Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:12:44 (3036938): wrapper (7.7.26015): starting
18:12:44 (3036938): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 18:12:44] Arguments: --nthreads 8
[2025-07-27 18:12:44] Threads: 8
[2025-07-27 18:12:44] Checking for CVMFS
[2025-07-27 18:12:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 18:12:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 18:12:45] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 18:12:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 18:12:45] 2.13.1.0 672044 14741 155356 148826 2 196 24567763 40960001 10408 16776704 0 46884830 99.886 26271870 43593 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 18:12:45] CVMFS is ok
[2025-07-27 18:12:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 18:12:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 18:12:45] Further information can be found at the LHC@home message board.
[2025-07-27 18:12:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 18:12:45] Checking for apptainer binary...
[2025-07-27 18:12:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 18:12:45] Running /usr/bin/apptainer --version
[2025-07-27 18:12:45] apptainer version 1.4.1-1.el9
[2025-07-27 18:12:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 18:12:45] c-212-3.aglt2.org
[2025-07-27 18:12:45] apptainer works
[2025-07-27 18:12:45] Set ATHENA_PROC_NUMBER=8
[2025-07-27 18:12:45] Set ATHENA_CORE_NUMBER=8
[2025-07-27 18:12:45] Starting ATLAS job with PandaID=6747548921
[2025-07-27 18:12:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 19:42:58]  *** The last 200 lines of the pilot log: ***
[2025-07-27 19:42:58]  scope=mc23_13p6TeV
[2025-07-27 19:42:58]  status=None
[2025-07-27 19:42:58]  status_code=0
[2025-07-27 19:42:58]  storage_token=
[2025-07-27 19:42:58]  surl=/tmp/boinchome/slots/8/PanDA_Pilot-6747548921/log.45743349._052788.job.log.tgz.1
[2025-07-27 19:42:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/02/00/log.45743349._052788.job.log.tgz.1
[2025-07-27 19:42:58]  workdir=None
[2025-07-27 19:42:58] ]
[2025-07-27 19:42:58] 2025-07-27 23:42:17,895 | INFO     | transferring file log.45743349._052788.job.log.tgz.1 from /tmp/boinchome/slots/8/PanDA_Pilot-6747548921/log.45743349._052788.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 19:42:58] 2025-07-27 23:42:17,895 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/8/PanDA_Pilot-6747548921/log.45743349._052788.job.log.tgz.1 /tmp/boinchome/slots/8/log.45743349._052788.job
[2025-07-27 19:42:58] 2025-07-27 23:42:17,927 | INFO     | adding to output.list: log.45743349._052788.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/02/00/log.45743349._052788.job.log.tg
[2025-07-27 19:42:58] 2025-07-27 23:42:17,928 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 19:42:58] 2025-07-27 23:42:17,928 | INFO     | summary of transferred files:
[2025-07-27 19:42:58] 2025-07-27 23:42:17,928 | INFO     |  -- lfn=log.45743349._052788.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 19:42:58] 2025-07-27 23:42:17,928 | INFO     | stage-out finished correctly
[2025-07-27 19:42:58] 2025-07-27 23:42:18,834 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 19:42:58] 2025-07-27 23:42:19,325 | INFO     | job 6747548921 has state=finished
[2025-07-27 19:42:58] 2025-07-27 23:42:19,329 | INFO     | preparing for final server update for job 6747548921 in state='finished'
[2025-07-27 19:42:58] 2025-07-27 23:42:19,329 | INFO     | this job has now completed (state=finished)
[2025-07-27 19:42:58] 2025-07-27 23:42:19,330 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 19:42:58] 2025-07-27 23:42:19,330 | INFO     | log transfer has been attempted: DONE
[2025-07-27 19:42:58] 2025-07-27 23:42:19,330 | INFO     | job 6747548921 has finished - writing final server update
[2025-07-27 19:42:58] 2025-07-27 23:42:19,330 | INFO     | total number of processed events: 400 (read)
[2025-07-27 19:42:58] 2025-07-27 23:42:19,340 | INFO     | executing command: lscpu
[2025-07-27 19:42:58] 2025-07-27 23:42:19,451 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 19:42:58] 2025-07-27 23:42:19,972 | INFO     | PID=3040520 has CPU usage=10.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-27 19:42:58] 2025-07-27 23:42:19,972 | INFO     | .. there are 14 such processes running
[2025-07-27 19:42:58] 2025-07-27 23:42:20,019 | WARNING  | process 3047179 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 19:42:58] 2025-07-27 23:42:20,019 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6747548921/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 19:42:58] 2025-07-27 23:42:20,560 | INFO     | number of running child processes to parent process 3047179: 1
[2025-07-27 19:42:58] 2025-07-27 23:42:20,561 | INFO     | maximum number of monitored processes: 6
[2025-07-27 19:42:58] 2025-07-27 23:42:23,067 | INFO     | monitor loop #390: job 0:6747548921 is in state 'finished'
[2025-07-27 19:42:58] 2025-07-27 23:42:23,067 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 19:42:58] 2025-07-27 23:42:25,574 | INFO     | monitor loop #391: job 0:6747548921 is in state 'finished'
[2025-07-27 19:42:58] 2025-07-27 23:42:25,574 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 19:42:58] 2025-07-27 23:42:25,947 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 19:42:58] 2025-07-27 23:42:25,956 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3274.2925937500004
[2025-07-27 19:42:58] 2025-07-27 23:42:25,978 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6747548921/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 19:42:58] 2025-07-27 23:42:25,978 | INFO     | extracted standard info from prmon json
[2025-07-27 19:42:58] 2025-07-27 23:42:25,979 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 19:42:58] 2025-07-27 23:42:25,979 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 19:42:58] 2025-07-27 23:42:25,979 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 19:42:58] 2025-07-27 23:42:25,979 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 19:42:58] 2025-07-27 23:42:25,982 | INFO     | fitting pss+swap vs Time
[2025-07-27 19:42:58] 2025-07-27 23:42:25,982 | INFO     | sum of square deviations: 164765880.0
[2025-07-27 19:42:58] 2025-07-27 23:42:25,982 | INFO     | sum of deviations: 649834403.0
[2025-07-27 19:42:58] 2025-07-27 23:42:25,982 | INFO     | mean x: 1753657146.0
[2025-07-27 19:42:58] 2025-07-27 23:42:25,983 | INFO     | mean y: 2549237.283950617
[2025-07-27 19:42:58] 2025-07-27 23:42:25,983 | INFO     | -- intersect: -6913850836.187534
[2025-07-27 19:42:58] 2025-07-27 23:42:25,983 | INFO     | intersect: -6913850836.187534
[2025-07-27 19:42:58] 2025-07-27 23:42:25,983 | INFO     | chi2: 0.020559331731953585
[2025-07-27 19:42:58] 2025-07-27 23:42:25,983 | INFO     | -- intersect: -6913850836.187534
[2025-07-27 19:42:58] 2025-07-27 23:42:25,983 | INFO     | current memory leak: 3.94 B/s (using 81 data points, chi2=0.02)
[2025-07-27 19:42:58] 2025-07-27 23:42:25,983 | INFO     | could have reported an average CPU frequency of 3276 MHz (6 samples)
[2025-07-27 19:42:58] 2025-07-27 23:42:25,984 | INFO     | ..............................
[2025-07-27 19:42:58] 2025-07-27 23:42:25,984 | INFO     | . Timing measurements:
[2025-07-27 19:42:58] 2025-07-27 23:42:25,984 | INFO     | . get job = 0 s
[2025-07-27 19:42:58] 2025-07-27 23:42:25,984 | INFO     | . initial setup = 2 s
[2025-07-27 19:42:58] 2025-07-27 23:42:25,984 | INFO     | . payload setup = 6 s
[2025-07-27 19:42:58] 2025-07-27 23:42:25,984 | INFO     | . stage-in = 0 s
[2025-07-27 19:42:58] 2025-07-27 23:42:25,984 | INFO     | . payload execution = 5336 s
[2025-07-27 19:42:58] 2025-07-27 23:42:25,984 | INFO     | . stage-out = 0 s
[2025-07-27 19:42:58] 2025-07-27 23:42:25,984 | INFO     | . log creation = 0 s
[2025-07-27 19:42:58] 2025-07-27 23:42:25,984 | INFO     | ..............................
[2025-07-27 19:42:58] 2025-07-27 23:42:26,071 | INFO     | 
[2025-07-27 19:42:58] 2025-07-27 23:42:26,072 | INFO     | job summary report
[2025-07-27 19:42:58] 2025-07-27 23:42:26,072 | INFO     | --------------------------------------------------
[2025-07-27 19:42:58] 2025-07-27 23:42:26,072 | INFO     | PanDA job id: 6747548921
[2025-07-27 19:42:58] 2025-07-27 23:42:26,072 | INFO     | task id: 45743349
[2025-07-27 19:42:58] 2025-07-27 23:42:26,072 | INFO     | errors: (none)
[2025-07-27 19:42:58] 2025-07-27 23:42:26,072 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 19:42:58] 2025-07-27 23:42:26,072 | INFO     | pilot state: finished 
[2025-07-27 19:42:58] 2025-07-27 23:42:26,072 | INFO     | transexitcode: 0
[2025-07-27 19:42:58] 2025-07-27 23:42:26,072 | INFO     | exeerrorcode: 0
[2025-07-27 19:42:58] 2025-07-27 23:42:26,072 | INFO     | exeerrordiag: 
[2025-07-27 19:42:58] 2025-07-27 23:42:26,072 | INFO     | exitcode: 0
[2025-07-27 19:42:58] 2025-07-27 23:42:26,072 | INFO     | exitmsg: OK
[2025-07-27 19:42:58] 2025-07-27 23:42:26,073 | INFO     | cpuconsumptiontime: 36646 s
[2025-07-27 19:42:58] 2025-07-27 23:42:26,073 | INFO     | nevents: 400
[2025-07-27 19:42:58] 2025-07-27 23:42:26,073 | INFO     | neventsw: 0
[2025-07-27 19:42:58] 2025-07-27 23:42:26,073 | INFO     | pid: 3047179
[2025-07-27 19:42:58] 2025-07-27 23:42:26,073 | INFO     | pgrp: 3047179
[2025-07-27 19:42:58] 2025-07-27 23:42:26,073 | INFO     | corecount: 8
[2025-07-27 19:42:58] 2025-07-27 23:42:26,073 | INFO     | event service: False
[2025-07-27 19:42:58] 2025-07-27 23:42:26,073 | INFO     | sizes: {0: 2397474, 5: 2397736, 11: 2397792, 5347: 2424340, 5348: 2433338, 5349: 2433394, 5356: 2433716}
[2025-07-27 19:42:58] 2025-07-27 23:42:26,073 | INFO     | --------------------------------------------------
[2025-07-27 19:42:58] 2025-07-27 23:42:26,073 | INFO     | 
[2025-07-27 19:42:58] 2025-07-27 23:42:26,073 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2025-07-27 19:42:58] 2025-07-27 23:42:26,098 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 19:42:58] 2025-07-27 23:42:26,098 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 19:42:58] 2025-07-27 23:42:26,098 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 19:42:58] 2025-07-27 23:42:26,099 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 19:42:58] 2025-07-27 23:42:26,099 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 19:42:58] 2025-07-27 23:42:26,101 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 19:42:58] 2025-07-27 23:42:26,101 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 19:42:58] 2025-07-27 23:42:26,101 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 19:42:58] 2025-07-27 23:42:26,101 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 19:42:58] 2025-07-27 23:42:26,101 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 19:42:58] 2025-07-27 23:42:26,101 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 19:42:58] 2025-07-27 23:42:26,101 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 19:42:58] 2025-07-27 23:42:26,101 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 19:42:58] 2025-07-27 23:42:26,101 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 19:42:58] 2025-07-27 23:42:26,101 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 19:42:58] 2025-07-27 23:42:26,102 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 19:42:58] 2025-07-27 23:42:26,102 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 19:42:58] 2025-07-27 23:42:26,102 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 19:42:58] 2025-07-27 23:42:26,102 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 19:42:58] 2025-07-27 23:42:26,102 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 19:42:58] 2025-07-27 23:42:26,102 | INFO     | job 6747548921 has completed (purged errors)
[2025-07-27 19:42:58] 2025-07-27 23:42:26,102 | INFO     | overall cleanup function is called
[2025-07-27 19:42:58] 2025-07-27 23:42:27,113 | INFO     | --- collectZombieJob: --- 10, [3047179]
[2025-07-27 19:42:58] 2025-07-27 23:42:27,113 | INFO     | zombie collector waiting for pid 3047179
[2025-07-27 19:42:58] 2025-07-27 23:42:27,113 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 19:42:58] 2025-07-27 23:42:27,113 | INFO     | collected zombie processes
[2025-07-27 19:42:58] 2025-07-27 23:42:27,113 | INFO     | will attempt to kill all subprocesses of pid=3047179
[2025-07-27 19:42:58] 2025-07-27 23:42:27,564 | INFO     | process IDs to be killed: [3047179] (in reverse order)
[2025-07-27 19:42:58] 2025-07-27 23:42:27,691 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 19:42:58] 2025-07-27 23:42:27,695 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 19:42:58] 2025-07-27 23:42:27,715 | INFO     | did not find any defunct processes belonging to 3047179
[2025-07-27 19:42:58] 2025-07-27 23:42:27,728 | INFO     | did not find any defunct processes belonging to 3047179
[2025-07-27 19:42:58] 2025-07-27 23:42:27,728 | INFO     | ready for new job
[2025-07-27 19:42:58] 2025-07-27 23:42:27,729 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 19:42:58] 2025-07-27 23:42:27,730 | INFO     | ***************************************
[2025-07-27 19:42:58] 2025-07-27 23:42:27,730 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 19:42:58] 2025-07-27 23:42:27,731 | INFO     | ***************************************
[2025-07-27 19:42:58] 2025-07-27 23:42:27,731 | INFO     | 
[2025-07-27 19:42:58] 2025-07-27 23:42:27,735 | INFO     | architecture information:
[2025-07-27 19:42:58] 2025-07-27 23:42:27,736 | INFO     | executing command: cat /etc/os-release
[2025-07-27 19:42:58] 2025-07-27 23:42:27,761 | INFO     | cat /etc/os-release:
[2025-07-27 19:42:58] NAME="CentOS Linux"
[2025-07-27 19:42:58] VERSION="7 (Core)"
[2025-07-27 19:42:58] ID="centos"
[2025-07-27 19:42:58] ID_LIKE="rhel fedora"
[2025-07-27 19:42:58] VERSION_ID="7"
[2025-07-27 19:42:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 19:42:58] ANSI_COLOR="0;31"
[2025-07-27 19:42:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 19:42:58] HOME_URL="https://www.centos.org/"
[2025-07-27 19:42:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 19:42:58] 
[2025-07-27 19:42:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 19:42:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 19:42:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 19:42:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 19:42:58] 
[2025-07-27 19:42:58] 2025-07-27 23:42:27,761 | INFO     | ***************************************
[2025-07-27 19:42:58] 2025-07-27 23:42:28,265 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-07-27 19:42:58] 2025-07-27 23:42:28,288 | INFO     | sufficient remaining disk space (124623257600 B)
[2025-07-27 19:42:58] 2025-07-27 23:42:28,289 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 19:42:58] 2025-07-27 23:42:28,289 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 19:42:58] 2025-07-27 23:42:28,289 | INFO     | update_server=False
[2025-07-27 19:42:58] 2025-07-27 23:42:28,289 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 19:42:58] 2025-07-27 23:42:28,548 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 19:42:58] 2025-07-27 23:42:29,004 | INFO     | all data control threads have been joined
[2025-07-27 19:42:58] 2025-07-27 23:42:29,084 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:42:58] 2025-07-27 23:42:29,085 | INFO     | aborting loop
[2025-07-27 19:42:58] 2025-07-27 23:42:29,295 | INFO     | [job] retrieve thread has finished
[2025-07-27 19:42:58] 2025-07-27 23:42:29,357 | INFO     | all job control threads have been joined
[2025-07-27 19:42:58] 2025-07-27 23:42:29,431 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 19:42:58] 2025-07-27 23:42:29,555 | INFO     | all payload control threads have been joined
[2025-07-27 19:42:58] 2025-07-27 23:42:29,600 | INFO     | [data] copytool_in thread has finished
[2025-07-27 19:42:58] 2025-07-27 23:42:29,715 | INFO     | [payload] failed_post thread has finished
[2025-07-27 19:42:58] 2025-07-27 23:42:29,803 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 19:42:58] 2025-07-27 23:42:30,009 | INFO     | [data] control thread has finished
[2025-07-27 19:42:58] 2025-07-27 23:42:30,091 | INFO     | [job] job monitor thread has finished
[2025-07-27 19:42:58] 2025-07-27 23:42:30,363 | INFO     | [job] control thread has finished
[2025-07-27 19:42:58] 2025-07-27 23:42:30,481 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 19:42:58] 2025-07-27 23:42:30,555 | INFO     | [data] copytool_out thread has finished
[2025-07-27 19:42:58] 2025-07-27 23:42:30,560 | INFO     | [payload] control thread has finished
[2025-07-27 19:42:58] 2025-07-27 23:42:30,706 | INFO     | [payload] validate_post thread has finished
[2025-07-27 19:42:58] 2025-07-27 23:42:30,707 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 19:42:58] 2025-07-27 23:42:30,721 | INFO     | [job] validate thread has finished
[2025-07-27 19:42:58] 2025-07-27 23:42:31,082 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:42:58] 2025-07-27 23:42:32,086 | INFO     | [job] queue monitor thread has finished
[2025-07-27 19:42:58] 2025-07-27 23:42:33,439 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 19:42:58] 2025-07-27 23:42:39,187 | INFO     | job.realtimelogging is not enabled
[2025-07-27 19:42:58] 2025-07-27 23:42:40,194 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 19:42:58] 2025-07-27 23:42:40,463 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139896077846336)>', '<ExcThread(monitor, started 139895070783232)>']
[2025-07-27 19:42:58] 2025-07-27 23:42:45,488 | INFO     | all workflow threads have been joined
[2025-07-27 19:42:58] 2025-07-27 23:42:45,488 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 19:42:58] 2025-07-27 23:42:45,488 | INFO     | traces error code: 0
[2025-07-27 19:42:58] 2025-07-27 23:42:45,489 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 19:42:58] 2025-07-27 23:42:52,641 [wrapper] supervise_pilot (15 min periods counter: 7)
[2025-07-27 19:42:58] 2025-07-27 23:42:58,476 | INFO     | PID=3040520 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 19:42:58] 2025-07-27 23:42:58,478 | INFO     | .. there are 14 such processes running
[2025-07-27 19:42:58] 2025-07-27 23:42:58,478 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 19:42:58] 2025-07-27 23:42:58,479 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 19:42:58] 2025-07-27 23:42:58,479 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 19:42:58] 2025-07-27 23:42:58,479 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 19:42:58] 2025-07-27 23:42:58,479 | INFO     | [monitor] control thread has ended
[2025-07-27 19:42:58] 2025-07-27 23:42:58,596 [wrapper] ==== pilot stdout END ====
[2025-07-27 19:42:58] 2025-07-27 23:42:58,602 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 19:42:58] 2025-07-27 23:42:58,607 [wrapper] pilotpid: 3040520
[2025-07-27 19:42:58] 2025-07-27 23:42:58,611 [wrapper] Pilot exit status: 0
[2025-07-27 19:42:58] 2025-07-27 23:42:58,626 [wrapper] pandaids: 6747548921
[2025-07-27 19:42:58] 2025-07-27 23:42:58,719 [wrapper] cleanup supervisor_pilot 3401929 3040521
[2025-07-27 19:42:58] 2025-07-27 23:42:58,723 [wrapper] Test setup, not cleaning
[2025-07-27 19:42:58] 2025-07-27 23:42:58,727 [wrapper] apfmon messages muted
[2025-07-27 19:42:58] 2025-07-27 23:42:58,731 [wrapper] ==== wrapper stdout END ====
[2025-07-27 19:42:58] 2025-07-27 23:42:58,734 [wrapper] ==== wrapper stderr END ====
[2025-07-27 19:42:58]  *** Error codes and diagnostics ***
[2025-07-27 19:42:58]     "exeErrorCode": 0,
[2025-07-27 19:42:58]     "exeErrorDiag": "",
[2025-07-27 19:42:58]     "pilotErrorCode": 0,
[2025-07-27 19:42:58]     "pilotErrorDiag": "",
[2025-07-27 19:42:58]  *** Listing of results directory ***
[2025-07-27 19:42:58] total 353412
[2025-07-27 19:42:58] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 12:55 pilot3.tar.gz
[2025-07-27 19:42:58] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 13:19 queuedata.json
[2025-07-27 19:42:58] -rwx------. 1 boincer umatlas     36292 Jul 27 13:19 runpilot2-wrapper.sh
[2025-07-27 19:42:58] -rw-r--r--. 1 boincer umatlas       100 Jul 27 18:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 19:42:58] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 18:12 run_atlas
[2025-07-27 19:42:58] -rw-r--r--. 1 boincer umatlas       105 Jul 27 18:12 job.xml
[2025-07-27 19:42:58] -rw-r--r--. 2 boincer umatlas 144588864 Jul 27 18:12 EVNT.45743347._002822.pool.root.1
[2025-07-27 19:42:58] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 18:12 start_atlas.sh
[2025-07-27 19:42:58] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 18:12 shared
[2025-07-27 19:42:58] -rw-r--r--. 2 boincer umatlas    542902 Jul 27 18:12 input.tar.gz
[2025-07-27 19:42:58] -rw-r--r--. 1 boincer umatlas         0 Jul 27 18:12 boinc_lockfile
[2025-07-27 19:42:58] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 18:12 pandaJob.out
[2025-07-27 19:42:58] -rw-------. 1 boincer umatlas    980117 Jul 27 18:12 agis_schedconf.cvmfs.json
[2025-07-27 19:42:58] -rw-------. 1 boincer umatlas   1593052 Jul 27 18:12 agis_ddmendpoints.agis.ALL.json
[2025-07-27 19:42:58] drwx------. 4 boincer umatlas      4096 Jul 27 18:12 pilot3
[2025-07-27 19:42:58] -rw-r--r--. 1 boincer umatlas      6946 Jul 27 19:36 init_data.xml
[2025-07-27 19:42:58] -rw-------. 1 boincer umatlas 211765600 Jul 27 19:41 HITS.45743349._052788.pool.root.1
[2025-07-27 19:42:58] -rw-r--r--. 1 boincer umatlas       529 Jul 27 19:41 boinc_task_state.xml
[2025-07-27 19:42:58] -rw-------. 1 boincer umatlas        95 Jul 27 19:42 pilot_heartbeat.json
[2025-07-27 19:42:58] -rw-------. 1 boincer umatlas      1028 Jul 27 19:42 memory_monitor_summary.json
[2025-07-27 19:42:58] -rw-------. 1 boincer umatlas    309442 Jul 27 19:42 log.45743349._052788.job.log.tgz.1
[2025-07-27 19:42:58] -rw-------. 1 boincer umatlas      7761 Jul 27 19:42 heartbeat.json
[2025-07-27 19:42:58] -rw-r--r--. 1 boincer umatlas        27 Jul 27 19:42 wrapper_checkpoint.txt
[2025-07-27 19:42:58] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 19:42 boinc_mmap_file
[2025-07-27 19:42:58] -rw-------. 1 boincer umatlas       823 Jul 27 19:42 pilotlog.txt
[2025-07-27 19:42:58] -rw-------. 1 boincer umatlas    518178 Jul 27 19:42 log.45743349._052788.job.log.1
[2025-07-27 19:42:58] -rw-------. 1 boincer umatlas       357 Jul 27 19:42 output.list
[2025-07-27 19:42:58] -rw-r--r--. 1 boincer umatlas       620 Jul 27 19:42 runtime_log
[2025-07-27 19:42:58] -rw-------. 1 boincer umatlas    849920 Jul 27 19:42 result.tar.gz
[2025-07-27 19:42:58] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 19:42 runtime_log.err
[2025-07-27 19:42:58] -rw-------. 1 boincer umatlas       651 Jul 27 19:42 eq6MDmaDK07n9Rq4apOajLDm4fhM0noT9bVof3QYDmGp2KDmyCbIdm.diag
[2025-07-27 19:42:58] -rw-r--r--. 1 boincer umatlas     22016 Jul 27 19:42 stderr.txt
[2025-07-27 19:42:58] HITS file was successfully produced:
[2025-07-27 19:42:58] -rw-------. 1 boincer umatlas 211765600 Jul 27 19:41 shared/HITS.pool.root.1
[2025-07-27 19:42:58]  *** Contents of shared directory: ***
[2025-07-27 19:42:58] total 349396
[2025-07-27 19:42:58] -rw-r--r--. 2 boincer umatlas 144588864 Jul 27 18:12 ATLAS.root_0
[2025-07-27 19:42:58] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 18:12 start_atlas.sh
[2025-07-27 19:42:58] -rw-r--r--. 2 boincer umatlas    542902 Jul 27 18:12 input.tar.gz
[2025-07-27 19:42:58] -rw-------. 1 boincer umatlas 211765600 Jul 27 19:41 HITS.pool.root.1
[2025-07-27 19:42:58] -rw-------. 1 boincer umatlas    849920 Jul 27 19:42 result.tar.gz
19:43:00 (3036938): run_atlas exited; CPU time 36740.064741
19:43:00 (3036938): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN