56,372 | INFO     | job 6747577480 has finished - writing final server update
[2025-07-27 20:17:33] 2025-07-28 00:16:56,372 | INFO     | total number of processed events: 400 (read)
[2025-07-27 20:17:33] 2025-07-28 00:16:56,372 | INFO     | executing command: lscpu
[2025-07-27 20:17:33] 2025-07-28 00:16:56,427 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 20:17:33] 2025-07-28 00:16:57,279 | INFO     | PID=3972972 has CPU usage=11.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-27 20:17:33] 2025-07-28 00:16:57,280 | INFO     | .. there are 14 such processes running
[2025-07-27 20:17:33] 2025-07-28 00:16:57,432 | INFO     | monitor loop #393: job 0:6747577480 is in state 'finished'
[2025-07-27 20:17:33] 2025-07-28 00:16:57,432 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:17:33] 2025-07-28 00:16:59,937 | INFO     | monitor loop #394: job 0:6747577480 is in state 'finished'
[2025-07-27 20:17:33] 2025-07-28 00:16:59,937 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:17:33] 2025-07-28 00:17:00,823 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 20:17:33] 2025-07-28 00:17:00,828 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3169.4885104166665
[2025-07-27 20:17:33] 2025-07-28 00:17:00,839 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747577480/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 20:17:33] 2025-07-28 00:17:00,840 | INFO     | extracted standard info from prmon json
[2025-07-27 20:17:33] 2025-07-28 00:17:00,840 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 20:17:33] 2025-07-28 00:17:00,840 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 20:17:33] 2025-07-28 00:17:00,840 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 20:17:33] 2025-07-28 00:17:00,840 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 20:17:33] 2025-07-28 00:17:00,841 | INFO     | fitting pss+swap vs Time
[2025-07-27 20:17:33] 2025-07-28 00:17:00,842 | INFO     | sum of square deviations: 158737860.0
[2025-07-27 20:17:33] 2025-07-28 00:17:00,842 | INFO     | sum of deviations: -4947183143.0
[2025-07-27 20:17:33] 2025-07-28 00:17:00,842 | INFO     | mean x: 1753659239.5
[2025-07-27 20:17:33] 2025-07-28 00:17:00,842 | INFO     | mean y: 2552623.525
[2025-07-27 20:17:33] 2025-07-28 00:17:00,842 | INFO     | -- intersect: 54656643514.13295
[2025-07-27 20:17:33] 2025-07-28 00:17:00,842 | INFO     | intersect: 54656643514.13295
[2025-07-27 20:17:33] 2025-07-28 00:17:00,842 | INFO     | chi2: 0.01922669495989761
[2025-07-27 20:17:33] 2025-07-28 00:17:00,842 | INFO     | -- intersect: 54656643514.13295
[2025-07-27 20:17:33] 2025-07-28 00:17:00,842 | INFO     | current memory leak: -31.17 B/s (using 80 data points, chi2=0.02)
[2025-07-27 20:17:33] 2025-07-28 00:17:00,842 | INFO     | could have reported an average CPU frequency of 3027 MHz (6 samples)
[2025-07-27 20:17:33] 2025-07-28 00:17:00,843 | INFO     | ..............................
[2025-07-27 20:17:33] 2025-07-28 00:17:00,843 | INFO     | . Timing measurements:
[2025-07-27 20:17:33] 2025-07-28 00:17:00,843 | INFO     | . get job = 0 s
[2025-07-27 20:17:33] 2025-07-28 00:17:00,843 | INFO     | . initial setup = 3 s
[2025-07-27 20:17:33] 2025-07-28 00:17:00,843 | INFO     | . payload setup = 14 s
[2025-07-27 20:17:33] 2025-07-28 00:17:00,843 | INFO     | . stage-in = 0 s
[2025-07-27 20:17:33] 2025-07-28 00:17:00,843 | INFO     | . payload execution = 5294 s
[2025-07-27 20:17:33] 2025-07-28 00:17:00,843 | INFO     | . stage-out = 0 s
[2025-07-27 20:17:33] 2025-07-28 00:17:00,843 | INFO     | . log creation = 0 s
[2025-07-27 20:17:33] 2025-07-28 00:17:00,843 | INFO     | ..............................
[2025-07-27 20:17:33] 2025-07-28 00:17:00,904 | INFO     | 
[2025-07-27 20:17:33] 2025-07-28 00:17:00,905 | INFO     | job summary report
[2025-07-27 20:17:33] 2025-07-28 00:17:00,905 | INFO     | --------------------------------------------------
[2025-07-27 20:17:33] 2025-07-28 00:17:00,905 | INFO     | PanDA job id: 6747577480
[2025-07-27 20:17:33] 2025-07-28 00:17:00,905 | INFO     | task id: 45743349
[2025-07-27 20:17:33] 2025-07-28 00:17:00,905 | INFO     | errors: (none)
[2025-07-27 20:17:33] 2025-07-28 00:17:00,905 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 20:17:33] 2025-07-28 00:17:00,905 | INFO     | pilot state: finished 
[2025-07-27 20:17:33] 2025-07-28 00:17:00,905 | INFO     | transexitcode: 0
[2025-07-27 20:17:33] 2025-07-28 00:17:00,905 | INFO     | exeerrorcode: 0
[2025-07-27 20:17:33] 2025-07-28 00:17:00,905 | INFO     | exeerrordiag: 
[2025-07-27 20:17:33] 2025-07-28 00:17:00,905 | INFO     | exitcode: 0
[2025-07-27 20:17:33] 2025-07-28 00:17:00,905 | INFO     | exitmsg: OK
[2025-07-27 20:17:33] 2025-07-28 00:17:00,905 | INFO     | cpuconsumptiontime: 38802 s
[2025-07-27 20:17:33] 2025-07-28 00:17:00,905 | INFO     | nevents: 400
[2025-07-27 20:17:33] 2025-07-28 00:17:00,905 | INFO     | neventsw: 0
[2025-07-27 20:17:33] 2025-07-28 00:17:00,905 | INFO     | pid: 3980817
[2025-07-27 20:17:33] 2025-07-28 00:17:00,905 | INFO     | pgrp: 3980817
[2025-07-27 20:17:33] 2025-07-28 00:17:00,905 | INFO     | corecount: 8
[2025-07-27 20:17:33] 2025-07-28 00:17:00,906 | INFO     | event service: False
[2025-07-27 20:17:33] 2025-07-28 00:17:00,906 | INFO     | sizes: {0: 2396645, 1: 2397501, 9: 2397763, 12: 2397791, 5311: 2424215, 5312: 2424214, 5313: 2433452, 5318: 2433590}
[2025-07-27 20:17:33] 2025-07-28 00:17:00,906 | INFO     | --------------------------------------------------
[2025-07-27 20:17:33] 2025-07-28 00:17:00,906 | INFO     | 
[2025-07-27 20:17:33] 2025-07-28 00:17:00,906 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 20:17:33] 2025-07-28 00:17:00,930 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 20:17:33] 2025-07-28 00:17:00,932 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 20:17:33] 2025-07-28 00:17:00,932 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 20:17:33] 2025-07-28 00:17:00,932 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 20:17:33] 2025-07-28 00:17:00,932 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 20:17:33] 2025-07-28 00:17:00,932 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 20:17:33] 2025-07-28 00:17:00,932 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 20:17:33] 2025-07-28 00:17:00,932 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 20:17:33] 2025-07-28 00:17:00,932 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 20:17:33] 2025-07-28 00:17:00,932 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 20:17:33] 2025-07-28 00:17:00,932 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 20:17:33] 2025-07-28 00:17:00,932 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 20:17:33] 2025-07-28 00:17:00,932 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 20:17:33] 2025-07-28 00:17:00,932 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 20:17:33] 2025-07-28 00:17:00,932 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 20:17:33] 2025-07-28 00:17:00,932 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 20:17:33] 2025-07-28 00:17:00,932 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 20:17:34] 2025-07-28 00:17:00,933 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 20:17:34] 2025-07-28 00:17:00,933 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 20:17:34] 2025-07-28 00:17:00,933 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 20:17:34] 2025-07-28 00:17:00,933 | INFO     | job 6747577480 has completed (purged errors)
[2025-07-27 20:17:34] 2025-07-28 00:17:00,933 | INFO     | overall cleanup function is called
[2025-07-27 20:17:34] 2025-07-28 00:17:01,940 | INFO     | --- collectZombieJob: --- 10, [3980817]
[2025-07-27 20:17:34] 2025-07-28 00:17:01,940 | INFO     | zombie collector waiting for pid 3980817
[2025-07-27 20:17:34] 2025-07-28 00:17:01,940 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 20:17:34] 2025-07-28 00:17:01,940 | INFO     | collected zombie processes
[2025-07-27 20:17:34] 2025-07-28 00:17:01,940 | INFO     | will attempt to kill all subprocesses of pid=3980817
[2025-07-27 20:17:34] 2025-07-28 00:17:02,227 | INFO     | process IDs to be killed: [3980817] (in reverse order)
[2025-07-27 20:17:34] 2025-07-28 00:17:02,337 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 20:17:34] 2025-07-28 00:17:02,337 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 20:17:34] 2025-07-28 00:17:02,350 | INFO     | did not find any defunct processes belonging to 3980817
[2025-07-27 20:17:34] 2025-07-28 00:17:02,363 | INFO     | did not find any defunct processes belonging to 3980817
[2025-07-27 20:17:34] 2025-07-28 00:17:02,364 | INFO     | ready for new job
[2025-07-27 20:17:34] 2025-07-28 00:17:02,364 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 20:17:34] 2025-07-28 00:17:02,365 | INFO     | ***************************************
[2025-07-27 20:17:34] 2025-07-28 00:17:02,365 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 20:17:34] 2025-07-28 00:17:02,366 | INFO     | ***************************************
[2025-07-27 20:17:34] 2025-07-28 00:17:02,366 | INFO     | 
[2025-07-27 20:17:34] 2025-07-28 00:17:02,371 | INFO     | architecture information:
[2025-07-27 20:17:34] 2025-07-28 00:17:02,371 | INFO     | executing command: cat /etc/os-release
[2025-07-27 20:17:34] 2025-07-28 00:17:02,389 | INFO     | cat /etc/os-release:
[2025-07-27 20:17:34] NAME="CentOS Linux"
[2025-07-27 20:17:34] VERSION="7 (Core)"
[2025-07-27 20:17:34] ID="centos"
[2025-07-27 20:17:34] ID_LIKE="rhel fedora"
[2025-07-27 20:17:34] VERSION_ID="7"
[2025-07-27 20:17:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 20:17:34] ANSI_COLOR="0;31"
[2025-07-27 20:17:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 20:17:34] HOME_URL="https://www.centos.org/"
[2025-07-27 20:17:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 20:17:34] 
[2025-07-27 20:17:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 20:17:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 20:17:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 20:17:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 20:17:34] 
[2025-07-27 20:17:34] 2025-07-28 00:17:02,389 | INFO     | ***************************************
[2025-07-27 20:17:34] 2025-07-28 00:17:02,892 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 20:17:34] 2025-07-28 00:17:02,909 | INFO     | sufficient remaining disk space (129011548160 B)
[2025-07-27 20:17:34] 2025-07-28 00:17:02,910 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 20:17:34] 2025-07-28 00:17:02,910 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 20:17:34] 2025-07-28 00:17:02,910 | INFO     | update_server=False
[2025-07-27 20:17:34] 2025-07-28 00:17:02,910 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 20:17:34] 2025-07-28 00:17:02,910 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 20:17:34] 2025-07-28 00:17:03,445 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 20:17:34] 2025-07-28 00:17:03,445 | INFO     | aborting loop
[2025-07-27 20:17:34] 2025-07-28 00:17:03,633 | INFO     | all payload control threads have been joined
[2025-07-27 20:17:34] 2025-07-28 00:17:03,915 | INFO     | [job] retrieve thread has finished
[2025-07-27 20:17:34] 2025-07-28 00:17:03,938 | INFO     | all job control threads have been joined
[2025-07-27 20:17:34] 2025-07-28 00:17:03,941 | INFO     | all data control threads have been joined
[2025-07-27 20:17:34] 2025-07-28 00:17:03,987 | INFO     | [payload] validate_post thread has finished
[2025-07-27 20:17:34] 2025-07-28 00:17:04,223 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 20:17:34] 2025-07-28 00:17:04,266 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 20:17:34] 2025-07-28 00:17:04,363 | INFO     | [data] copytool_in thread has finished
[2025-07-27 20:17:34] 2025-07-28 00:17:04,450 | INFO     | [job] job monitor thread has finished
[2025-07-27 20:17:34] 2025-07-28 00:17:04,608 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 20:17:34] 2025-07-28 00:17:04,639 | INFO     | [payload] control thread has finished
[2025-07-27 20:17:34] 2025-07-28 00:17:04,759 | INFO     | [job] validate thread has finished
[2025-07-27 20:17:34] 2025-07-28 00:17:04,939 | INFO     | [job] control thread has finished
[2025-07-27 20:17:34] 2025-07-28 00:17:04,946 | INFO     | [data] control thread has finished
[2025-07-27 20:17:34] 2025-07-28 00:17:04,949 | INFO     | [payload] failed_post thread has finished
[2025-07-27 20:17:34] 2025-07-28 00:17:04,986 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 20:17:34] 2025-07-28 00:17:05,194 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 20:17:34] 2025-07-28 00:17:05,915 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 20:17:34] 2025-07-28 00:17:06,271 | INFO     | [data] copytool_out thread has finished
[2025-07-27 20:17:34] 2025-07-28 00:17:06,913 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 20:17:34] 2025-07-28 00:17:06,920 | INFO     | [job] queue monitor thread has finished
[2025-07-27 20:17:34] 2025-07-28 00:17:07,536 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139758269187904)>', '<ExcThread(monitor, started 139757564720896)>']
[2025-07-27 20:17:34] 2025-07-28 00:17:12,561 | INFO     | all workflow threads have been joined
[2025-07-27 20:17:34] 2025-07-28 00:17:12,561 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 20:17:34] 2025-07-28 00:17:12,561 | INFO     | traces error code: 0
[2025-07-27 20:17:34] 2025-07-28 00:17:12,561 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 20:17:34] 2025-07-28 00:17:33,726 | INFO     | PID=3972972 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 20:17:34] 2025-07-28 00:17:33,726 | INFO     | .. there are 14 such processes running
[2025-07-27 20:17:34] 2025-07-28 00:17:33,726 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 20:17:34] 2025-07-28 00:17:33,726 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 20:17:34] 2025-07-28 00:17:33,726 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 20:17:34] 2025-07-28 00:17:33,727 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 20:17:34] 2025-07-28 00:17:33,727 | INFO     | [monitor] control thread has ended
[2025-07-27 20:17:34] 2025-07-28 00:17:33,812 [wrapper] ==== pilot stdout END ====
[2025-07-27 20:17:34] 2025-07-28 00:17:33,816 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 20:17:34] 2025-07-28 00:17:33,819 [wrapper] pilotpid: 3972972
[2025-07-27 20:17:34] 2025-07-28 00:17:33,823 [wrapper] Pilot exit status: 0
[2025-07-27 20:17:34] 2025-07-28 00:17:33,835 [wrapper] pandaids: 6747577480
[2025-07-27 20:17:34] 2025-07-28 00:17:33,914 [wrapper] cleanup supervisor_pilot 4111398 3972973
[2025-07-27 20:17:34] 2025-07-28 00:17:33,918 [wrapper] Test setup, not cleaning
[2025-07-27 20:17:34] 2025-07-28 00:17:33,921 [wrapper] apfmon messages muted
[2025-07-27 20:17:34] 2025-07-28 00:17:33,923 [wrapper] ==== wrapper stdout END ====
[2025-07-27 20:17:34] 2025-07-28 00:17:33,926 [wrapper] ==== wrapper stderr END ====
[2025-07-27 20:17:34]  *** Error codes and diagnostics ***
[2025-07-27 20:17:34]     "exeErrorCode": 0,
[2025-07-27 20:17:34]     "exeErrorDiag": "",
[2025-07-27 20:17:34]     "pilotErrorCode": 0,
[2025-07-27 20:17:34]     "pilotErrorDiag": "",
[2025-07-27 20:17:34]  *** Listing of results directory ***
[2025-07-27 20:17:34] total 350036
[2025-07-27 20:17:34] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 13:29 pilot3.tar.gz
[2025-07-27 20:17:34] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 13:34 queuedata.json
[2025-07-27 20:17:34] -rwx------. 1 boincer umatlas     36292 Jul 27 13:34 runpilot2-wrapper.sh
[2025-07-27 20:17:34] -rw-r--r--. 1 boincer umatlas       100 Jul 27 18:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 20:17:34] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 18:47 run_atlas
[2025-07-27 20:17:34] -rw-r--r--. 1 boincer umatlas       105 Jul 27 18:47 job.xml
[2025-07-27 20:17:34] -rw-r--r--. 2 boincer umatlas 149598272 Jul 27 18:47 EVNT.45743347._002887.pool.root.1
[2025-07-27 20:17:34] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 18:47 start_atlas.sh
[2025-07-27 20:17:34] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 18:47 shared
[2025-07-27 20:17:34] -rw-r--r--. 2 boincer umatlas    542892 Jul 27 18:47 input.tar.gz
[2025-07-27 20:17:34] -rw-r--r--. 1 boincer umatlas         0 Jul 27 18:47 boinc_lockfile
[2025-07-27 20:17:34] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 18:47 pandaJob.out
[2025-07-27 20:17:34] -rw-------. 1 boincer umatlas    980109 Jul 27 18:48 agis_schedconf.cvmfs.json
[2025-07-27 20:17:34] -rw-------. 1 boincer umatlas   1593052 Jul 27 18:48 agis_ddmendpoints.agis.ALL.json
[2025-07-27 20:17:34] drwx------. 4 boincer umatlas      4096 Jul 27 18:48 pilot3
[2025-07-27 20:17:34] -rw-r--r--. 1 boincer umatlas      6943 Jul 27 20:13 init_data.xml
[2025-07-27 20:17:34] -rw-------. 1 boincer umatlas 203324879 Jul 27 20:16 HITS.45743349._052995.pool.root.1
[2025-07-27 20:17:34] -rw-r--r--. 1 boincer umatlas       529 Jul 27 20:16 boinc_task_state.xml
[2025-07-27 20:17:34] -rw-------. 1 boincer umatlas      1024 Jul 27 20:16 memory_monitor_summary.json
[2025-07-27 20:17:34] -rw-------. 1 boincer umatlas    299310 Jul 27 20:16 log.45743349._052995.job.log.tgz.1
[2025-07-27 20:17:34] -rw-------. 1 boincer umatlas      7767 Jul 27 20:17 heartbeat.json
[2025-07-27 20:17:34] -rw-r--r--. 1 boincer umatlas        27 Jul 27 20:17 wrapper_checkpoint.txt
[2025-07-27 20:17:34] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 20:17 boinc_mmap_file
[2025-07-27 20:17:34] -rw-------. 1 boincer umatlas       823 Jul 27 20:17 pilotlog.txt
[2025-07-27 20:17:34] -rw-------. 1 boincer umatlas        95 Jul 27 20:17 pilot_heartbeat.json
[2025-07-27 20:17:34] -rw-------. 1 boincer umatlas    516099 Jul 27 20:17 log.45743349._052995.job.log.1
[2025-07-27 20:17:34] -rw-------. 1 boincer umatlas       357 Jul 27 20:17 output.list
[2025-07-27 20:17:34] -rw-r--r--. 1 boincer umatlas       620 Jul 27 20:17 runtime_log
[2025-07-27 20:17:34] -rw-------. 1 boincer umatlas    839680 Jul 27 20:17 result.tar.gz
[2025-07-27 20:17:34] -rw-------. 1 boincer umatlas       651 Jul 27 20:17 WunKDmmRK07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmTzVLDmjqbcum.diag
[2025-07-27 20:17:34] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 20:17 runtime_log.err
[2025-07-27 20:17:34] -rw-r--r--. 1 boincer umatlas     21751 Jul 27 20:17 stderr.txt
[2025-07-27 20:17:34] HITS file was successfully produced:
[2025-07-27 20:17:34] -rw-------. 1 boincer umatlas 203324879 Jul 27 20:16 shared/HITS.pool.root.1
[2025-07-27 20:17:34]  *** Contents of shared directory: ***
[2025-07-27 20:17:34] total 346028
[2025-07-27 20:17:34] -rw-r--r--. 2 boincer umatlas 149598272 Jul 27 18:47 ATLAS.root_0
[2025-07-27 20:17:34] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 18:47 start_atlas.sh
[2025-07-27 20:17:34] -rw-r--r--. 2 boincer umatlas    542892 Jul 27 18:47 input.tar.gz
[2025-07-27 20:17:34] -rw-------. 1 boincer umatlas 203324879 Jul 27 20:16 HITS.pool.root.1
[2025-07-27 20:17:34] -rw-------. 1 boincer umatlas    839680 Jul 27 20:17 result.tar.gz
20:17:36 (3969291): run_atlas exited; CPU time 38886.027654
20:17:36 (3969291): called boinc_finish(0)

</stderr_txt>
]]>

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