Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:50:49 (2189235): wrapper (7.7.26015): starting
10:50:49 (2189235): wrapper: running run_atlas (--nthreads 6)
[2025-07-28 10:50:49] Arguments: --nthreads 6
[2025-07-28 10:50:49] Threads: 6
[2025-07-28 10:50:49] Checking for CVMFS
[2025-07-28 10:50:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 10:50:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 10:50:49] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 10:50:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 10:50:49] 2.11.5.0 2723278 4577 74220 148830 2 57 52230558 52428800 132 130560 0 10151880 99.997 157833 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-07-28 10:50:49] CVMFS is ok
[2025-07-28 10:50:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 10:50:49] Checking for apptainer binary...
[2025-07-28 10:50:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 10:50:49] Running /usr/bin/apptainer --version
[2025-07-28 10:50:50] apptainer version 1.3.5-1.el9
[2025-07-28 10:50:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 10:50:50] testio008
[2025-07-28 10:50:50] apptainer works
[2025-07-28 10:50:50] Set ATHENA_PROC_NUMBER=6
[2025-07-28 10:50:50] Set ATHENA_CORE_NUMBER=6
[2025-07-28 10:50:50] Starting ATLAS job with PandaID=6747413077
[2025-07-28 10:50:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 12:14:25]  *** The last 200 lines of the pilot log: ***
[2025-07-28 12:14:25] 2025-07-28 03:13:13,533 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 12:14:25] 2025-07-28 03:13:16,036 | INFO     | monitor loop #376: job 0:6747413077 is in state 'finished'
[2025-07-28 12:14:25] 2025-07-28 03:13:16,036 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 12:14:25] 2025-07-28 03:13:18,539 | INFO     | monitor loop #377: job 0:6747413077 is in state 'finished'
[2025-07-28 12:14:25] 2025-07-28 03:13:18,539 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 12:14:25] 2025-07-28 03:13:21,042 | INFO     | monitor loop #378: job 0:6747413077 is in state 'finished'
[2025-07-28 12:14:25] 2025-07-28 03:13:21,043 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 12:14:25] 2025-07-28 03:13:22,743 | INFO     | PID=2195568 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 12:14:25] 2025-07-28 03:13:22,743 | INFO     | .. there are 3 such processes running
[2025-07-28 12:14:25] 2025-07-28 03:13:23,545 | INFO     | monitor loop #379: job 0:6747413077 is in state 'finished'
[2025-07-28 12:14:25] 2025-07-28 03:13:23,546 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 12:14:25] 2025-07-28 03:13:26,049 | INFO     | monitor loop #380: job 0:6747413077 is in state 'finished'
[2025-07-28 12:14:25] 2025-07-28 03:13:26,049 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 12:14:25] 2025-07-28 03:13:28,551 | INFO     | monitor loop #381: job 0:6747413077 is in state 'finished'
[2025-07-28 12:14:25] 2025-07-28 03:13:28,551 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 12:14:25] 2025-07-28 03:13:31,054 | INFO     | monitor loop #382: job 0:6747413077 is in state 'finished'
[2025-07-28 12:14:25] 2025-07-28 03:13:31,055 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 12:14:25] 2025-07-28 03:13:33,557 | INFO     | monitor loop #383: job 0:6747413077 is in state 'finished'
[2025-07-28 12:14:25] 2025-07-28 03:13:33,557 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 12:14:25] 2025-07-28 03:13:36,059 | INFO     | monitor loop #384: job 0:6747413077 is in state 'finished'
[2025-07-28 12:14:25] 2025-07-28 03:13:36,059 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 12:14:25] 2025-07-28 03:13:37,774 | INFO     | 4965s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-28 12:14:25] 2025-07-28 03:13:38,562 | INFO     | monitor loop #385: job 0:6747413077 is in state 'finished'
[2025-07-28 12:14:25] 2025-07-28 03:13:38,562 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 12:14:25] 2025-07-28 03:13:41,065 | INFO     | monitor loop #386: job 0:6747413077 is in state 'finished'
[2025-07-28 12:14:25] 2025-07-28 03:13:41,065 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 12:14:25] 2025-07-28 03:13:43,568 | INFO     | monitor loop #387: job 0:6747413077 is in state 'finished'
[2025-07-28 12:14:25] 2025-07-28 03:13:43,568 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 12:14:25] 2025-07-28 03:13:44,843 | INFO     | PID=2195568 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 12:14:25] 2025-07-28 03:13:44,843 | INFO     | .. there are 3 such processes running
[2025-07-28 12:14:25] 2025-07-28 03:13:46,071 | INFO     | monitor loop #388: job 0:6747413077 is in state 'finished'
[2025-07-28 12:14:25] 2025-07-28 03:13:46,071 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 12:14:25] 2025-07-28 03:13:48,574 | INFO     | monitor loop #389: job 0:6747413077 is in state 'finished'
[2025-07-28 12:14:25] 2025-07-28 03:13:48,574 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 12:14:25] 2025-07-28 03:13:51,076 | INFO     | monitor loop #390: job 0:6747413077 is in state 'finished'
[2025-07-28 12:14:25] 2025-07-28 03:13:51,076 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 12:14:25] 2025-07-28 03:13:52,604 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 12:14:25] 2025-07-28 03:13:52,606 | INFO     | found 12 cores (12 cores per socket, 1 socket) , CPU MHz: 4099.9416
[2025-07-28 12:14:25] 2025-07-28 03:13:52,608 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6747413077/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 12:14:25] 2025-07-28 03:13:52,608 | INFO     | extracted standard info from prmon json
[2025-07-28 12:14:25] 2025-07-28 03:13:52,609 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 12:14:25] 2025-07-28 03:13:52,609 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 12:14:25] 2025-07-28 03:13:52,609 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 12:14:25] 2025-07-28 03:13:52,609 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 12:14:25] 2025-07-28 03:13:52,610 | INFO     | fitting pss+swap vs Time
[2025-07-28 12:14:25] 2025-07-28 03:13:52,610 | INFO     | sum of square deviations: 125630262.5
[2025-07-28 12:14:25] 2025-07-28 03:13:52,610 | INFO     | sum of deviations: 14819942954.5
[2025-07-28 12:14:25] 2025-07-28 03:13:52,610 | INFO     | mean x: 1753670002.5
[2025-07-28 12:14:25] 2025-07-28 03:13:52,610 | INFO     | mean y: 2353683.9594594594
[2025-07-28 12:14:25] 2025-07-28 03:13:52,610 | INFO     | -- intersect: -206868895972.68973
[2025-07-28 12:14:25] 2025-07-28 03:13:52,610 | INFO     | intersect: -206868895972.68973
[2025-07-28 12:14:25] 2025-07-28 03:13:52,610 | INFO     | chi2: 1.3911900882430035
[2025-07-28 12:14:25] 2025-07-28 03:13:52,610 | INFO     | -- intersect: -206868895972.68973
[2025-07-28 12:14:25] 2025-07-28 03:13:52,610 | INFO     | current memory leak: 117.96 B/s (using 74 data points, chi2=1.39)
[2025-07-28 12:14:25] 2025-07-28 03:13:52,611 | INFO     | could have reported an average CPU frequency of 3597 MHz (6 samples)
[2025-07-28 12:14:25] 2025-07-28 03:13:52,611 | INFO     | ..............................
[2025-07-28 12:14:25] 2025-07-28 03:13:52,611 | INFO     | . Timing measurements:
[2025-07-28 12:14:25] 2025-07-28 03:13:52,611 | INFO     | . get job = 0 s
[2025-07-28 12:14:25] 2025-07-28 03:13:52,611 | INFO     | . initial setup = 3 s
[2025-07-28 12:14:25] 2025-07-28 03:13:52,611 | INFO     | . payload setup = 1 s
[2025-07-28 12:14:25] 2025-07-28 03:13:52,611 | INFO     | . stage-in = 0 s
[2025-07-28 12:14:25] 2025-07-28 03:13:52,611 | INFO     | . payload execution = 4884 s
[2025-07-28 12:14:25] 2025-07-28 03:13:52,611 | INFO     | . stage-out = 0 s
[2025-07-28 12:14:25] 2025-07-28 03:13:52,611 | INFO     | . log creation = 0 s
[2025-07-28 12:14:25] 2025-07-28 03:13:52,611 | INFO     | ..............................
[2025-07-28 12:14:25] 2025-07-28 03:13:52,963 | INFO     | 
[2025-07-28 12:14:25] 2025-07-28 03:13:52,963 | INFO     | job summary report
[2025-07-28 12:14:25] 2025-07-28 03:13:52,963 | INFO     | --------------------------------------------------
[2025-07-28 12:14:25] 2025-07-28 03:13:52,963 | INFO     | PanDA job id: 6747413077
[2025-07-28 12:14:25] 2025-07-28 03:13:52,963 | INFO     | task id: 45743349
[2025-07-28 12:14:25] 2025-07-28 03:13:52,963 | INFO     | errors: (none)
[2025-07-28 12:14:25] 2025-07-28 03:13:52,964 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 12:14:25] 2025-07-28 03:13:52,964 | INFO     | pilot state: finished 
[2025-07-28 12:14:25] 2025-07-28 03:13:52,964 | INFO     | transexitcode: 0
[2025-07-28 12:14:25] 2025-07-28 03:13:52,964 | INFO     | exeerrorcode: 0
[2025-07-28 12:14:25] 2025-07-28 03:13:52,964 | INFO     | exeerrordiag: 
[2025-07-28 12:14:25] 2025-07-28 03:13:52,964 | INFO     | exitcode: 0
[2025-07-28 12:14:25] 2025-07-28 03:13:52,964 | INFO     | exitmsg: OK
[2025-07-28 12:14:25] 2025-07-28 03:13:52,964 | INFO     | cpuconsumptiontime: 25039 s
[2025-07-28 12:14:25] 2025-07-28 03:13:52,964 | INFO     | nevents: 400
[2025-07-28 12:14:25] 2025-07-28 03:13:52,964 | INFO     | neventsw: 0
[2025-07-28 12:14:25] 2025-07-28 03:13:52,964 | INFO     | pid: 2218715
[2025-07-28 12:14:25] 2025-07-28 03:13:52,964 | INFO     | pgrp: 2218715
[2025-07-28 12:14:25] 2025-07-28 03:13:52,964 | INFO     | corecount: 6
[2025-07-28 12:14:25] 2025-07-28 03:13:52,964 | INFO     | event service: False
[2025-07-28 12:14:25] 2025-07-28 03:13:52,964 | INFO     | sizes: {0: 2397475, 1: 2397737, 10: 2397765, 4889: 2424038, 4890: 2433092, 4964: 2433230}
[2025-07-28 12:14:25] 2025-07-28 03:13:52,964 | INFO     | --------------------------------------------------
[2025-07-28 12:14:25] 2025-07-28 03:13:52,964 | INFO     | 
[2025-07-28 12:14:25] 2025-07-28 03:13:52,964 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-07-28 12:14:25] 2025-07-28 03:13:52,977 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 12:14:25] 2025-07-28 03:13:52,977 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 12:14:25] 2025-07-28 03:13:52,977 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 12:14:25] 2025-07-28 03:13:52,977 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 12:14:25] 2025-07-28 03:13:52,977 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 12:14:25] 2025-07-28 03:13:52,977 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 12:14:25] 2025-07-28 03:13:52,977 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 12:14:25] 2025-07-28 03:13:52,977 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 12:14:25] 2025-07-28 03:13:52,977 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 12:14:25] 2025-07-28 03:13:52,977 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 12:14:25] 2025-07-28 03:13:52,977 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 12:14:25] 2025-07-28 03:13:52,977 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 12:14:25] 2025-07-28 03:13:52,977 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 12:14:25] 2025-07-28 03:13:52,977 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 12:14:25] 2025-07-28 03:13:52,977 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 12:14:25] 2025-07-28 03:13:52,977 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 12:14:25] 2025-07-28 03:13:52,977 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 12:14:25] 2025-07-28 03:13:52,977 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 12:14:25] 2025-07-28 03:13:52,977 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 12:14:25] 2025-07-28 03:13:52,977 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 12:14:25] 2025-07-28 03:13:52,978 | INFO     | job 6747413077 has completed (purged errors)
[2025-07-28 12:14:25] 2025-07-28 03:13:52,978 | INFO     | overall cleanup function is called
[2025-07-28 12:14:25] 2025-07-28 03:13:53,984 | INFO     | --- collectZombieJob: --- 10, [2218715]
[2025-07-28 12:14:25] 2025-07-28 03:13:53,984 | INFO     | zombie collector waiting for pid 2218715
[2025-07-28 12:14:25] 2025-07-28 03:13:53,984 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 12:14:25] 2025-07-28 03:13:53,984 | INFO     | collected zombie processes
[2025-07-28 12:14:25] 2025-07-28 03:13:53,984 | INFO     | will attempt to kill all subprocesses of pid=2218715
[2025-07-28 12:14:25] 2025-07-28 03:13:54,021 | INFO     | process IDs to be killed: [2218715] (in reverse order)
[2025-07-28 12:14:25] 2025-07-28 03:13:54,039 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 12:14:25] 2025-07-28 03:13:54,039 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 12:14:25] 2025-07-28 03:13:54,040 | INFO     | did not find any defunct processes belonging to 2218715
[2025-07-28 12:14:25] 2025-07-28 03:13:54,042 | INFO     | did not find any defunct processes belonging to 2218715
[2025-07-28 12:14:25] 2025-07-28 03:13:54,042 | INFO     | ready for new job
[2025-07-28 12:14:25] 2025-07-28 03:13:54,042 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 12:14:25] 2025-07-28 03:13:54,043 | INFO     | ***************************************
[2025-07-28 12:14:25] 2025-07-28 03:13:54,043 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 12:14:25] 2025-07-28 03:13:54,043 | INFO     | ***************************************
[2025-07-28 12:14:25] 2025-07-28 03:13:54,043 | INFO     | 
[2025-07-28 12:14:25] 2025-07-28 03:13:54,043 | INFO     | architecture information:
[2025-07-28 12:14:25] 2025-07-28 03:13:54,043 | INFO     | executing command: cat /etc/os-release
[2025-07-28 12:14:25] 2025-07-28 03:13:54,049 | INFO     | cat /etc/os-release:
[2025-07-28 12:14:25] NAME="CentOS Linux"
[2025-07-28 12:14:25] VERSION="7 (Core)"
[2025-07-28 12:14:25] ID="centos"
[2025-07-28 12:14:25] ID_LIKE="rhel fedora"
[2025-07-28 12:14:25] VERSION_ID="7"
[2025-07-28 12:14:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 12:14:25] ANSI_COLOR="0;31"
[2025-07-28 12:14:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 12:14:25] HOME_URL="https://www.centos.org/"
[2025-07-28 12:14:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 12:14:25] 
[2025-07-28 12:14:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 12:14:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 12:14:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 12:14:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 12:14:25] 
[2025-07-28 12:14:25] 2025-07-28 03:13:54,049 | INFO     | ***************************************
[2025-07-28 12:14:25] 2025-07-28 03:13:54,551 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-07-28 12:14:25] 2025-07-28 03:13:54,562 | INFO     | sufficient remaining disk space (271100936192 B)
[2025-07-28 12:14:25] 2025-07-28 03:13:54,562 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 12:14:25] 2025-07-28 03:13:54,562 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 12:14:25] 2025-07-28 03:13:54,562 | INFO     | update_server=False
[2025-07-28 12:14:25] 2025-07-28 03:13:54,563 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 12:14:25] 2025-07-28 03:13:54,563 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 12:14:25] 2025-07-28 03:13:54,563 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 12:14:25] 2025-07-28 03:13:54,584 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 12:14:25] 2025-07-28 03:13:54,584 | INFO     | aborting loop
[2025-07-28 12:14:25] 2025-07-28 03:13:54,849 | INFO     | all payload control threads have been joined
[2025-07-28 12:14:25] 2025-07-28 03:13:54,851 | INFO     | all data control threads have been joined
[2025-07-28 12:14:25] 2025-07-28 03:13:55,412 | INFO     | all job control threads have been joined
[2025-07-28 12:14:25] 2025-07-28 03:13:55,567 | INFO     | [job] retrieve thread has finished
[2025-07-28 12:14:25] 2025-07-28 03:13:55,568 | INFO     | [job] queue monitor thread has finished
[2025-07-28 12:14:25] 2025-07-28 03:13:55,588 | INFO     | [job] job monitor thread has finished
[2025-07-28 12:14:25] 2025-07-28 03:13:55,793 | INFO     | [data] copytool_in thread has finished
[2025-07-28 12:14:25] 2025-07-28 03:13:55,854 | INFO     | [payload] control thread has finished
[2025-07-28 12:14:25] 2025-07-28 03:13:55,856 | INFO     | [data] control thread has finished
[2025-07-28 12:14:25] 2025-07-28 03:13:56,097 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 12:14:25] 2025-07-28 03:13:56,167 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 12:14:25] 2025-07-28 03:13:56,417 | INFO     | [job] control thread has finished
[2025-07-28 12:14:25] 2025-07-28 03:13:56,447 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 12:14:25] 2025-07-28 03:13:56,480 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 12:14:25] 2025-07-28 03:13:56,495 | INFO     | [payload] failed_post thread has finished
[2025-07-28 12:14:25] 2025-07-28 03:13:56,568 | INFO     | [data] copytool_out thread has finished
[2025-07-28 12:14:25] 2025-07-28 03:13:56,984 | INFO     | [job] validate thread has finished
[2025-07-28 12:14:25] 2025-07-28 03:13:57,006 | INFO     | [payload] validate_post thread has finished
[2025-07-28 12:14:25] 2025-07-28 03:14:00,173 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 12:14:25] 2025-07-28 03:14:05,604 | INFO     | job.realtimelogging is not enabled
[2025-07-28 12:14:25] 2025-07-28 03:14:06,610 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 12:14:25] 2025-07-28 03:14:06,749 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140334273734464)>', '<ExcThread(monitor, started 140333912397568)>']
[2025-07-28 12:14:25] 2025-07-28 03:14:11,774 | INFO     | all workflow threads have been joined
[2025-07-28 12:14:25] 2025-07-28 03:14:11,774 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 12:14:25] 2025-07-28 03:14:11,774 | INFO     | traces error code: 0
[2025-07-28 12:14:25] 2025-07-28 03:14:11,775 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 12:14:25] 2025-07-28 03:14:24,991 | INFO     | PID=2195568 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 12:14:25] 2025-07-28 03:14:24,992 | INFO     | .. there are 3 such processes running
[2025-07-28 12:14:25] 2025-07-28 03:14:24,992 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 12:14:25] 2025-07-28 03:14:24,992 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 12:14:25] 2025-07-28 03:14:24,992 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 12:14:25] 2025-07-28 03:14:24,992 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 12:14:25] 2025-07-28 03:14:24,992 | INFO     | [monitor] control thread has ended
[2025-07-28 12:14:25] 2025-07-28 03:14:25,088 [wrapper] ==== pilot stdout END ====
[2025-07-28 12:14:25] 2025-07-28 03:14:25,090 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 12:14:25] 2025-07-28 03:14:25,091 [wrapper] pilotpid: 2195568
[2025-07-28 12:14:25] 2025-07-28 03:14:25,092 [wrapper] Pilot exit status: 0
[2025-07-28 12:14:25] 2025-07-28 03:14:25,097 [wrapper] pandaids: 6747413077
[2025-07-28 12:14:25] 2025-07-28 03:14:25,107 [wrapper] cleanup supervisor_pilot 2252190 2195569
[2025-07-28 12:14:25] 2025-07-28 03:14:25,108 [wrapper] Test setup, not cleaning
[2025-07-28 12:14:25] 2025-07-28 03:14:25,109 [wrapper] apfmon messages muted
[2025-07-28 12:14:25] 2025-07-28 03:14:25,110 [wrapper] ==== wrapper stdout END ====
[2025-07-28 12:14:25] 2025-07-28 03:14:25,111 [wrapper] ==== wrapper stderr END ====
[2025-07-28 12:14:25]  *** Error codes and diagnostics ***
[2025-07-28 12:14:25]     "exeErrorCode": 0,
[2025-07-28 12:14:25]     "exeErrorDiag": "",
[2025-07-28 12:14:25]     "pilotErrorCode": 0,
[2025-07-28 12:14:25]     "pilotErrorDiag": "",
[2025-07-28 12:14:25]  *** Listing of results directory ***
[2025-07-28 12:14:25] total 344160
[2025-07-28 12:14:25] -rw-r--r--. 1 boinc boinc    530466 Jul 27 23:11 pilot3.tar.gz
[2025-07-28 12:14:25] -rwx------. 1 boinc boinc     36292 Jul 27 23:23 runpilot2-wrapper.sh
[2025-07-28 12:14:25] -rw-r--r--. 1 boinc boinc      5112 Jul 27 23:23 queuedata.json
[2025-07-28 12:14:25] -rw-r--r--. 1 boinc boinc       100 Jul 28 10:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 12:14:25] -rwxr-xr-x. 1 boinc boinc      7986 Jul 28 10:50 run_atlas
[2025-07-28 12:14:25] -rw-r--r--. 1 boinc boinc       105 Jul 28 10:50 job.xml
[2025-07-28 12:14:25] -rw-r--r--. 2 boinc boinc     15095 Jul 28 10:50 start_atlas.sh
[2025-07-28 12:14:25] drwxrwx--x. 2 boinc boinc        68 Jul 28 10:50 shared
[2025-07-28 12:14:25] -rw-r--r--. 2 boinc boinc    542886 Jul 28 10:50 input.tar.gz
[2025-07-28 12:14:25] -rw-r--r--. 1 boinc boinc      9508 Jul 28 10:50 init_data.xml
[2025-07-28 12:14:25] -rw-r--r--. 2 boinc boinc 143325074 Jul 28 10:50 EVNT.45743347._002777.pool.root.1
[2025-07-28 12:14:25] -rw-r--r--. 1 boinc boinc         0 Jul 28 10:50 boinc_lockfile
[2025-07-28 12:14:25] -rw-r--r--. 1 boinc boinc      2563 Jul 28 10:50 pandaJob.out
[2025-07-28 12:14:25] -rw-------. 1 boinc boinc    980125 Jul 28 10:50 agis_schedconf.cvmfs.json
[2025-07-28 12:14:25] -rw-------. 1 boinc boinc   1593052 Jul 28 10:50 agis_ddmendpoints.agis.ALL.json
[2025-07-28 12:14:25] drwx------. 4 boinc boinc      4096 Jul 28 10:50 pilot3
[2025-07-28 12:14:25] -rw-------. 1 boinc boinc 203692732 Jul 28 12:12 HITS.45743349._049960.pool.root.1
[2025-07-28 12:14:25] -rw-r--r--. 1 boinc boinc       529 Jul 28 12:12 boinc_task_state.xml
[2025-07-28 12:14:25] -rw-------. 1 boinc boinc      1021 Jul 28 12:12 memory_monitor_summary.json
[2025-07-28 12:14:25] -rw-------. 1 boinc boinc    274985 Jul 28 12:12 log.45743349._049960.job.log.tgz.1
[2025-07-28 12:14:25] -rw-------. 1 boinc boinc        95 Jul 28 12:13 pilot_heartbeat.json
[2025-07-28 12:14:25] -rw-------. 1 boinc boinc      7763 Jul 28 12:13 heartbeat.json
[2025-07-28 12:14:25] -rw-r--r--. 1 boinc boinc      8192 Jul 28 12:14 boinc_mmap_file
[2025-07-28 12:14:25] -rw-r--r--. 1 boinc boinc        27 Jul 28 12:14 wrapper_checkpoint.txt
[2025-07-28 12:14:25] -rw-------. 1 boinc boinc       822 Jul 28 12:14 pilotlog.txt
[2025-07-28 12:14:25] -rw-------. 1 boinc boinc    489592 Jul 28 12:14 log.45743349._049960.job.log.1
[2025-07-28 12:14:25] -rw-------. 1 boinc boinc       357 Jul 28 12:14 output.list
[2025-07-28 12:14:25] -rw-r--r--. 1 boinc boinc       620 Jul 28 12:14 runtime_log
[2025-07-28 12:14:25] -rw-------. 1 boinc boinc    788480 Jul 28 12:14 result.tar.gz
[2025-07-28 12:14:25] -rw-r--r--. 1 boinc boinc      8618 Jul 28 12:14 runtime_log.err
[2025-07-28 12:14:25] -rw-------. 1 boinc boinc       641 Jul 28 12:14 Al1LDmoSH07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmhXVLDmHAm4Rm.diag
[2025-07-28 12:14:25] -rw-r--r--. 1 boinc boinc     22145 Jul 28 12:14 stderr.txt
[2025-07-28 12:14:25] HITS file was successfully produced:
[2025-07-28 12:14:25] -rw-------. 1 boinc boinc 203692732 Jul 28 12:12 shared/HITS.pool.root.1
[2025-07-28 12:14:25]  *** Contents of shared directory: ***
[2025-07-28 12:14:25] total 340208
[2025-07-28 12:14:25] -rw-r--r--. 2 boinc boinc     15095 Jul 28 10:50 start_atlas.sh
[2025-07-28 12:14:25] -rw-r--r--. 2 boinc boinc    542886 Jul 28 10:50 input.tar.gz
[2025-07-28 12:14:25] -rw-r--r--. 2 boinc boinc 143325074 Jul 28 10:50 ATLAS.root_0
[2025-07-28 12:14:25] -rw-------. 1 boinc boinc 203692732 Jul 28 12:12 HITS.pool.root.1
[2025-07-28 12:14:25] -rw-------. 1 boinc boinc    788480 Jul 28 12:14 result.tar.gz
12:14:26 (2189235): run_atlas exited; CPU time 25070.374083
12:14:26 (2189235): called boinc_finish(0)

</stderr_txt>
]]>

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