Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:22:26 (2787331): wrapper (7.7.26015): starting
18:22:26 (2787331): wrapper: running run_atlas (--nthreads 10)
[2025-07-27 18:22:26] Arguments: --nthreads 10
[2025-07-27 18:22:26] Threads: 10
[2025-07-27 18:22:26] Checking for CVMFS
[2025-07-27 18:22:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 18:22:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 18:22:26] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 18:22:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 18:22:26] 2.12.6.0 1588522 18974 443056 148827 1 73 28294912 32935936 19230 16776704 1 102671270 99.622 112246150 17841 http://cvmfs-s1.hpc.swin.edu.au:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 18:22:26] CVMFS is ok
[2025-07-27 18:22:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 18:22:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 18:22:26] Further information can be found at the LHC@home message board.
[2025-07-27 18:22:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 18:22:26] Checking for apptainer binary...
[2025-07-27 18:22:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 18:22:26] Running /usr/bin/apptainer --version
[2025-07-27 18:22:27] apptainer version 1.4.1-1.el9
[2025-07-27 18:22:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 18:22:27] c-3-40.aglt2.org
[2025-07-27 18:22:27] apptainer works
[2025-07-27 18:22:27] Set ATHENA_PROC_NUMBER=10
[2025-07-27 18:22:27] Set ATHENA_CORE_NUMBER=10
[2025-07-27 18:22:27] Starting ATLAS job with PandaID=6747548824
[2025-07-27 18:22:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 20:01:15]  *** The last 200 lines of the pilot log: ***
[2025-07-27 20:01:15]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 20:01:15]  replicas=None
[2025-07-27 20:01:15]  scope=mc23_13p6TeV
[2025-07-27 20:01:15]  status=None
[2025-07-27 20:01:15]  status_code=0
[2025-07-27 20:01:15]  storage_token=
[2025-07-27 20:01:15]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747548824/log.45743349._052691.job.log.tgz.1
[2025-07-27 20:01:15]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/17/e1/log.45743349._052691.job.log.tgz.1
[2025-07-27 20:01:15]  workdir=None
[2025-07-27 20:01:15] ]
[2025-07-27 20:01:15] 2025-07-28 00:00:34,060 | INFO     | monitor loop #412: job 0:6747548824 is in state 'stageout'
[2025-07-27 20:01:15] 2025-07-28 00:00:34,077 | WARNING  | aborting job monitor tasks since payload process 2805228 is not running
[2025-07-27 20:01:15] 2025-07-28 00:00:34,086 | INFO     | transferring file log.45743349._052691.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747548824/log.45743349._052691.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 20:01:15] 2025-07-28 00:00:34,086 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747548824/log.45743349._052691.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._052691.job
[2025-07-27 20:01:15] 2025-07-28 00:00:34,110 | INFO     | adding to output.list: log.45743349._052691.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/17/e1/log.45743349._052691.job.log.tg
[2025-07-27 20:01:15] 2025-07-28 00:00:34,111 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 20:01:15] 2025-07-28 00:00:34,111 | INFO     | summary of transferred files:
[2025-07-27 20:01:15] 2025-07-28 00:00:34,111 | INFO     |  -- lfn=log.45743349._052691.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 20:01:15] 2025-07-28 00:00:34,111 | INFO     | stage-out finished correctly
[2025-07-27 20:01:15] 2025-07-28 00:00:34,932 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 20:01:15] 2025-07-28 00:00:36,588 | INFO     | monitor loop #413: job 0:6747548824 is in state 'finished'
[2025-07-27 20:01:15] 2025-07-28 00:00:36,589 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:01:15] 2025-07-28 00:00:36,663 | INFO     | job 6747548824 has state=finished
[2025-07-27 20:01:15] 2025-07-28 00:00:36,664 | INFO     | preparing for final server update for job 6747548824 in state='finished'
[2025-07-27 20:01:15] 2025-07-28 00:00:36,664 | INFO     | this job has now completed (state=finished)
[2025-07-27 20:01:15] 2025-07-28 00:00:36,664 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 20:01:15] 2025-07-28 00:00:36,664 | INFO     | log transfer has been attempted: DONE
[2025-07-27 20:01:15] 2025-07-28 00:00:36,665 | INFO     | job 6747548824 has finished - writing final server update
[2025-07-27 20:01:15] 2025-07-28 00:00:36,665 | INFO     | total number of processed events: 400 (read)
[2025-07-27 20:01:15] 2025-07-28 00:00:36,667 | INFO     | executing command: lscpu
[2025-07-27 20:01:15] 2025-07-28 00:00:36,738 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 20:01:15] 2025-07-28 00:00:39,092 | INFO     | monitor loop #414: job 0:6747548824 is in state 'finished'
[2025-07-27 20:01:15] 2025-07-28 00:00:39,096 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:01:15] 2025-07-28 00:00:41,599 | INFO     | monitor loop #415: job 0:6747548824 is in state 'finished'
[2025-07-27 20:01:15] 2025-07-28 00:00:41,599 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:01:15] 2025-07-28 00:00:42,124 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 20:01:15] 2025-07-28 00:00:42,167 | INFO     | found 40 cores (20 cores per socket, 2 sockets) HT, CPU MHz: 2791.9610624999996
[2025-07-27 20:01:15] 2025-07-28 00:00:42,210 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747548824/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 20:01:15] 2025-07-28 00:00:42,211 | INFO     | extracted standard info from prmon json
[2025-07-27 20:01:15] 2025-07-28 00:00:42,212 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 20:01:15] 2025-07-28 00:00:42,212 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 20:01:15] 2025-07-28 00:00:42,212 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 20:01:15] 2025-07-28 00:00:42,212 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 20:01:15] 2025-07-28 00:00:42,215 | INFO     | fitting pss+swap vs Time
[2025-07-27 20:01:15] 2025-07-28 00:00:42,215 | INFO     | sum of square deviations: 218567392.98876375
[2025-07-27 20:01:15] 2025-07-28 00:00:42,215 | INFO     | sum of deviations: -20364527980.13484
[2025-07-27 20:01:15] 2025-07-28 00:00:42,215 | INFO     | mean x: 1753657987.011236
[2025-07-27 20:01:15] 2025-07-28 00:00:42,216 | INFO     | mean y: 2470582.1348314607
[2025-07-27 20:01:15] 2025-07-28 00:00:42,216 | INFO     | -- intersect: 163395631180.03415
[2025-07-27 20:01:15] 2025-07-28 00:00:42,216 | INFO     | intersect: 163395631180.03415
[2025-07-27 20:01:15] 2025-07-28 00:00:42,216 | INFO     | chi2: 0.23706270527586096
[2025-07-27 20:01:15] 2025-07-28 00:00:42,216 | INFO     | -- intersect: 163395631180.03415
[2025-07-27 20:01:15] 2025-07-28 00:00:42,216 | INFO     | current memory leak: -93.17 B/s (using 89 data points, chi2=0.24)
[2025-07-27 20:01:15] 2025-07-28 00:00:42,217 | INFO     | could have reported an average CPU frequency of 2668 MHz (7 samples)
[2025-07-27 20:01:15] 2025-07-28 00:00:42,217 | INFO     | ..............................
[2025-07-27 20:01:15] 2025-07-28 00:00:42,218 | INFO     | . Timing measurements:
[2025-07-27 20:01:15] 2025-07-28 00:00:42,218 | INFO     | . get job = 0 s
[2025-07-27 20:01:15] 2025-07-28 00:00:42,218 | INFO     | . initial setup = 3 s
[2025-07-27 20:01:15] 2025-07-28 00:00:42,218 | INFO     | . payload setup = 10 s
[2025-07-27 20:01:15] 2025-07-28 00:00:42,219 | INFO     | . stage-in = 0 s
[2025-07-27 20:01:15] 2025-07-28 00:00:42,219 | INFO     | . payload execution = 5838 s
[2025-07-27 20:01:15] 2025-07-28 00:00:42,219 | INFO     | . stage-out = 0 s
[2025-07-27 20:01:15] 2025-07-28 00:00:42,219 | INFO     | . log creation = 0 s
[2025-07-27 20:01:15] 2025-07-28 00:00:42,219 | INFO     | ..............................
[2025-07-27 20:01:15] 2025-07-28 00:00:42,314 | INFO     | 
[2025-07-27 20:01:15] 2025-07-28 00:00:42,314 | INFO     | job summary report
[2025-07-27 20:01:15] 2025-07-28 00:00:42,314 | INFO     | --------------------------------------------------
[2025-07-27 20:01:15] 2025-07-28 00:00:42,314 | INFO     | PanDA job id: 6747548824
[2025-07-27 20:01:15] 2025-07-28 00:00:42,314 | INFO     | task id: 45743349
[2025-07-27 20:01:15] 2025-07-28 00:00:42,315 | INFO     | errors: (none)
[2025-07-27 20:01:15] 2025-07-28 00:00:42,315 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 20:01:15] 2025-07-28 00:00:42,315 | INFO     | pilot state: finished 
[2025-07-27 20:01:15] 2025-07-28 00:00:42,315 | INFO     | transexitcode: 0
[2025-07-27 20:01:15] 2025-07-28 00:00:42,315 | INFO     | exeerrorcode: 0
[2025-07-27 20:01:15] 2025-07-28 00:00:42,315 | INFO     | exeerrordiag: 
[2025-07-27 20:01:15] 2025-07-28 00:00:42,317 | INFO     | exitcode: 0
[2025-07-27 20:01:15] 2025-07-28 00:00:42,317 | INFO     | exitmsg: OK
[2025-07-27 20:01:15] 2025-07-28 00:00:42,318 | INFO     | cpuconsumptiontime: 49535 s
[2025-07-27 20:01:15] 2025-07-28 00:00:42,318 | INFO     | nevents: 400
[2025-07-27 20:01:15] 2025-07-28 00:00:42,318 | INFO     | neventsw: 0
[2025-07-27 20:01:15] 2025-07-28 00:00:42,318 | INFO     | pid: 2805228
[2025-07-27 20:01:15] 2025-07-28 00:00:42,318 | INFO     | pgrp: 2805228
[2025-07-27 20:01:15] 2025-07-28 00:00:42,318 | INFO     | corecount: 10
[2025-07-27 20:01:15] 2025-07-28 00:00:42,318 | INFO     | event service: False
[2025-07-27 20:01:15] 2025-07-28 00:00:42,318 | INFO     | sizes: {0: 2397304, 1: 2397503, 8: 2397765, 11: 2397793, 5851: 2424548, 5853: 2433546, 5854: 2433730, 5861: 2433924}
[2025-07-27 20:01:15] 2025-07-28 00:00:42,318 | INFO     | --------------------------------------------------
[2025-07-27 20:01:15] 2025-07-28 00:00:42,319 | INFO     | 
[2025-07-27 20:01:15] 2025-07-28 00:00:42,319 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 20:01:15] 2025-07-28 00:00:42,342 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 20:01:15] 2025-07-28 00:00:42,342 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 20:01:15] 2025-07-28 00:00:42,342 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 20:01:15] 2025-07-28 00:00:42,343 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 20:01:15] 2025-07-28 00:00:42,343 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 20:01:15] 2025-07-28 00:00:42,343 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 20:01:15] 2025-07-28 00:00:42,343 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 20:01:15] 2025-07-28 00:00:42,343 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 20:01:15] 2025-07-28 00:00:42,343 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 20:01:15] 2025-07-28 00:00:42,343 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 20:01:15] 2025-07-28 00:00:42,343 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 20:01:15] 2025-07-28 00:00:42,343 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 20:01:15] 2025-07-28 00:00:42,343 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 20:01:15] 2025-07-28 00:00:42,343 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 20:01:15] 2025-07-28 00:00:42,344 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 20:01:15] 2025-07-28 00:00:42,344 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 20:01:15] 2025-07-28 00:00:42,344 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 20:01:15] 2025-07-28 00:00:42,344 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 20:01:15] 2025-07-28 00:00:42,344 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 20:01:15] 2025-07-28 00:00:42,344 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 20:01:15] 2025-07-28 00:00:42,345 | INFO     | job 6747548824 has completed (purged errors)
[2025-07-27 20:01:15] 2025-07-28 00:00:42,345 | INFO     | overall cleanup function is called
[2025-07-27 20:01:15] 2025-07-28 00:00:42,474 | INFO     | PID=2794644 has CPU usage=13.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-27 20:01:15] 2025-07-28 00:00:42,474 | INFO     | .. there are 24 such processes running
[2025-07-27 20:01:15] 2025-07-28 00:00:43,353 | INFO     | --- collectZombieJob: --- 10, [2805228]
[2025-07-27 20:01:15] 2025-07-28 00:00:43,353 | INFO     | zombie collector waiting for pid 2805228
[2025-07-27 20:01:15] 2025-07-28 00:00:43,353 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 20:01:15] 2025-07-28 00:00:43,354 | INFO     | collected zombie processes
[2025-07-27 20:01:15] 2025-07-28 00:00:43,354 | INFO     | will attempt to kill all subprocesses of pid=2805228
[2025-07-27 20:01:15] 2025-07-28 00:00:43,750 | INFO     | process IDs to be killed: [2805228] (in reverse order)
[2025-07-27 20:01:15] 2025-07-28 00:00:43,886 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 20:01:15] 2025-07-28 00:00:43,887 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 20:01:15] 2025-07-28 00:00:43,902 | INFO     | did not find any defunct processes belonging to 2805228
[2025-07-27 20:01:15] 2025-07-28 00:00:43,919 | INFO     | did not find any defunct processes belonging to 2805228
[2025-07-27 20:01:15] 2025-07-28 00:00:43,920 | INFO     | ready for new job
[2025-07-27 20:01:15] 2025-07-28 00:00:43,920 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 20:01:15] 2025-07-28 00:00:43,922 | INFO     | ***************************************
[2025-07-27 20:01:15] 2025-07-28 00:00:43,922 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 20:01:15] 2025-07-28 00:00:43,922 | INFO     | ***************************************
[2025-07-27 20:01:15] 2025-07-28 00:00:43,922 | INFO     | 
[2025-07-27 20:01:15] 2025-07-28 00:00:43,940 | INFO     | architecture information:
[2025-07-27 20:01:15] 2025-07-28 00:00:43,940 | INFO     | executing command: cat /etc/os-release
[2025-07-27 20:01:15] 2025-07-28 00:00:43,959 | INFO     | cat /etc/os-release:
[2025-07-27 20:01:15] NAME="CentOS Linux"
[2025-07-27 20:01:15] VERSION="7 (Core)"
[2025-07-27 20:01:15] ID="centos"
[2025-07-27 20:01:15] ID_LIKE="rhel fedora"
[2025-07-27 20:01:15] VERSION_ID="7"
[2025-07-27 20:01:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 20:01:15] ANSI_COLOR="0;31"
[2025-07-27 20:01:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 20:01:15] HOME_URL="https://www.centos.org/"
[2025-07-27 20:01:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 20:01:15] 
[2025-07-27 20:01:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 20:01:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 20:01:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 20:01:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 20:01:15] 
[2025-07-27 20:01:15] 2025-07-28 00:00:43,959 | INFO     | ***************************************
[2025-07-27 20:01:15] 2025-07-28 00:00:44,461 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 20:01:15] 2025-07-28 00:00:44,480 | INFO     | sufficient remaining disk space (76144443392 B)
[2025-07-27 20:01:15] 2025-07-28 00:00:44,480 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 20:01:15] 2025-07-28 00:00:44,480 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 20:01:15] 2025-07-28 00:00:44,481 | INFO     | update_server=False
[2025-07-27 20:01:15] 2025-07-28 00:00:44,481 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 20:01:15] 2025-07-28 00:00:44,552 | INFO     | all job control threads have been joined
[2025-07-27 20:01:15] 2025-07-28 00:00:44,720 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 20:01:15] 2025-07-28 00:00:45,107 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 20:01:15] 2025-07-28 00:00:45,108 | INFO     | aborting loop
[2025-07-27 20:01:15] 2025-07-28 00:00:45,159 | INFO     | all data control threads have been joined
[2025-07-27 20:01:15] 2025-07-28 00:00:45,431 | INFO     | all payload control threads have been joined
[2025-07-27 20:01:15] 2025-07-28 00:00:45,485 | INFO     | [job] retrieve thread has finished
[2025-07-27 20:01:15] 2025-07-28 00:00:45,504 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 20:01:15] 2025-07-28 00:00:45,557 | INFO     | [job] control thread has finished
[2025-07-27 20:01:15] 2025-07-28 00:00:45,810 | INFO     | [job] validate thread has finished
[2025-07-27 20:01:15] 2025-07-28 00:00:45,856 | INFO     | [data] copytool_in thread has finished
[2025-07-27 20:01:15] 2025-07-28 00:00:45,874 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 20:01:15] 2025-07-28 00:00:46,018 | INFO     | [payload] validate_post thread has finished
[2025-07-27 20:01:15] 2025-07-28 00:00:46,112 | INFO     | [job] job monitor thread has finished
[2025-07-27 20:01:15] 2025-07-28 00:00:46,165 | INFO     | [data] control thread has finished
[2025-07-27 20:01:15] 2025-07-28 00:00:46,394 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 20:01:15] 2025-07-28 00:00:46,436 | INFO     | [payload] control thread has finished
[2025-07-27 20:01:15] 2025-07-28 00:00:46,531 | INFO     | [payload] failed_post thread has finished
[2025-07-27 20:01:15] 2025-07-28 00:00:46,584 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 20:01:15] 2025-07-28 00:00:46,622 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 20:01:15] 2025-07-28 00:00:46,725 | INFO     | [data] copytool_out thread has finished
[2025-07-27 20:01:15] 2025-07-28 00:00:47,323 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 20:01:15] 2025-07-28 00:00:48,328 | INFO     | [job] queue monitor thread has finished
[2025-07-27 20:01:15] 2025-07-28 00:00:49,510 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 20:01:15] 2025-07-28 00:00:51,551 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140412161193792)>', '<ExcThread(monitor, started 140411532207872)>']
[2025-07-27 20:01:15] 2025-07-28 00:00:56,576 | INFO     | all workflow threads have been joined
[2025-07-27 20:01:15] 2025-07-28 00:00:56,577 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 20:01:15] 2025-07-28 00:00:56,577 | INFO     | traces error code: 0
[2025-07-27 20:01:15] 2025-07-28 00:00:56,577 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 20:01:15] 2025-07-28 00:01:15,015 | INFO     | PID=2794644 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 20:01:15] 2025-07-28 00:01:15,016 | INFO     | .. there are 24 such processes running
[2025-07-27 20:01:15] 2025-07-28 00:01:15,016 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 20:01:15] 2025-07-28 00:01:15,016 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 20:01:15] 2025-07-28 00:01:15,017 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 20:01:15] 2025-07-28 00:01:15,017 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 20:01:15] 2025-07-28 00:01:15,017 | INFO     | [monitor] control thread has ended
[2025-07-27 20:01:15] 2025-07-28 00:01:15,190 [wrapper] ==== pilot stdout END ====
[2025-07-27 20:01:15] 2025-07-28 00:01:15,194 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 20:01:15] 2025-07-28 00:01:15,197 [wrapper] pilotpid: 2794644
[2025-07-27 20:01:15] 2025-07-28 00:01:15,201 [wrapper] Pilot exit status: 0
[2025-07-27 20:01:15] 2025-07-28 00:01:15,221 [wrapper] pandaids: 6747548824
[2025-07-27 20:01:15] 2025-07-28 00:01:15,310 [wrapper] cleanup supervisor_pilot 3153729 2794645
[2025-07-27 20:01:15] 2025-07-28 00:01:15,315 [wrapper] Test setup, not cleaning
[2025-07-27 20:01:15] 2025-07-28 00:01:15,319 [wrapper] apfmon messages muted
[2025-07-27 20:01:15] 2025-07-28 00:01:15,325 [wrapper] ==== wrapper stdout END ====
[2025-07-27 20:01:15] 2025-07-28 00:01:15,328 [wrapper] ==== wrapper stderr END ====
[2025-07-27 20:01:15]  *** Error codes and diagnostics ***
[2025-07-27 20:01:15]     "exeErrorCode": 0,
[2025-07-27 20:01:15]     "exeErrorDiag": "",
[2025-07-27 20:01:15]     "pilotErrorCode": 0,
[2025-07-27 20:01:15]     "pilotErrorDiag": "",
[2025-07-27 20:01:15]  *** Listing of results directory ***
[2025-07-27 20:01:15] total 441108
[2025-07-27 20:01:15] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 12:55 pilot3.tar.gz
[2025-07-27 20:01:15] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 13:03 queuedata.json
[2025-07-27 20:01:15] -rwx------. 1 boincer umatlas     36292 Jul 27 13:04 runpilot2-wrapper.sh
[2025-07-27 20:01:15] -rw-r--r--. 1 boincer umatlas       100 Jul 27 18:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 20:01:15] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 18:22 run_atlas
[2025-07-27 20:01:15] -rw-r--r--. 1 boincer umatlas       105 Jul 27 18:22 job.xml
[2025-07-27 20:01:15] -rw-r--r--. 2 boincer umatlas 229483644 Jul 27 18:22 EVNT.45743347._002817.pool.root.1
[2025-07-27 20:01:15] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 18:22 start_atlas.sh
[2025-07-27 20:01:15] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 18:22 shared
[2025-07-27 20:01:15] -rw-r--r--. 2 boincer umatlas    542896 Jul 27 18:22 input.tar.gz
[2025-07-27 20:01:15] -rw-r--r--. 1 boincer umatlas         0 Jul 27 18:22 boinc_lockfile
[2025-07-27 20:01:15] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 18:22 pandaJob.out
[2025-07-27 20:01:15] -rw-------. 1 boincer umatlas    980109 Jul 27 18:22 agis_schedconf.cvmfs.json
[2025-07-27 20:01:15] -rw-------. 1 boincer umatlas   1593052 Jul 27 18:22 agis_ddmendpoints.agis.ALL.json
[2025-07-27 20:01:15] drwx------. 4 boincer umatlas      4096 Jul 27 18:22 pilot3
[2025-07-27 20:01:15] -rw-r--r--. 1 boincer umatlas      6840 Jul 27 19:57 init_data.xml
[2025-07-27 20:01:15] -rw-r--r--. 1 boincer umatlas       530 Jul 27 19:59 boinc_task_state.xml
[2025-07-27 20:01:15] -rw-------. 1 boincer umatlas 216506776 Jul 27 19:59 HITS.45743349._052691.pool.root.1
[2025-07-27 20:01:15] -rw-------. 1 boincer umatlas      1038 Jul 27 20:00 memory_monitor_summary.json
[2025-07-27 20:01:15] -rw-------. 1 boincer umatlas    356021 Jul 27 20:00 log.45743349._052691.job.log.tgz.1
[2025-07-27 20:01:15] -rw-------. 1 boincer umatlas      7818 Jul 27 20:00 heartbeat.json
[2025-07-27 20:01:15] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 20:01 boinc_mmap_file
[2025-07-27 20:01:15] -rw-r--r--. 1 boincer umatlas        27 Jul 27 20:01 wrapper_checkpoint.txt
[2025-07-27 20:01:15] -rw-------. 1 boincer umatlas       823 Jul 27 20:01 pilotlog.txt
[2025-07-27 20:01:15] -rw-------. 1 boincer umatlas        95 Jul 27 20:01 pilot_heartbeat.json
[2025-07-27 20:01:15] -rw-------. 1 boincer umatlas    558153 Jul 27 20:01 log.45743349._052691.job.log.1
[2025-07-27 20:01:15] -rw-------. 1 boincer umatlas       357 Jul 27 20:01 output.list
[2025-07-27 20:01:15] -rw-r--r--. 1 boincer umatlas       620 Jul 27 20:01 runtime_log
[2025-07-27 20:01:15] -rw-------. 1 boincer umatlas    931840 Jul 27 20:01 result.tar.gz
[2025-07-27 20:01:15] -rw-r--r--. 1 boincer umatlas      8652 Jul 27 20:01 runtime_log.err
[2025-07-27 20:01:15] -rw-------. 1 boincer umatlas       650 Jul 27 20:01 pEoNDmYyJ07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmNwVLDmtDJrCn.diag
[2025-07-27 20:01:15] -rw-r--r--. 1 boincer umatlas     22028 Jul 27 20:01 stderr.txt
[2025-07-27 20:01:15] HITS file was successfully produced:
[2025-07-27 20:01:15] -rw-------. 1 boincer umatlas 216506776 Jul 27 19:59 shared/HITS.pool.root.1
[2025-07-27 20:01:15]  *** Contents of shared directory: ***
[2025-07-27 20:01:15] total 437008
[2025-07-27 20:01:15] -rw-r--r--. 2 boincer umatlas 229483644 Jul 27 18:22 ATLAS.root_0
[2025-07-27 20:01:15] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 18:22 start_atlas.sh
[2025-07-27 20:01:15] -rw-r--r--. 2 boincer umatlas    542896 Jul 27 18:22 input.tar.gz
[2025-07-27 20:01:15] -rw-------. 1 boincer umatlas 216506776 Jul 27 19:59 HITS.pool.root.1
[2025-07-27 20:01:15] -rw-------. 1 boincer umatlas    931840 Jul 27 20:01 result.tar.gz
20:01:16 (2787331): run_atlas exited; CPU time 49751.783970
20:01:16 (2787331): called boinc_finish(0)

</stderr_txt>
]]>

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