Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:24:08 (2069188): wrapper (7.7.26015): starting
18:24:08 (2069188): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 18:24:08] Arguments: --nthreads 8
[2025-07-27 18:24:08] Threads: 8
[2025-07-27 18:24:08] Checking for CVMFS
[2025-07-27 18:24:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 18:24:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 18:24:09] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 18:24:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 18:24:09] 2.13.1.0 704839 14718 154532 148827 1 196 32376331 40960000 10364 16776704 0 44707369 99.892 17316621 42285 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 18:24:09] CVMFS is ok
[2025-07-27 18:24:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 18:24:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 18:24:09] Further information can be found at the LHC@home message board.
[2025-07-27 18:24:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 18:24:09] Checking for apptainer binary...
[2025-07-27 18:24:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 18:24:09] Running /usr/bin/apptainer --version
[2025-07-27 18:24:09] apptainer version 1.4.1-1.el9
[2025-07-27 18:24:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 18:24:09] c-212-4.aglt2.org
[2025-07-27 18:24:09] apptainer works
[2025-07-27 18:24:09] Set ATHENA_PROC_NUMBER=8
[2025-07-27 18:24:09] Set ATHENA_CORE_NUMBER=8
[2025-07-27 18:24:09] Starting ATLAS job with PandaID=6747548546
[2025-07-27 18:24:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 19:48:11]  *** The last 200 lines of the pilot log: ***
[2025-07-27 19:48:11]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 19:48:11]  replicas=None
[2025-07-27 19:48:11]  scope=mc23_13p6TeV
[2025-07-27 19:48:11]  status=None
[2025-07-27 19:48:11]  status_code=0
[2025-07-27 19:48:11]  storage_token=
[2025-07-27 19:48:11]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747548546/log.45743349._052615.job.log.tgz.1
[2025-07-27 19:48:11]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/77/4f/log.45743349._052615.job.log.tgz.1
[2025-07-27 19:48:11]  workdir=None
[2025-07-27 19:48:11] ]
[2025-07-27 19:48:11] 2025-07-27 23:47:30,629 | INFO     | transferring file log.45743349._052615.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747548546/log.45743349._052615.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 19:48:11] 2025-07-27 23:47:30,629 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747548546/log.45743349._052615.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._052615.job
[2025-07-27 19:48:11] 2025-07-27 23:47:30,652 | INFO     | adding to output.list: log.45743349._052615.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/77/4f/log.45743349._052615.job.log.tg
[2025-07-27 19:48:11] 2025-07-27 23:47:30,653 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 19:48:11] 2025-07-27 23:47:30,653 | INFO     | summary of transferred files:
[2025-07-27 19:48:11] 2025-07-27 23:47:30,653 | INFO     |  -- lfn=log.45743349._052615.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 19:48:11] 2025-07-27 23:47:30,653 | INFO     | stage-out finished correctly
[2025-07-27 19:48:11] 2025-07-27 23:47:32,765 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 19:48:11] 2025-07-27 23:47:32,854 | WARNING  | process 2079257 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 19:48:11] 2025-07-27 23:47:32,854 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747548546/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 19:48:11] 2025-07-27 23:47:33,124 | INFO     | number of running child processes to parent process 2079257: 1
[2025-07-27 19:48:11] 2025-07-27 23:47:33,124 | INFO     | maximum number of monitored processes: 6
[2025-07-27 19:48:11] 2025-07-27 23:47:34,953 | INFO     | job 6747548546 has state=finished
[2025-07-27 19:48:11] 2025-07-27 23:47:34,953 | INFO     | preparing for final server update for job 6747548546 in state='finished'
[2025-07-27 19:48:11] 2025-07-27 23:47:35,013 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-27 19:48:11] 2025-07-27 23:47:35,014 | INFO     | this job has now completed (state=finished)
[2025-07-27 19:48:11] 2025-07-27 23:47:35,014 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 19:48:11] 2025-07-27 23:47:35,014 | INFO     | log transfer has been attempted: DONE
[2025-07-27 19:48:11] 2025-07-27 23:47:35,014 | INFO     | job 6747548546 has finished - writing final server update
[2025-07-27 19:48:11] 2025-07-27 23:47:35,014 | INFO     | total number of processed events: 400 (read)
[2025-07-27 19:48:11] 2025-07-27 23:47:35,015 | INFO     | executing command: lscpu
[2025-07-27 19:48:11] 2025-07-27 23:47:35,076 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 19:48:11] 2025-07-27 23:47:35,627 | INFO     | monitor loop #365: job 0:6747548546 is in state 'finished'
[2025-07-27 19:48:11] 2025-07-27 23:47:35,628 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 19:48:11] 2025-07-27 23:47:38,131 | INFO     | monitor loop #366: job 0:6747548546 is in state 'finished'
[2025-07-27 19:48:11] 2025-07-27 23:47:38,131 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 19:48:11] 2025-07-27 23:47:38,955 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 19:48:11] 2025-07-27 23:47:38,961 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3298.59609375
[2025-07-27 19:48:11] 2025-07-27 23:47:38,975 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747548546/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 19:48:11] 2025-07-27 23:47:38,975 | INFO     | extracted standard info from prmon json
[2025-07-27 19:48:11] 2025-07-27 23:47:38,975 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 19:48:11] 2025-07-27 23:47:38,976 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 19:48:11] 2025-07-27 23:47:38,976 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 19:48:11] 2025-07-27 23:47:38,976 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 19:48:11] 2025-07-27 23:47:38,977 | INFO     | fitting pss+swap vs Time
[2025-07-27 19:48:11] 2025-07-27 23:47:38,978 | INFO     | sum of square deviations: 130793150.0
[2025-07-27 19:48:11] 2025-07-27 23:47:38,978 | INFO     | sum of deviations: -6667472691.000002
[2025-07-27 19:48:11] 2025-07-27 23:47:38,978 | INFO     | mean x: 1753657655.0
[2025-07-27 19:48:11] 2025-07-27 23:47:38,978 | INFO     | mean y: 2607355.4266666668
[2025-07-27 19:48:11] 2025-07-27 23:47:38,978 | INFO     | -- intersect: 89399219670.94627
[2025-07-27 19:48:11] 2025-07-27 23:47:38,978 | INFO     | intersect: 89399219670.94627
[2025-07-27 19:48:11] 2025-07-27 23:47:38,978 | INFO     | chi2: 0.013030268986200253
[2025-07-27 19:48:11] 2025-07-27 23:47:38,978 | INFO     | -- intersect: 89399219670.94627
[2025-07-27 19:48:11] 2025-07-27 23:47:38,979 | INFO     | current memory leak: -50.98 B/s (using 75 data points, chi2=0.01)
[2025-07-27 19:48:11] 2025-07-27 23:47:38,979 | INFO     | could have reported an average CPU frequency of 3293 MHz (6 samples)
[2025-07-27 19:48:11] 2025-07-27 23:47:38,979 | INFO     | ..............................
[2025-07-27 19:48:11] 2025-07-27 23:47:38,979 | INFO     | . Timing measurements:
[2025-07-27 19:48:11] 2025-07-27 23:47:38,979 | INFO     | . get job = 0 s
[2025-07-27 19:48:11] 2025-07-27 23:47:38,979 | INFO     | . initial setup = 2 s
[2025-07-27 19:48:11] 2025-07-27 23:47:38,979 | INFO     | . payload setup = 7 s
[2025-07-27 19:48:11] 2025-07-27 23:47:38,979 | INFO     | . stage-in = 0 s
[2025-07-27 19:48:11] 2025-07-27 23:47:38,979 | INFO     | . payload execution = 4958 s
[2025-07-27 19:48:11] 2025-07-27 23:47:38,979 | INFO     | . stage-out = 0 s
[2025-07-27 19:48:11] 2025-07-27 23:47:38,979 | INFO     | . log creation = 0 s
[2025-07-27 19:48:11] 2025-07-27 23:47:38,979 | INFO     | ..............................
[2025-07-27 19:48:11] 2025-07-27 23:47:39,203 | INFO     | 
[2025-07-27 19:48:11] 2025-07-27 23:47:39,203 | INFO     | job summary report
[2025-07-27 19:48:11] 2025-07-27 23:47:39,203 | INFO     | --------------------------------------------------
[2025-07-27 19:48:11] 2025-07-27 23:47:39,204 | INFO     | PanDA job id: 6747548546
[2025-07-27 19:48:11] 2025-07-27 23:47:39,204 | INFO     | task id: 45743349
[2025-07-27 19:48:11] 2025-07-27 23:47:39,204 | INFO     | errors: (none)
[2025-07-27 19:48:11] 2025-07-27 23:47:39,204 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 19:48:11] 2025-07-27 23:47:39,204 | INFO     | pilot state: finished 
[2025-07-27 19:48:11] 2025-07-27 23:47:39,204 | INFO     | transexitcode: 0
[2025-07-27 19:48:11] 2025-07-27 23:47:39,204 | INFO     | exeerrorcode: 0
[2025-07-27 19:48:11] 2025-07-27 23:47:39,204 | INFO     | exeerrordiag: 
[2025-07-27 19:48:11] 2025-07-27 23:47:39,204 | INFO     | exitcode: 0
[2025-07-27 19:48:11] 2025-07-27 23:47:39,204 | INFO     | exitmsg: OK
[2025-07-27 19:48:11] 2025-07-27 23:47:39,204 | INFO     | cpuconsumptiontime: 35111 s
[2025-07-27 19:48:11] 2025-07-27 23:47:39,204 | INFO     | nevents: 400
[2025-07-27 19:48:11] 2025-07-27 23:47:39,205 | INFO     | neventsw: 0
[2025-07-27 19:48:11] 2025-07-27 23:47:39,205 | INFO     | pid: 2079257
[2025-07-27 19:48:11] 2025-07-27 23:47:39,205 | INFO     | pgrp: 2079257
[2025-07-27 19:48:11] 2025-07-27 23:47:39,205 | INFO     | corecount: 8
[2025-07-27 19:48:11] 2025-07-27 23:47:39,205 | INFO     | event service: False
[2025-07-27 19:48:11] 2025-07-27 23:47:39,205 | INFO     | sizes: {0: 2397475, 6: 2397737, 11: 2397765, 4969: 2423934, 4970: 2423933, 4972: 2432987, 4974: 2433171, 4980: 2433365}
[2025-07-27 19:48:11] 2025-07-27 23:47:39,205 | INFO     | --------------------------------------------------
[2025-07-27 19:48:11] 2025-07-27 23:47:39,205 | INFO     | 
[2025-07-27 19:48:11] 2025-07-27 23:47:39,205 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 19:48:11] 2025-07-27 23:47:39,230 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 19:48:11] 2025-07-27 23:47:39,230 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 19:48:11] 2025-07-27 23:47:39,230 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 19:48:11] 2025-07-27 23:47:39,230 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 19:48:11] 2025-07-27 23:47:39,230 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 19:48:11] 2025-07-27 23:47:39,230 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 19:48:11] 2025-07-27 23:47:39,230 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 19:48:11] 2025-07-27 23:47:39,231 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 19:48:11] 2025-07-27 23:47:39,231 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 19:48:11] 2025-07-27 23:47:39,231 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 19:48:11] 2025-07-27 23:47:39,231 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 19:48:11] 2025-07-27 23:47:39,231 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 19:48:11] 2025-07-27 23:47:39,231 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 19:48:11] 2025-07-27 23:47:39,231 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 19:48:11] 2025-07-27 23:47:39,231 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 19:48:11] 2025-07-27 23:47:39,231 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 19:48:11] 2025-07-27 23:47:39,231 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 19:48:11] 2025-07-27 23:47:39,231 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 19:48:11] 2025-07-27 23:47:39,231 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 19:48:11] 2025-07-27 23:47:39,231 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 19:48:11] 2025-07-27 23:47:39,232 | INFO     | job 6747548546 has completed (purged errors)
[2025-07-27 19:48:11] 2025-07-27 23:47:39,232 | INFO     | overall cleanup function is called
[2025-07-27 19:48:11] 2025-07-27 23:47:40,240 | INFO     | --- collectZombieJob: --- 10, [2079257]
[2025-07-27 19:48:11] 2025-07-27 23:47:40,240 | INFO     | zombie collector waiting for pid 2079257
[2025-07-27 19:48:11] 2025-07-27 23:47:40,240 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 19:48:11] 2025-07-27 23:47:40,240 | INFO     | collected zombie processes
[2025-07-27 19:48:11] 2025-07-27 23:47:40,240 | INFO     | will attempt to kill all subprocesses of pid=2079257
[2025-07-27 19:48:11] 2025-07-27 23:47:40,613 | INFO     | process IDs to be killed: [2079257] (in reverse order)
[2025-07-27 19:48:11] 2025-07-27 23:47:40,707 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 19:48:11] 2025-07-27 23:47:40,707 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 19:48:11] 2025-07-27 23:47:40,718 | INFO     | did not find any defunct processes belonging to 2079257
[2025-07-27 19:48:11] 2025-07-27 23:47:40,726 | INFO     | did not find any defunct processes belonging to 2079257
[2025-07-27 19:48:11] 2025-07-27 23:47:40,726 | INFO     | ready for new job
[2025-07-27 19:48:11] 2025-07-27 23:47:40,726 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 19:48:11] 2025-07-27 23:47:40,728 | INFO     | ***************************************
[2025-07-27 19:48:11] 2025-07-27 23:47:40,729 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 19:48:11] 2025-07-27 23:47:40,729 | INFO     | ***************************************
[2025-07-27 19:48:11] 2025-07-27 23:47:40,729 | INFO     | 
[2025-07-27 19:48:11] 2025-07-27 23:47:40,733 | INFO     | architecture information:
[2025-07-27 19:48:11] 2025-07-27 23:47:40,734 | INFO     | executing command: cat /etc/os-release
[2025-07-27 19:48:11] 2025-07-27 23:47:40,752 | INFO     | cat /etc/os-release:
[2025-07-27 19:48:11] NAME="CentOS Linux"
[2025-07-27 19:48:11] VERSION="7 (Core)"
[2025-07-27 19:48:11] ID="centos"
[2025-07-27 19:48:11] ID_LIKE="rhel fedora"
[2025-07-27 19:48:11] VERSION_ID="7"
[2025-07-27 19:48:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 19:48:11] ANSI_COLOR="0;31"
[2025-07-27 19:48:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 19:48:11] HOME_URL="https://www.centos.org/"
[2025-07-27 19:48:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 19:48:11] 
[2025-07-27 19:48:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 19:48:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 19:48:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 19:48:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 19:48:11] 
[2025-07-27 19:48:11] 2025-07-27 23:47:40,752 | INFO     | ***************************************
[2025-07-27 19:48:11] 2025-07-27 23:47:41,255 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 19:48:11] 2025-07-27 23:47:41,284 | INFO     | sufficient remaining disk space (124800466944 B)
[2025-07-27 19:48:11] 2025-07-27 23:47:41,284 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 19:48:11] 2025-07-27 23:47:41,284 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 19:48:11] 2025-07-27 23:47:41,284 | INFO     | update_server=False
[2025-07-27 19:48:11] 2025-07-27 23:47:41,284 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 19:48:11] 2025-07-27 23:47:41,285 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 19:48:11] 2025-07-27 23:47:41,565 | INFO     | all payload control threads have been joined
[2025-07-27 19:48:11] 2025-07-27 23:47:41,639 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:48:11] 2025-07-27 23:47:41,639 | INFO     | aborting loop
[2025-07-27 19:48:11] 2025-07-27 23:47:41,707 | INFO     | all job control threads have been joined
[2025-07-27 19:48:11] 2025-07-27 23:47:42,169 | INFO     | all data control threads have been joined
[2025-07-27 19:48:11] 2025-07-27 23:47:42,290 | INFO     | [job] retrieve thread has finished
[2025-07-27 19:48:11] 2025-07-27 23:47:42,448 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 19:48:11] 2025-07-27 23:47:42,495 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 19:48:11] 2025-07-27 23:47:42,567 | INFO     | [payload] control thread has finished
[2025-07-27 19:48:11] 2025-07-27 23:47:42,580 | INFO     | [payload] validate_post thread has finished
[2025-07-27 19:48:11] 2025-07-27 23:47:42,644 | INFO     | [job] job monitor thread has finished
[2025-07-27 19:48:11] 2025-07-27 23:47:42,713 | INFO     | [job] control thread has finished
[2025-07-27 19:48:11] 2025-07-27 23:47:42,772 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 19:48:11] 2025-07-27 23:47:43,029 | INFO     | [data] copytool_in thread has finished
[2025-07-27 19:48:11] 2025-07-27 23:47:43,174 | INFO     | [data] control thread has finished
[2025-07-27 19:48:11] 2025-07-27 23:47:43,273 | INFO     | [job] validate thread has finished
[2025-07-27 19:48:11] 2025-07-27 23:47:43,290 | INFO     | [data] copytool_out thread has finished
[2025-07-27 19:48:11] 2025-07-27 23:47:43,341 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 19:48:11] 2025-07-27 23:47:43,639 | INFO     | [payload] failed_post thread has finished
[2025-07-27 19:48:11] 2025-07-27 23:47:44,058 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:48:11] 2025-07-27 23:47:45,064 | INFO     | [job] queue monitor thread has finished
[2025-07-27 19:48:11] 2025-07-27 23:47:47,345 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 19:48:11] 2025-07-27 23:47:51,972 | INFO     | job.realtimelogging is not enabled
[2025-07-27 19:48:11] 2025-07-27 23:47:52,978 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 19:48:11] 2025-07-27 23:47:54,321 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140082240231232)>', '<ExcThread(monitor, started 140081230771968)>']
[2025-07-27 19:48:11] 2025-07-27 23:47:59,346 | INFO     | all workflow threads have been joined
[2025-07-27 19:48:11] 2025-07-27 23:47:59,346 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 19:48:11] 2025-07-27 23:47:59,346 | INFO     | traces error code: 0
[2025-07-27 19:48:11] 2025-07-27 23:47:59,346 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 19:48:11] 2025-07-27 23:48:10,704 | INFO     | PID=2072869 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 19:48:11] 2025-07-27 23:48:10,706 | INFO     | .. there are 14 such processes running
[2025-07-27 19:48:11] 2025-07-27 23:48:10,706 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 19:48:11] 2025-07-27 23:48:10,706 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 19:48:11] 2025-07-27 23:48:10,706 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 19:48:11] 2025-07-27 23:48:10,706 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 19:48:11] 2025-07-27 23:48:10,706 | INFO     | [monitor] control thread has ended
[2025-07-27 19:48:11] 2025-07-27 23:48:10,804 [wrapper] ==== pilot stdout END ====
[2025-07-27 19:48:11] 2025-07-27 23:48:10,808 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 19:48:11] 2025-07-27 23:48:10,813 [wrapper] pilotpid: 2072869
[2025-07-27 19:48:11] 2025-07-27 23:48:10,817 [wrapper] Pilot exit status: 0
[2025-07-27 19:48:11] 2025-07-27 23:48:10,837 [wrapper] pandaids: 6747548546
[2025-07-27 19:48:11] 2025-07-27 23:48:10,925 [wrapper] cleanup supervisor_pilot 2355836 2072870
[2025-07-27 19:48:11] 2025-07-27 23:48:10,933 [wrapper] Test setup, not cleaning
[2025-07-27 19:48:11] 2025-07-27 23:48:10,938 [wrapper] apfmon messages muted
[2025-07-27 19:48:11] 2025-07-27 23:48:10,944 [wrapper] ==== wrapper stdout END ====
[2025-07-27 19:48:11] 2025-07-27 23:48:10,951 [wrapper] ==== wrapper stderr END ====
[2025-07-27 19:48:11]  *** Error codes and diagnostics ***
[2025-07-27 19:48:11]     "exeErrorCode": 0,
[2025-07-27 19:48:11]     "exeErrorDiag": "",
[2025-07-27 19:48:11]     "pilotErrorCode": 0,
[2025-07-27 19:48:11]     "pilotErrorDiag": "",
[2025-07-27 19:48:11]  *** Listing of results directory ***
[2025-07-27 19:48:11] total 435140
[2025-07-27 19:48:11] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 12:55 pilot3.tar.gz
[2025-07-27 19:48:11] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 12:59 queuedata.json
[2025-07-27 19:48:11] -rwx------. 1 boincer umatlas     36292 Jul 27 12:59 runpilot2-wrapper.sh
[2025-07-27 19:48:11] -rw-r--r--. 1 boincer umatlas       100 Jul 27 18:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 19:48:11] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 18:24 run_atlas
[2025-07-27 19:48:11] -rw-r--r--. 1 boincer umatlas       105 Jul 27 18:24 job.xml
[2025-07-27 19:48:11] -rw-r--r--. 2 boincer umatlas 230365557 Jul 27 18:24 EVNT.45743347._002814.pool.root.1
[2025-07-27 19:48:11] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 18:24 start_atlas.sh
[2025-07-27 19:48:11] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 18:24 shared
[2025-07-27 19:48:11] -rw-r--r--. 2 boincer umatlas    542892 Jul 27 18:24 input.tar.gz
[2025-07-27 19:48:11] -rw-r--r--. 1 boincer umatlas         0 Jul 27 18:24 boinc_lockfile
[2025-07-27 19:48:11] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 18:24 pandaJob.out
[2025-07-27 19:48:11] -rw-------. 1 boincer umatlas    980109 Jul 27 18:24 agis_schedconf.cvmfs.json
[2025-07-27 19:48:11] -rw-------. 1 boincer umatlas   1593052 Jul 27 18:24 agis_ddmendpoints.agis.ALL.json
[2025-07-27 19:48:11] drwx------. 4 boincer umatlas      4096 Jul 27 18:24 pilot3
[2025-07-27 19:48:11] -rw-------. 1 boincer umatlas 209742964 Jul 27 19:47 HITS.45743349._052615.pool.root.1
[2025-07-27 19:48:11] -rw-r--r--. 1 boincer umatlas       529 Jul 27 19:47 boinc_task_state.xml
[2025-07-27 19:48:11] -rw-------. 1 boincer umatlas        95 Jul 27 19:47 pilot_heartbeat.json
[2025-07-27 19:48:11] -rw-------. 1 boincer umatlas      1025 Jul 27 19:47 memory_monitor_summary.json
[2025-07-27 19:48:11] -rw-------. 1 boincer umatlas    314454 Jul 27 19:47 log.45743349._052615.job.log.tgz.1
[2025-07-27 19:48:11] -rw-------. 1 boincer umatlas      7765 Jul 27 19:47 heartbeat.json
[2025-07-27 19:48:11] -rw-r--r--. 1 boincer umatlas      6945 Jul 27 19:47 init_data.xml
[2025-07-27 19:48:11] -rw-r--r--. 1 boincer umatlas        27 Jul 27 19:48 wrapper_checkpoint.txt
[2025-07-27 19:48:11] -rw-------. 1 boincer umatlas       823 Jul 27 19:48 pilotlog.txt
[2025-07-27 19:48:11] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 19:48 boinc_mmap_file
[2025-07-27 19:48:11] -rw-------. 1 boincer umatlas    486940 Jul 27 19:48 log.45743349._052615.job.log.1
[2025-07-27 19:48:11] -rw-------. 1 boincer umatlas       357 Jul 27 19:48 output.list
[2025-07-27 19:48:11] -rw-r--r--. 1 boincer umatlas       620 Jul 27 19:48 runtime_log
[2025-07-27 19:48:11] -rw-------. 1 boincer umatlas    819200 Jul 27 19:48 result.tar.gz
[2025-07-27 19:48:11] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 19:48 runtime_log.err
[2025-07-27 19:48:11] -rw-------. 1 boincer umatlas       650 Jul 27 19:48 NPyLDmRtJ07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQvVLDmvlxzNm.diag
[2025-07-27 19:48:11] -rw-r--r--. 1 boincer umatlas     21921 Jul 27 19:48 stderr.txt
[2025-07-27 19:48:11] HITS file was successfully produced:
[2025-07-27 19:48:11] -rw-------. 1 boincer umatlas 209742964 Jul 27 19:47 shared/HITS.pool.root.1
[2025-07-27 19:48:11]  *** Contents of shared directory: ***
[2025-07-27 19:48:11] total 431152
[2025-07-27 19:48:11] -rw-r--r--. 2 boincer umatlas 230365557 Jul 27 18:24 ATLAS.root_0
[2025-07-27 19:48:11] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 18:24 start_atlas.sh
[2025-07-27 19:48:11] -rw-r--r--. 2 boincer umatlas    542892 Jul 27 18:24 input.tar.gz
[2025-07-27 19:48:11] -rw-------. 1 boincer umatlas 209742964 Jul 27 19:47 HITS.pool.root.1
[2025-07-27 19:48:11] -rw-------. 1 boincer umatlas    819200 Jul 27 19:48 result.tar.gz
19:48:12 (2069188): run_atlas exited; CPU time 35230.093919
19:48:12 (2069188): called boinc_finish(0)

</stderr_txt>
]]>

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