Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:33:56 (15305): wrapper (7.7.26015): starting
18:33:56 (15305): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 18:33:56] Arguments: --nthreads 8
[2025-07-27 18:33:56] Threads: 8
[2025-07-27 18:33:56] Checking for CVMFS
[2025-07-27 18:33:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 18:33:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 18:33:56] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 18:33:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 18:33:56] 2.11.2.0 2839 112607 74924 148827 0 59 11620009 20275200 1 130560 0 29727443 99.961 10063368 10417 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 18:33:56] CVMFS is ok
[2025-07-27 18:33:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 18:33:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 18:33:56] Further information can be found at the LHC@home message board.
[2025-07-27 18:33:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 18:33:56] Checking for apptainer binary...
[2025-07-27 18:33:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 18:33:56] Running /usr/bin/apptainer --version
[2025-07-27 18:33:56] apptainer version 1.3.2-1.el7
[2025-07-27 18:33:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 18:33:58] c-204-19.aglt2.org
[2025-07-27 18:33:58] apptainer works
[2025-07-27 18:33:58] Set ATHENA_PROC_NUMBER=8
[2025-07-27 18:33:58] Set ATHENA_CORE_NUMBER=8
[2025-07-27 18:33:58] Starting ATLAS job with PandaID=6747697947
[2025-07-27 18:33:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 21:01:44]  *** The last 200 lines of the pilot log: ***
[2025-07-27 21:01:44] 2025-07-28 01:01:10,245 | INFO     | PID=18951 has CPU usage=7.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 21:01:44] 2025-07-28 01:01:11,670 | INFO     | monitor loop #654: job 0:6747697947 is in state 'finished'
[2025-07-27 21:01:44] 2025-07-28 01:01:11,670 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 21:01:44] 2025-07-28 01:01:12,000 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-27 21:01:44] 2025-07-28 01:01:12,004 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1712.5
[2025-07-27 21:01:44] 2025-07-28 01:01:12,006 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747697947/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 21:01:44] 2025-07-28 01:01:12,007 | INFO     | extracted standard info from prmon json
[2025-07-27 21:01:44] 2025-07-28 01:01:12,007 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 21:01:44] 2025-07-28 01:01:12,007 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 21:01:44] 2025-07-28 01:01:12,008 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 21:01:44] 2025-07-28 01:01:12,008 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 21:01:44] 2025-07-28 01:01:12,012 | INFO     | fitting pss+swap vs Time
[2025-07-27 21:01:44] 2025-07-28 01:01:12,012 | INFO     | sum of square deviations: 925859220.0
[2025-07-27 21:01:44] 2025-07-28 01:01:12,013 | INFO     | sum of deviations: -4145017313.499999
[2025-07-27 21:01:44] 2025-07-28 01:01:12,013 | INFO     | mean x: 1753660049.5
[2025-07-27 21:01:44] 2025-07-28 01:01:12,013 | INFO     | mean y: 2532270.9930555555
[2025-07-27 21:01:44] 2025-07-28 01:01:12,013 | INFO     | -- intersect: 7853565246.795539
[2025-07-27 21:01:44] 2025-07-28 01:01:12,013 | INFO     | intersect: 7853565246.795539
[2025-07-27 21:01:44] 2025-07-28 01:01:12,014 | INFO     | chi2: 1.6001305702378656
[2025-07-27 21:01:44] 2025-07-28 01:01:12,014 | INFO     | sum of square deviations: 832722590.0
[2025-07-27 21:01:44] 2025-07-28 01:01:12,015 | INFO     | sum of deviations: -3650917466.0000005
[2025-07-27 21:01:44] 2025-07-28 01:01:12,015 | INFO     | mean x: 1753659897.0
[2025-07-27 21:01:44] 2025-07-28 01:01:12,015 | INFO     | mean y: 2533080.345323741
[2025-07-27 21:01:44] 2025-07-28 01:01:12,015 | INFO     | -- intersect: 7691129047.6782875
[2025-07-27 21:01:44] 2025-07-28 01:01:12,015 | INFO     | intersect: 7691129047.6782875
[2025-07-27 21:01:44] 2025-07-28 01:01:12,015 | INFO     | chi2: 1.600419385692279
[2025-07-27 21:01:44] 2025-07-28 01:01:12,016 | INFO     | current chi2=1.600419385692279 (change=-0.018049492946719974 %)
[2025-07-27 21:01:44] 2025-07-28 01:01:12,016 | INFO     | right removable region: 138
[2025-07-27 21:01:44] 2025-07-28 01:01:12,016 | INFO     | sum of square deviations: 832722590.0
[2025-07-27 21:01:44] 2025-07-28 01:01:12,017 | INFO     | sum of deviations: -25463926558.999992
[2025-07-27 21:01:44] 2025-07-28 01:01:12,017 | INFO     | mean x: 1753660202.0
[2025-07-27 21:01:44] 2025-07-28 01:01:12,017 | INFO     | mean y: 2566615.9568345323
[2025-07-27 21:01:44] 2025-07-28 01:01:12,017 | INFO     | -- intersect: 53627957747.91723
[2025-07-27 21:01:44] 2025-07-28 01:01:12,017 | INFO     | intersect: 53627957747.91723
[2025-07-27 21:01:44] 2025-07-28 01:01:12,018 | INFO     | chi2: 0.1573496102795416
[2025-07-27 21:01:44] 2025-07-28 01:01:12,018 | INFO     | current chi2=0.1573496102795416 (change=90.16645183798026 %)
[2025-07-27 21:01:44] 2025-07-28 01:01:12,018 | INFO     | sum of square deviations: 746051197.5
[2025-07-27 21:01:44] 2025-07-28 01:01:12,019 | INFO     | sum of deviations: -25011583133.000008
[2025-07-27 21:01:44] 2025-07-28 01:01:12,019 | INFO     | mean x: 1753660354.5
[2025-07-27 21:01:44] 2025-07-28 01:01:12,019 | INFO     | mean y: 2565724.3582089553
[2025-07-27 21:01:44] 2025-07-28 01:01:12,019 | INFO     | -- intersect: 58794538568.31711
[2025-07-27 21:01:44] 2025-07-28 01:01:12,019 | INFO     | intersect: 58794538568.31711
[2025-07-27 21:01:44] 2025-07-28 01:01:12,019 | INFO     | chi2: 0.13509375668609575
[2025-07-27 21:01:44] 2025-07-28 01:01:12,019 | INFO     | current chi2=0.13509375668609575 (change=14.144206365625516 %)
[2025-07-27 21:01:44] 2025-07-28 01:01:12,020 | INFO     | left removable region: 20
[2025-07-27 21:01:44] 2025-07-28 01:01:12,020 | INFO     | sum of square deviations: 509440249.5
[2025-07-27 21:01:44] 2025-07-28 01:01:12,020 | INFO     | sum of deviations: -15981014301.0
[2025-07-27 21:01:44] 2025-07-28 01:01:12,021 | INFO     | mean x: 1753660476.5
[2025-07-27 21:01:44] 2025-07-28 01:01:12,021 | INFO     | mean y: 2551652.8983050846
[2025-07-27 21:01:44] 2025-07-28 01:01:12,021 | INFO     | -- intersect: 55014445945.80296
[2025-07-27 21:01:44] 2025-07-28 01:01:12,021 | INFO     | intersect: 55014445945.80296
[2025-07-27 21:01:44] 2025-07-28 01:01:12,021 | INFO     | chi2: 0.11997160464044701
[2025-07-27 21:01:44] 2025-07-28 01:01:12,021 | INFO     | -- intersect: 55014445945.80296
[2025-07-27 21:01:44] 2025-07-28 01:01:12,022 | INFO     | current memory leak: -31.37 B/s (using 118 data points, chi2=0.12)
[2025-07-27 21:01:44] 2025-07-28 01:01:12,022 | INFO     | could have reported an average CPU frequency of 1991 MHz (8 samples)
[2025-07-27 21:01:44] 2025-07-28 01:01:12,022 | INFO     | ..............................
[2025-07-27 21:01:44] 2025-07-28 01:01:12,022 | INFO     | . Timing measurements:
[2025-07-27 21:01:44] 2025-07-28 01:01:12,022 | INFO     | . get job = 0 s
[2025-07-27 21:01:44] 2025-07-28 01:01:12,022 | INFO     | . initial setup = 3 s
[2025-07-27 21:01:44] 2025-07-28 01:01:12,023 | INFO     | . payload setup = 11 s
[2025-07-27 21:01:44] 2025-07-28 01:01:12,023 | INFO     | . stage-in = 0 s
[2025-07-27 21:01:44] 2025-07-28 01:01:12,023 | INFO     | . payload execution = 8775 s
[2025-07-27 21:01:44] 2025-07-28 01:01:12,023 | INFO     | . stage-out = 0 s
[2025-07-27 21:01:44] 2025-07-28 01:01:12,023 | INFO     | . log creation = 0 s
[2025-07-27 21:01:44] 2025-07-28 01:01:12,023 | INFO     | ..............................
[2025-07-27 21:01:44] 2025-07-28 01:01:12,478 | INFO     | 
[2025-07-27 21:01:44] 2025-07-28 01:01:12,478 | INFO     | job summary report
[2025-07-27 21:01:44] 2025-07-28 01:01:12,479 | INFO     | --------------------------------------------------
[2025-07-27 21:01:44] 2025-07-28 01:01:12,479 | INFO     | PanDA job id: 6747697947
[2025-07-27 21:01:44] 2025-07-28 01:01:12,479 | INFO     | task id: 45743349
[2025-07-27 21:01:44] 2025-07-28 01:01:12,479 | INFO     | errors: (none)
[2025-07-27 21:01:44] 2025-07-28 01:01:12,479 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 21:01:44] 2025-07-28 01:01:12,479 | INFO     | pilot state: finished 
[2025-07-27 21:01:44] 2025-07-28 01:01:12,480 | INFO     | transexitcode: 0
[2025-07-27 21:01:44] 2025-07-28 01:01:12,480 | INFO     | exeerrorcode: 0
[2025-07-27 21:01:44] 2025-07-28 01:01:12,480 | INFO     | exeerrordiag: 
[2025-07-27 21:01:44] 2025-07-28 01:01:12,480 | INFO     | exitcode: 0
[2025-07-27 21:01:44] 2025-07-28 01:01:12,480 | INFO     | exitmsg: OK
[2025-07-27 21:01:44] 2025-07-28 01:01:12,480 | INFO     | cpuconsumptiontime: 64687 s
[2025-07-27 21:01:44] 2025-07-28 01:01:12,481 | INFO     | nevents: 400
[2025-07-27 21:01:44] 2025-07-28 01:01:12,481 | INFO     | neventsw: 0
[2025-07-27 21:01:44] 2025-07-28 01:01:12,481 | INFO     | pid: 25470
[2025-07-27 21:01:44] 2025-07-28 01:01:12,481 | INFO     | pgrp: 25470
[2025-07-27 21:01:44] 2025-07-28 01:01:12,481 | INFO     | corecount: 8
[2025-07-27 21:01:44] 2025-07-28 01:01:12,482 | INFO     | event service: False
[2025-07-27 21:01:44] 2025-07-28 01:01:12,482 | INFO     | sizes: {0: 2396591, 1: 2397447, 7: 2397709, 12: 2397737, 8791: 2425701, 8792: 2434699, 8795: 2434883, 8801: 2435077}
[2025-07-27 21:01:44] 2025-07-28 01:01:12,482 | INFO     | --------------------------------------------------
[2025-07-27 21:01:44] 2025-07-28 01:01:12,482 | INFO     | 
[2025-07-27 21:01:44] 2025-07-28 01:01:12,482 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 21:01:44] 2025-07-28 01:01:12,513 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 21:01:44] 2025-07-28 01:01:12,514 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 21:01:44] 2025-07-28 01:01:12,514 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 21:01:44] 2025-07-28 01:01:12,514 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 21:01:44] 2025-07-28 01:01:12,514 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 21:01:44] 2025-07-28 01:01:12,515 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 21:01:44] 2025-07-28 01:01:12,515 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 21:01:44] 2025-07-28 01:01:12,515 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 21:01:44] 2025-07-28 01:01:12,515 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 21:01:44] 2025-07-28 01:01:12,515 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 21:01:44] 2025-07-28 01:01:12,515 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 21:01:44] 2025-07-28 01:01:12,516 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 21:01:44] 2025-07-28 01:01:12,516 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 21:01:44] 2025-07-28 01:01:12,516 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 21:01:44] 2025-07-28 01:01:12,516 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 21:01:44] 2025-07-28 01:01:12,516 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 21:01:44] 2025-07-28 01:01:12,517 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 21:01:44] 2025-07-28 01:01:12,517 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 21:01:44] 2025-07-28 01:01:12,517 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 21:01:44] 2025-07-28 01:01:12,517 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 21:01:44] 2025-07-28 01:01:12,517 | INFO     | job 6747697947 has completed (purged errors)
[2025-07-27 21:01:44] 2025-07-28 01:01:12,518 | INFO     | overall cleanup function is called
[2025-07-27 21:01:44] 2025-07-28 01:01:13,526 | INFO     | --- collectZombieJob: --- 10, [25470]
[2025-07-27 21:01:44] 2025-07-28 01:01:13,527 | INFO     | zombie collector waiting for pid 25470
[2025-07-27 21:01:44] 2025-07-28 01:01:13,527 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 21:01:44] 2025-07-28 01:01:13,527 | INFO     | collected zombie processes
[2025-07-27 21:01:44] 2025-07-28 01:01:13,527 | INFO     | will attempt to kill all subprocesses of pid=25470
[2025-07-27 21:01:44] 2025-07-28 01:01:13,619 | INFO     | process IDs to be killed: [25470] (in reverse order)
[2025-07-27 21:01:44] 2025-07-28 01:01:13,680 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 21:01:44] 2025-07-28 01:01:13,681 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 21:01:44] 2025-07-28 01:01:13,685 | INFO     | did not find any defunct processes belonging to 25470
[2025-07-27 21:01:44] 2025-07-28 01:01:13,689 | INFO     | did not find any defunct processes belonging to 25470
[2025-07-27 21:01:44] 2025-07-28 01:01:13,689 | INFO     | ready for new job
[2025-07-27 21:01:44] 2025-07-28 01:01:13,689 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 21:01:44] 2025-07-28 01:01:13,691 | INFO     | ***************************************
[2025-07-27 21:01:44] 2025-07-28 01:01:13,691 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 21:01:44] 2025-07-28 01:01:13,692 | INFO     | ***************************************
[2025-07-27 21:01:44] 2025-07-28 01:01:13,692 | INFO     | 
[2025-07-27 21:01:44] 2025-07-28 01:01:13,692 | INFO     | architecture information:
[2025-07-27 21:01:44] 2025-07-28 01:01:13,693 | INFO     | executing command: cat /etc/os-release
[2025-07-27 21:01:44] 2025-07-28 01:01:13,712 | INFO     | cat /etc/os-release:
[2025-07-27 21:01:44] NAME="CentOS Linux"
[2025-07-27 21:01:44] VERSION="7 (Core)"
[2025-07-27 21:01:44] ID="centos"
[2025-07-27 21:01:44] ID_LIKE="rhel fedora"
[2025-07-27 21:01:44] VERSION_ID="7"
[2025-07-27 21:01:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 21:01:44] ANSI_COLOR="0;31"
[2025-07-27 21:01:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 21:01:44] HOME_URL="https://www.centos.org/"
[2025-07-27 21:01:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 21:01:44] 
[2025-07-27 21:01:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 21:01:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 21:01:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 21:01:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 21:01:44] 
[2025-07-27 21:01:44] 2025-07-28 01:01:13,712 | INFO     | ***************************************
[2025-07-27 21:01:44] 2025-07-28 01:01:14,215 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 21:01:44] 2025-07-28 01:01:14,236 | INFO     | sufficient remaining disk space (18710790144 B)
[2025-07-27 21:01:44] 2025-07-28 01:01:14,237 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 21:01:44] 2025-07-28 01:01:14,237 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 21:01:44] 2025-07-28 01:01:14,237 | INFO     | update_server=False
[2025-07-27 21:01:44] 2025-07-28 01:01:14,237 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 21:01:44] 2025-07-28 01:01:14,238 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 21:01:44] 2025-07-28 01:01:14,473 | INFO     | all data control threads have been joined
[2025-07-27 21:01:44] 2025-07-28 01:01:15,179 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:01:44] 2025-07-28 01:01:15,179 | INFO     | aborting loop
[2025-07-27 21:01:44] 2025-07-28 01:01:15,243 | INFO     | [job] retrieve thread has finished
[2025-07-27 21:01:44] 2025-07-28 01:01:15,367 | INFO     | [data] copytool_in thread has finished
[2025-07-27 21:01:44] 2025-07-28 01:01:15,373 | INFO     | all payload control threads have been joined
[2025-07-27 21:01:44] 2025-07-28 01:01:15,475 | INFO     | [data] control thread has finished
[2025-07-27 21:01:44] 2025-07-28 01:01:15,548 | INFO     | [payload] failed_post thread has finished
[2025-07-27 21:01:44] 2025-07-28 01:01:15,894 | INFO     | all job control threads have been joined
[2025-07-27 21:01:44] 2025-07-28 01:01:15,960 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 21:01:44] 2025-07-28 01:01:15,963 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 21:01:44] 2025-07-28 01:01:16,145 | INFO     | [payload] validate_post thread has finished
[2025-07-27 21:01:44] 2025-07-28 01:01:16,195 | INFO     | [job] job monitor thread has finished
[2025-07-27 21:01:44] 2025-07-28 01:01:16,244 | INFO     | [data] copytool_out thread has finished
[2025-07-27 21:01:44] 2025-07-28 01:01:16,331 | INFO     | [job] validate thread has finished
[2025-07-27 21:01:44] 2025-07-28 01:01:16,378 | INFO     | [payload] control thread has finished
[2025-07-27 21:01:44] 2025-07-28 01:01:16,391 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 21:01:44] 2025-07-28 01:01:16,651 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 21:01:44] 2025-07-28 01:01:16,900 | INFO     | [job] control thread has finished
[2025-07-27 21:01:44] 2025-07-28 01:01:17,130 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 21:01:44] 2025-07-28 01:01:18,134 | INFO     | [job] queue monitor thread has finished
[2025-07-27 21:01:44] 2025-07-28 01:01:20,397 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 21:01:44] 2025-07-28 01:01:24,966 | INFO     | job.realtimelogging is not enabled
[2025-07-27 21:01:44] 2025-07-28 01:01:25,971 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 21:01:44] 2025-07-28 01:01:27,391 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140112107632448)>', '<ExcThread(monitor, started 140111136147200)>']
[2025-07-27 21:01:44] 2025-07-28 01:01:32,408 | INFO     | all workflow threads have been joined
[2025-07-27 21:01:44] 2025-07-28 01:01:32,408 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 21:01:44] 2025-07-28 01:01:32,409 | INFO     | traces error code: 0
[2025-07-27 21:01:44] 2025-07-28 01:01:32,409 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 21:01:44] 2025-07-28 01:01:44,485 | INFO     | PID=18951 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 21:01:44] 2025-07-28 01:01:44,486 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 21:01:44] 2025-07-28 01:01:44,486 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 21:01:44] 2025-07-28 01:01:44,486 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 21:01:44] 2025-07-28 01:01:44,486 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 21:01:44] 2025-07-28 01:01:44,487 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 21:01:44] 2025-07-28 01:01:44,487 | INFO     | [monitor] control thread has ended
[2025-07-27 21:01:44] 2025-07-28 01:01:44,598 [wrapper] ==== pilot stdout END ====
[2025-07-27 21:01:44] 2025-07-28 01:01:44,603 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 21:01:44] 2025-07-28 01:01:44,608 [wrapper] pilotpid: 18951
[2025-07-27 21:01:44] 2025-07-28 01:01:44,612 [wrapper] Pilot exit status: 0
[2025-07-27 21:01:44] 2025-07-28 01:01:44,633 [wrapper] pandaids: 6747697947
[2025-07-27 21:01:44] 2025-07-28 01:01:44,685 [wrapper] cleanup supervisor_pilot 17571 18952
[2025-07-27 21:01:44] 2025-07-28 01:01:44,690 [wrapper] Test setup, not cleaning
[2025-07-27 21:01:44] 2025-07-28 01:01:44,694 [wrapper] apfmon messages muted
[2025-07-27 21:01:44] 2025-07-28 01:01:44,698 [wrapper] ==== wrapper stdout END ====
[2025-07-27 21:01:44] 2025-07-28 01:01:44,703 [wrapper] ==== wrapper stderr END ====
[2025-07-27 21:01:44]  *** Error codes and diagnostics ***
[2025-07-27 21:01:44]     "exeErrorCode": 0,
[2025-07-27 21:01:44]     "exeErrorDiag": "",
[2025-07-27 21:01:44]     "pilotErrorCode": 0,
[2025-07-27 21:01:44]     "pilotErrorDiag": "",
[2025-07-27 21:01:44]  *** Listing of results directory ***
[2025-07-27 21:01:44] total 352604
[2025-07-27 21:01:44] -rw-r--r-- 1 boincer umatlas    530466 Jul 27 15:51 pilot3.tar.gz
[2025-07-27 21:01:44] -rw-r--r-- 1 boincer umatlas      5112 Jul 27 16:01 queuedata.json
[2025-07-27 21:01:44] -rwx------ 1 boincer umatlas     36292 Jul 27 16:02 runpilot2-wrapper.sh
[2025-07-27 21:01:44] -rw-r--r-- 1 boincer umatlas       100 Jul 27 18:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 21:01:44] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 18:33 run_atlas
[2025-07-27 21:01:44] -rw-r--r-- 1 boincer umatlas       105 Jul 27 18:33 job.xml
[2025-07-27 21:01:44] -rw-r--r-- 2 boincer umatlas 143425815 Jul 27 18:33 EVNT.45743347._000484.pool.root.1
[2025-07-27 21:01:44] -rw-r--r-- 2 boincer umatlas    542883 Jul 27 18:33 input.tar.gz
[2025-07-27 21:01:44] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 18:33 start_atlas.sh
[2025-07-27 21:01:44] drwxrwx--x 2 boincer umatlas      4096 Jul 27 18:33 shared
[2025-07-27 21:01:44] -rw-r--r-- 1 boincer umatlas         0 Jul 27 18:33 boinc_lockfile
[2025-07-27 21:01:44] -rw-r--r-- 1 boincer umatlas      2560 Jul 27 18:33 pandaJob.out
[2025-07-27 21:01:44] -rw------- 1 boincer umatlas    980109 Jul 27 18:34 agis_schedconf.cvmfs.json
[2025-07-27 21:01:44] -rw------- 1 boincer umatlas   1593052 Jul 27 18:34 agis_ddmendpoints.agis.ALL.json
[2025-07-27 21:01:44] drwx------ 4 boincer umatlas      4096 Jul 27 18:34 pilot3
[2025-07-27 21:01:44] -rw------- 1 boincer umatlas 211492693 Jul 27 21:00 HITS.45743349._055131.pool.root.1
[2025-07-27 21:01:44] -rw-r--r-- 1 boincer umatlas       529 Jul 27 21:00 boinc_task_state.xml
[2025-07-27 21:01:44] -rw-r--r-- 1 boincer umatlas      5904 Jul 27 21:00 init_data.xml
[2025-07-27 21:01:44] -rw------- 1 boincer umatlas      1049 Jul 27 21:00 memory_monitor_summary.json
[2025-07-27 21:01:44] -rw------- 1 boincer umatlas    336558 Jul 27 21:01 log.45743349._055131.job.log.tgz.1
[2025-07-27 21:01:44] -rw------- 1 boincer umatlas      7844 Jul 27 21:01 heartbeat.json
[2025-07-27 21:01:44] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 21:01 boinc_mmap_file
[2025-07-27 21:01:44] -rw-r--r-- 1 boincer umatlas        27 Jul 27 21:01 wrapper_checkpoint.txt
[2025-07-27 21:01:44] -rw------- 1 boincer umatlas       815 Jul 27 21:01 pilotlog.txt
[2025-07-27 21:01:44] -rw------- 1 boincer umatlas        95 Jul 27 21:01 pilot_heartbeat.json
[2025-07-27 21:01:44] -rw------- 1 boincer umatlas    798651 Jul 27 21:01 log.45743349._055131.job.log.1
[2025-07-27 21:01:44] -rw------- 1 boincer umatlas       357 Jul 27 21:01 output.list
[2025-07-27 21:01:44] -rw-r--r-- 1 boincer umatlas       620 Jul 27 21:01 runtime_log
[2025-07-27 21:01:44] -rw------- 1 boincer umatlas   1157120 Jul 27 21:01 result.tar.gz
[2025-07-27 21:01:44] -rw-r--r-- 1 boincer umatlas      8660 Jul 27 21:01 runtime_log.err
[2025-07-27 21:01:44] -rw------- 1 boincer umatlas       660 Jul 27 21:01 6wwMDm1kM07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmPKWLDm2hbHkm.diag
[2025-07-27 21:01:44] -rw-r--r-- 1 boincer umatlas     21188 Jul 27 21:01 stderr.txt
[2025-07-27 21:01:44] HITS file was successfully produced:
[2025-07-27 21:01:44] -rw------- 1 boincer umatlas 211492693 Jul 27 21:00 shared/HITS.pool.root.1
[2025-07-27 21:01:44]  *** Contents of shared directory: ***
[2025-07-27 21:01:44] total 348288
[2025-07-27 21:01:44] -rw-r--r-- 2 boincer umatlas 143425815 Jul 27 18:33 ATLAS.root_0
[2025-07-27 21:01:44] -rw-r--r-- 2 boincer umatlas    542883 Jul 27 18:33 input.tar.gz
[2025-07-27 21:01:44] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 18:33 start_atlas.sh
[2025-07-27 21:01:44] -rw------- 1 boincer umatlas 211492693 Jul 27 21:00 HITS.pool.root.1
[2025-07-27 21:01:44] -rw------- 1 boincer umatlas   1157120 Jul 27 21:01 result.tar.gz
21:01:45 (15305): run_atlas exited; CPU time 64620.940710
21:01:45 (15305): called boinc_finish(0)

</stderr_txt>
]]>

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