Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:18:20 (1604642): wrapper (7.7.26015): starting
11:18:20 (1604642): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 11:18:20] Arguments: --nthreads 12
[2025-07-28 11:18:20] Threads: 12
[2025-07-28 11:18:20] Checking for CVMFS
[2025-07-28 11:18:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 11:18:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 11:18:21] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 11:18:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 11:18:22] 2.13.1.0 4095 5432 132756 148843 1 212 32612664 46080000 43839 130560 0 37892138 99.910 8610322 21696 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-07-28 11:18:22] CVMFS is ok
[2025-07-28 11:18:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 11:18:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 11:18:22] Further information can be found at the LHC@home message board.
[2025-07-28 11:18:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 11:18:22] Checking for apptainer binary...
[2025-07-28 11:18:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 11:18:22] Running /usr/bin/apptainer --version
[2025-07-28 11:18:22] apptainer version 1.4.1-1.el9
[2025-07-28 11:18:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 11:18:22] mff2104.farm.particle.cz
[2025-07-28 11:18:22] apptainer works
[2025-07-28 11:18:22] Set ATHENA_PROC_NUMBER=12
[2025-07-28 11:18:22] Set ATHENA_CORE_NUMBER=12
[2025-07-28 11:18:23] Starting ATLAS job with PandaID=6747577460
[2025-07-28 11:18:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 13:13:56]  *** The last 200 lines of the pilot log: ***
[2025-07-28 13:13:56] 2025-07-28 10:56:22,415 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 13:13:56] 2025-07-28 10:56:22,792 | INFO     | PID=1613064 has CPU usage=16.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-28 13:13:56] 2025-07-28 10:56:22,792 | INFO     | .. there are 61 such processes running
[2025-07-28 13:13:56] 2025-07-28 10:56:24,922 | INFO     | monitor loop #416: job 0:6747577460 is in state 'finished'
[2025-07-28 13:13:56] 2025-07-28 10:56:24,922 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 13:13:56] 2025-07-28 10:56:27,427 | INFO     | monitor loop #417: job 0:6747577460 is in state 'finished'
[2025-07-28 13:13:56] 2025-07-28 10:56:27,427 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 13:13:56] 2025-07-28 10:56:29,932 | INFO     | monitor loop #418: job 0:6747577460 is in state 'finished'
[2025-07-28 13:13:56] 2025-07-28 10:56:29,932 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 13:13:56] 2025-07-28 10:56:32,438 | INFO     | monitor loop #419: job 0:6747577460 is in state 'finished'
[2025-07-28 13:13:56] 2025-07-28 10:56:32,438 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 13:13:56] 2025-07-28 10:56:34,947 | INFO     | monitor loop #420: job 0:6747577460 is in state 'finished'
[2025-07-28 13:13:56] 2025-07-28 10:56:34,947 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 13:13:56] 2025-07-28 10:56:37,454 | INFO     | monitor loop #421: job 0:6747577460 is in state 'finished'
[2025-07-28 13:13:56] 2025-07-28 10:56:37,454 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 13:13:56] 2025-07-28 10:56:39,959 | INFO     | monitor loop #422: job 0:6747577460 is in state 'finished'
[2025-07-28 13:13:56] 2025-07-28 10:56:39,959 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 13:13:56] 2025-07-28 10:56:42,463 | INFO     | monitor loop #423: job 0:6747577460 is in state 'finished'
[2025-07-28 13:13:56] 2025-07-28 10:56:42,463 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 13:13:56] 2025-07-28 10:56:44,969 | INFO     | monitor loop #424: job 0:6747577460 is in state 'finished'
[2025-07-28 13:13:56] 2025-07-28 10:56:44,970 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 13:13:56] 2025-07-28 10:56:46,318 | INFO     | PID=1613064 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 13:13:56] 2025-07-28 10:56:46,318 | INFO     | .. there are 61 such processes running
[2025-07-28 13:13:56] 2025-07-28 10:56:47,486 | INFO     | monitor loop #425: job 0:6747577460 is in state 'finished'
[2025-07-28 13:13:56] 2025-07-28 10:56:47,486 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 13:13:56] 2025-07-28 10:56:49,992 | INFO     | monitor loop #426: job 0:6747577460 is in state 'finished'
[2025-07-28 13:13:56] 2025-07-28 10:56:49,992 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 13:13:56] 2025-07-28 10:56:52,501 | INFO     | monitor loop #427: job 0:6747577460 is in state 'finished'
[2025-07-28 13:13:56] 2025-07-28 10:56:52,502 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 13:13:56] 2025-07-28 10:56:55,015 | INFO     | monitor loop #428: job 0:6747577460 is in state 'finished'
[2025-07-28 13:13:56] 2025-07-28 10:56:55,015 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 13:13:56] 2025-07-28 10:56:57,526 | INFO     | monitor loop #429: job 0:6747577460 is in state 'finished'
[2025-07-28 13:13:56] 2025-07-28 10:56:57,527 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 13:13:56] 2025-07-28 10:57:00,041 | INFO     | monitor loop #430: job 0:6747577460 is in state 'finished'
[2025-07-28 13:13:56] 2025-07-28 10:57:00,041 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 13:13:56] 2025-07-28 10:57:01,297 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 13:13:56] 2025-07-28 10:57:01,333 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2750.83440625
[2025-07-28 13:13:56] 2025-07-28 10:57:01,351 | INFO     | using path: /scratch/.boinc/slots/6/PanDA_Pilot-6747577460/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 13:13:56] 2025-07-28 10:57:01,352 | INFO     | extracted standard info from prmon json
[2025-07-28 13:13:56] 2025-07-28 10:57:01,352 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 13:13:56] 2025-07-28 10:57:01,352 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 13:13:56] 2025-07-28 10:57:01,352 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 13:13:56] 2025-07-28 10:57:01,353 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 13:13:56] 2025-07-28 10:57:01,355 | INFO     | fitting pss+swap vs Time
[2025-07-28 13:13:56] 2025-07-28 10:57:01,355 | INFO     | sum of square deviations: 190401008.98823565
[2025-07-28 13:13:56] 2025-07-28 10:57:01,355 | INFO     | sum of deviations: 5155227114.258821
[2025-07-28 13:13:56] 2025-07-28 10:57:01,355 | INFO     | mean x: 1753697439.0117648
[2025-07-28 13:13:56] 2025-07-28 10:57:01,355 | INFO     | mean y: 2740350.7411764706
[2025-07-28 13:13:56] 2025-07-28 10:57:01,355 | INFO     | -- intersect: -47479721196.28931
[2025-07-28 13:13:56] 2025-07-28 10:57:01,356 | INFO     | intersect: -47479721196.28931
[2025-07-28 13:13:56] 2025-07-28 10:57:01,356 | INFO     | chi2: 1.5216265797168895
[2025-07-28 13:13:56] 2025-07-28 10:57:01,356 | INFO     | -- intersect: -47479721196.28931
[2025-07-28 13:13:56] 2025-07-28 10:57:01,356 | INFO     | current memory leak: 27.08 B/s (using 85 data points, chi2=1.52)
[2025-07-28 13:13:56] 2025-07-28 10:57:01,356 | INFO     | could have reported an average CPU frequency of 2743 MHz (7 samples)
[2025-07-28 13:13:56] 2025-07-28 10:57:01,357 | INFO     | ..............................
[2025-07-28 13:13:56] 2025-07-28 10:57:01,357 | INFO     | . Timing measurements:
[2025-07-28 13:13:56] 2025-07-28 10:57:01,357 | INFO     | . get job = 0 s
[2025-07-28 13:13:56] 2025-07-28 10:57:01,357 | INFO     | . initial setup = 6 s
[2025-07-28 13:13:56] 2025-07-28 10:57:01,357 | INFO     | . payload setup = 73 s
[2025-07-28 13:13:56] 2025-07-28 10:57:01,357 | INFO     | . stage-in = 0 s
[2025-07-28 13:13:56] 2025-07-28 10:57:01,357 | INFO     | . payload execution = 5629 s
[2025-07-28 13:13:56] 2025-07-28 10:57:01,357 | INFO     | . stage-out = 2 s
[2025-07-28 13:13:56] 2025-07-28 10:57:01,357 | INFO     | . log creation = 0 s
[2025-07-28 13:13:56] 2025-07-28 10:57:01,357 | INFO     | ..............................
[2025-07-28 13:13:56] 2025-07-28 10:57:01,473 | INFO     | 
[2025-07-28 13:13:56] 2025-07-28 10:57:01,474 | INFO     | job summary report
[2025-07-28 13:13:56] 2025-07-28 10:57:01,474 | INFO     | --------------------------------------------------
[2025-07-28 13:13:56] 2025-07-28 10:57:01,474 | INFO     | PanDA job id: 6747577460
[2025-07-28 13:13:56] 2025-07-28 10:57:01,474 | INFO     | task id: 45743349
[2025-07-28 13:13:56] 2025-07-28 10:57:01,474 | INFO     | errors: (none)
[2025-07-28 13:13:56] 2025-07-28 10:57:01,474 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 13:13:56] 2025-07-28 10:57:01,474 | INFO     | pilot state: finished 
[2025-07-28 13:13:56] 2025-07-28 10:57:01,474 | INFO     | transexitcode: 0
[2025-07-28 13:13:56] 2025-07-28 10:57:01,474 | INFO     | exeerrorcode: 0
[2025-07-28 13:13:56] 2025-07-28 10:57:01,475 | INFO     | exeerrordiag: 
[2025-07-28 13:13:56] 2025-07-28 10:57:01,476 | INFO     | exitcode: 0
[2025-07-28 13:13:56] 2025-07-28 10:57:01,476 | INFO     | exitmsg: OK
[2025-07-28 13:13:56] 2025-07-28 10:57:01,476 | INFO     | cpuconsumptiontime: 44370 s
[2025-07-28 13:13:56] 2025-07-28 10:57:01,476 | INFO     | nevents: 400
[2025-07-28 13:13:56] 2025-07-28 10:57:01,476 | INFO     | neventsw: 0
[2025-07-28 13:13:56] 2025-07-28 10:57:01,476 | INFO     | pid: 1632192
[2025-07-28 13:13:56] 2025-07-28 10:57:01,476 | INFO     | pgrp: 1632192
[2025-07-28 13:13:56] 2025-07-28 10:57:01,476 | INFO     | corecount: 12
[2025-07-28 13:13:56] 2025-07-28 10:57:01,476 | INFO     | event service: False
[2025-07-28 13:13:56] 2025-07-28 10:57:01,476 | INFO     | sizes: {0: 2396647, 1: 2397333, 2: 2397532, 13: 2397532, 23: 2397588, 34: 2397616, 41: 2398034, 45: 2398062, 5706: 2424800, 5707: 2424799, 5709: 2433855, 5712: 243
[2025-07-28 13:13:56] 2025-07-28 10:57:01,476 | INFO     | --------------------------------------------------
[2025-07-28 13:13:56] 2025-07-28 10:57:01,476 | INFO     | 
[2025-07-28 13:13:56] 2025-07-28 10:57:01,477 | INFO     | executing command: ls -lF /scratch/.boinc/slots/6
[2025-07-28 13:13:56] 2025-07-28 10:57:01,682 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 13:13:56] 2025-07-28 10:57:01,682 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 13:13:56] 2025-07-28 10:57:01,682 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 13:13:56] 2025-07-28 10:57:01,682 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 13:13:56] 2025-07-28 10:57:01,682 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 13:13:56] 2025-07-28 10:57:01,683 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 13:13:56] 2025-07-28 10:57:01,683 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 13:13:56] 2025-07-28 10:57:01,683 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 13:13:56] 2025-07-28 10:57:01,683 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 13:13:56] 2025-07-28 10:57:01,683 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 13:13:56] 2025-07-28 10:57:01,683 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 13:13:56] 2025-07-28 10:57:01,683 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 13:13:56] 2025-07-28 10:57:01,683 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 13:13:56] 2025-07-28 10:57:01,683 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 13:13:56] 2025-07-28 10:57:01,683 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 13:13:56] 2025-07-28 10:57:01,683 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 13:13:56] 2025-07-28 10:57:01,683 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 13:13:56] 2025-07-28 10:57:01,684 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 13:13:56] 2025-07-28 10:57:01,684 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 13:13:56] 2025-07-28 10:57:01,684 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 13:13:56] 2025-07-28 10:57:01,684 | INFO     | job 6747577460 has completed (purged errors)
[2025-07-28 13:13:56] 2025-07-28 10:57:01,684 | INFO     | overall cleanup function is called
[2025-07-28 13:13:56] 2025-07-28 10:57:02,699 | INFO     | --- collectZombieJob: --- 10, [1632192]
[2025-07-28 13:13:56] 2025-07-28 10:57:02,699 | INFO     | zombie collector waiting for pid 1632192
[2025-07-28 13:13:56] 2025-07-28 10:57:02,699 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 13:13:56] 2025-07-28 10:57:02,699 | INFO     | collected zombie processes
[2025-07-28 13:13:56] 2025-07-28 10:57:02,699 | INFO     | will attempt to kill all subprocesses of pid=1632192
[2025-07-28 13:13:56] 2025-07-28 10:57:03,635 | INFO     | process IDs to be killed: [1632192] (in reverse order)
[2025-07-28 13:13:56] 2025-07-28 10:57:04,188 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 13:13:56] 2025-07-28 10:57:04,189 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 13:13:56] 2025-07-28 10:57:04,225 | INFO     | did not find any defunct processes belonging to 1632192
[2025-07-28 13:13:56] 2025-07-28 10:57:04,251 | INFO     | did not find any defunct processes belonging to 1632192
[2025-07-28 13:13:56] 2025-07-28 10:57:04,252 | INFO     | ready for new job
[2025-07-28 13:13:56] 2025-07-28 10:57:04,252 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 13:13:56] 2025-07-28 10:57:04,254 | INFO     | ***************************************
[2025-07-28 13:13:56] 2025-07-28 10:57:04,254 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 13:13:56] 2025-07-28 10:57:04,254 | INFO     | ***************************************
[2025-07-28 13:13:56] 2025-07-28 10:57:04,254 | INFO     | 
[2025-07-28 13:13:56] 2025-07-28 10:57:04,261 | INFO     | architecture information:
[2025-07-28 13:13:56] 2025-07-28 10:57:04,263 | INFO     | executing command: cat /etc/os-release
[2025-07-28 13:13:56] 2025-07-28 10:57:04,364 | INFO     | cat /etc/os-release:
[2025-07-28 13:13:56] NAME="CentOS Linux"
[2025-07-28 13:13:56] VERSION="7 (Core)"
[2025-07-28 13:13:56] ID="centos"
[2025-07-28 13:13:56] ID_LIKE="rhel fedora"
[2025-07-28 13:13:56] VERSION_ID="7"
[2025-07-28 13:13:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 13:13:56] ANSI_COLOR="0;31"
[2025-07-28 13:13:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 13:13:56] HOME_URL="https://www.centos.org/"
[2025-07-28 13:13:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 13:13:56] 
[2025-07-28 13:13:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 13:13:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 13:13:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 13:13:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 13:13:56] 
[2025-07-28 13:13:56] 2025-07-28 10:57:04,364 | INFO     | ***************************************
[2025-07-28 13:13:56] 2025-07-28 10:57:04,867 | INFO     | executing command: df -mP /scratch/.boinc/slots/6
[2025-07-28 13:13:56] 2025-07-28 10:57:04,988 | INFO     | sufficient remaining disk space (1582931378176 B)
[2025-07-28 13:13:56] 2025-07-28 10:57:04,988 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 13:13:56] 2025-07-28 10:57:04,989 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 13:13:56] 2025-07-28 10:57:04,989 | INFO     | update_server=False
[2025-07-28 13:13:56] 2025-07-28 10:57:04,989 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 13:13:56] 2025-07-28 10:57:05,075 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 13:13:56] 2025-07-28 10:57:05,076 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-28 13:13:56] 2025-07-28 10:57:05,077 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-28 13:13:56] 2025-07-28 10:57:05,077 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 13:13:56] 2025-07-28 10:57:05,077 | INFO     | will abort loop
[2025-07-28 13:13:56] 2025-07-28 10:57:05,166 | INFO     | all payload control threads have been joined
[2025-07-28 13:13:56] 2025-07-28 10:57:05,246 | INFO     | all job control threads have been joined
[2025-07-28 13:13:56] 2025-07-28 10:57:05,257 | INFO     | all data control threads have been joined
[2025-07-28 13:13:56] 2025-07-28 10:57:05,995 | INFO     | [job] retrieve thread has finished
[2025-07-28 13:13:56] 2025-07-28 10:57:06,089 | INFO     | [job] job monitor thread has finished
[2025-07-28 13:13:56] 2025-07-28 10:57:06,117 | INFO     | [payload] failed_post thread has finished
[2025-07-28 13:13:56] 2025-07-28 10:57:06,173 | INFO     | [payload] control thread has finished
[2025-07-28 13:13:56] 2025-07-28 10:57:06,252 | INFO     | [job] control thread has finished
[2025-07-28 13:13:56] 2025-07-28 10:57:06,262 | INFO     | [data] control thread has finished
[2025-07-28 13:13:56] 2025-07-28 10:57:06,492 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 13:13:56] 2025-07-28 10:57:06,663 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 13:13:56] 2025-07-28 10:57:06,750 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 13:13:56] 2025-07-28 10:57:06,752 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 13:13:56] 2025-07-28 10:57:06,833 | INFO     | [job] validate thread has finished
[2025-07-28 13:13:56] 2025-07-28 10:57:07,046 | INFO     | [payload] validate_post thread has finished
[2025-07-28 13:13:56] 2025-07-28 10:57:07,084 | INFO     | [data] copytool_out thread has finished
[2025-07-28 13:13:56] 2025-07-28 10:57:07,162 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 13:13:56] 2025-07-28 10:57:07,281 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 13:13:56] 2025-07-28 10:57:07,482 | INFO     | [data] copytool_in thread has finished
[2025-07-28 13:13:56] 2025-07-28 10:57:07,499 | INFO     | [job] queue monitor thread has finished
[2025-07-28 13:13:56] 2025-07-28 10:57:10,765 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 13:13:56] 2025-07-28 10:57:11,599 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139860399613760)>', '<ExcThread(monitor, started 139859763128064)>']
[2025-07-28 13:13:56] 2025-07-28 10:57:16,624 | INFO     | all workflow threads have been joined
[2025-07-28 13:13:56] 2025-07-28 10:57:16,625 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 13:13:56] 2025-07-28 10:57:16,626 | INFO     | traces error code: 0
[2025-07-28 13:13:56] 2025-07-28 10:57:16,626 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 13:13:56] 2025-07-28 10:57:35,607 | INFO     | PID=1613064 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 13:13:56] 2025-07-28 10:57:35,608 | INFO     | .. there are 61 such processes running
[2025-07-28 13:13:56] 2025-07-28 10:57:35,612 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 13:13:56] 2025-07-28 10:57:35,612 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 13:13:56] 2025-07-28 10:57:35,612 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 13:13:56] 2025-07-28 10:57:35,612 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 13:13:56] 2025-07-28 10:57:35,612 | INFO     | [monitor] control thread has ended
[2025-07-28 13:13:56] 2025-07-28 10:57:36,051 [wrapper] ==== pilot stdout END ====
[2025-07-28 13:13:56] 2025-07-28 10:57:36,095 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 13:13:56] 2025-07-28 10:57:36,140 [wrapper] pilotpid: 1613064
[2025-07-28 13:13:56] 2025-07-28 10:57:36,189 [wrapper] Pilot exit status: 0
[2025-07-28 13:13:56] 2025-07-28 10:57:36,337 [wrapper] pandaids: 6747577460
[2025-07-28 13:13:56] 2025-07-28 10:57:36,690 [wrapper] cleanup supervisor_pilot 1913805 1613065
[2025-07-28 13:13:56] 2025-07-28 10:57:36,715 [wrapper] Test setup, not cleaning
[2025-07-28 13:13:56] 2025-07-28 10:57:36,768 [wrapper] apfmon messages muted
[2025-07-28 13:13:56] 2025-07-28 10:57:36,814 [wrapper] ==== wrapper stdout END ====
[2025-07-28 13:13:56] 2025-07-28 10:57:36,847 [wrapper] ==== wrapper stderr END ====
[2025-07-28 13:13:56]  *** Error codes and diagnostics ***
[2025-07-28 13:13:56]     "exeErrorCode": 0,
[2025-07-28 13:13:56]     "exeErrorDiag": "",
[2025-07-28 13:13:56]     "pilotErrorCode": 0,
[2025-07-28 13:13:56]     "pilotErrorDiag": "",
[2025-07-28 13:13:56]  *** Listing of results directory ***
[2025-07-28 13:13:56] total 350088
[2025-07-28 13:13:56] -rw-r--r-- 1 boinc boinc    530466 Jul 27 19:29 pilot3.tar.gz
[2025-07-28 13:13:56] -rw-r--r-- 1 boinc boinc      5112 Jul 27 19:34 queuedata.json
[2025-07-28 13:13:56] -rwx------ 1 boinc boinc     36292 Jul 27 19:34 runpilot2-wrapper.sh
[2025-07-28 13:13:56] -rw-r--r-- 1 boinc boinc       100 Jul 28 11:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 13:13:56] -rwxr-xr-x 1 boinc boinc      7986 Jul 28 11:18 run_atlas
[2025-07-28 13:13:56] -rw-r--r-- 1 boinc boinc       105 Jul 28 11:18 job.xml
[2025-07-28 13:13:56] -rw-r--r-- 2 boinc boinc 144974506 Jul 28 11:18 EVNT.45743347._002885.pool.root.1
[2025-07-28 13:13:56] -rw-r--r-- 1 boinc boinc      6664 Jul 28 11:18 init_data.xml
[2025-07-28 13:13:56] drwxrwx--x 2 boinc boinc      4096 Jul 28 11:18 shared
[2025-07-28 13:13:56] -rw-r--r-- 2 boinc boinc    542889 Jul 28 11:18 input.tar.gz
[2025-07-28 13:13:56] -rw-r--r-- 2 boinc boinc     15095 Jul 28 11:18 start_atlas.sh
[2025-07-28 13:13:56] -rw-r--r-- 1 boinc boinc         0 Jul 28 11:18 boinc_lockfile
[2025-07-28 13:13:56] -rw-r--r-- 1 boinc boinc      2563 Jul 28 11:18 pandaJob.out
[2025-07-28 13:13:56] -rw------- 1 boinc boinc    978460 Jul 28 11:19 agis_schedconf.cvmfs.json
[2025-07-28 13:13:56] -rw------- 1 boinc boinc   1593052 Jul 28 11:19 agis_ddmendpoints.agis.ALL.json
[2025-07-28 13:13:56] drwx------ 4 boinc boinc      4096 Jul 28 11:19 pilot3
[2025-07-28 13:13:56] -rw------- 1 boinc boinc 207815559 Jul 28 12:55 HITS.45743349._052975.pool.root.1
[2025-07-28 13:13:56] -rw-r--r-- 1 boinc boinc       529 Jul 28 12:55 boinc_task_state.xml
[2025-07-28 13:13:56] -rw------- 1 boinc boinc      1024 Jul 28 12:56 memory_monitor_summary.json
[2025-07-28 13:13:56] -rw------- 1 boinc boinc    374453 Jul 28 12:56 log.45743349._052975.job.log.tgz.1
[2025-07-28 13:13:56] -rw------- 1 boinc boinc      7776 Jul 28 12:57 heartbeat.json
[2025-07-28 13:13:56] -rw------- 1 boinc boinc        95 Jul 28 12:57 pilot_heartbeat.json
[2025-07-28 13:13:56] -rw------- 1 boinc boinc       823 Jul 28 12:57 pilotlog.txt
[2025-07-28 13:13:56] -rw------- 1 boinc boinc    538478 Jul 28 12:57 log.45743349._052975.job.log.1
[2025-07-28 13:13:56] -rw------- 1 boinc boinc       357 Jul 28 12:57 output.list
[2025-07-28 13:13:56] -rw-r--r-- 1 boinc boinc       620 Jul 28 12:57 runtime_log
[2025-07-28 13:13:56] -rw------- 1 boinc boinc    931840 Jul 28 12:57 result.tar.gz
[2025-07-28 13:13:56] -rw-r--r-- 1 boinc boinc      8721 Jul 28 12:57 runtime_log.err
[2025-07-28 13:13:56] -rw------- 1 boinc boinc       663 Jul 28 12:57 NlQKDmmRK07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmBzVLDmegZEHn.diag
[2025-07-28 13:13:56] -rw-r--r-- 1 boinc boinc        26 Jul 28 13:13 wrapper_checkpoint.txt
[2025-07-28 13:13:56] -rw-r--r-- 1 boinc boinc      8192 Jul 28 13:13 boinc_mmap_file
[2025-07-28 13:13:56] -rw-r--r-- 1 boinc boinc     22580 Jul 28 13:13 stderr.txt
[2025-07-28 13:13:56] HITS file was successfully produced:
[2025-07-28 13:13:56] -rw------- 1 boinc boinc 207815559 Jul 28 12:55 shared/HITS.pool.root.1
[2025-07-28 13:13:56]  *** Contents of shared directory: ***
[2025-07-28 13:13:56] total 345992
[2025-07-28 13:13:56] -rw-r--r-- 2 boinc boinc 144974506 Jul 28 11:18 ATLAS.root_0
[2025-07-28 13:13:56] -rw-r--r-- 2 boinc boinc    542889 Jul 28 11:18 input.tar.gz
[2025-07-28 13:13:56] -rw-r--r-- 2 boinc boinc     15095 Jul 28 11:18 start_atlas.sh
[2025-07-28 13:13:56] -rw------- 1 boinc boinc 207815559 Jul 28 12:55 HITS.pool.root.1
[2025-07-28 13:13:56] -rw------- 1 boinc boinc    931840 Jul 28 12:57 result.tar.gz
13:13:58 (1604642): run_atlas exited; CPU time 44625.708302
13:13:58 (1604642): called boinc_finish(0)

</stderr_txt>
]]>

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