Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:30:20 (1357447): wrapper (7.7.26015): starting
19:30:20 (1357447): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 19:30:20] Arguments: --nthreads 12
[2025-07-27 19:30:20] Threads: 12
[2025-07-27 19:30:20] Checking for CVMFS
[2025-07-27 19:30:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 19:30:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 19:30:21] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 19:30:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 19:30:21] 2.12.6.0 1263230 19026 333616 148828 1 65 16781118 32935937 8223 16776704 0 37145747 99.601 59381747 28920 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 19:30:21] CVMFS is ok
[2025-07-27 19:30:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 19:30:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 19:30:21] Further information can be found at the LHC@home message board.
[2025-07-27 19:30:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 19:30:21] Checking for apptainer binary...
[2025-07-27 19:30:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 19:30:21] Running /usr/bin/apptainer --version
[2025-07-27 19:30:21] apptainer version 1.4.1-1.el9
[2025-07-27 19:30:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 19:30:21] c6-5-7-2.aglt2.org
[2025-07-27 19:30:21] apptainer works
[2025-07-27 19:30:21] Set ATHENA_PROC_NUMBER=12
[2025-07-27 19:30:21] Set ATHENA_CORE_NUMBER=12
[2025-07-27 19:30:21] Starting ATLAS job with PandaID=6747548371
[2025-07-27 19:30:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 20:50:42]  *** The last 200 lines of the pilot log: ***
[2025-07-27 20:50:42]  lfn=log.45743349._052440.job.log.tgz.1
[2025-07-27 20:50:42]  mtime=0
[2025-07-27 20:50:42]  protocol_id=None
[2025-07-27 20:50:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 20:50:42]  replicas=None
[2025-07-27 20:50:42]  scope=mc23_13p6TeV
[2025-07-27 20:50:42]  status=None
[2025-07-27 20:50:42]  status_code=0
[2025-07-27 20:50:42]  storage_token=
[2025-07-27 20:50:42]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747548371/log.45743349._052440.job.log.tgz.1
[2025-07-27 20:50:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bb/b1/log.45743349._052440.job.log.tgz.1
[2025-07-27 20:50:42]  workdir=None
[2025-07-27 20:50:42] ]
[2025-07-27 20:50:42] 2025-07-28 00:50:01,267 | INFO     | transferring file log.45743349._052440.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747548371/log.45743349._052440.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 20:50:42] 2025-07-28 00:50:01,267 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747548371/log.45743349._052440.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._052440.job
[2025-07-27 20:50:42] 2025-07-28 00:50:01,288 | INFO     | adding to output.list: log.45743349._052440.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bb/b1/log.45743349._052440.job.log.tg
[2025-07-27 20:50:42] 2025-07-28 00:50:01,290 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 20:50:42] 2025-07-28 00:50:01,290 | INFO     | summary of transferred files:
[2025-07-27 20:50:42] 2025-07-28 00:50:01,290 | INFO     |  -- lfn=log.45743349._052440.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 20:50:42] 2025-07-28 00:50:01,290 | INFO     | stage-out finished correctly
[2025-07-27 20:50:42] 2025-07-28 00:50:01,422 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 20:50:42] 2025-07-28 00:50:03,700 | INFO     | monitor loop #351: job 0:6747548371 is in state 'finished'
[2025-07-27 20:50:42] 2025-07-28 00:50:03,701 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:50:42] 2025-07-28 00:50:03,919 | INFO     | job 6747548371 has state=finished
[2025-07-27 20:50:42] 2025-07-28 00:50:03,919 | INFO     | preparing for final server update for job 6747548371 in state='finished'
[2025-07-27 20:50:42] 2025-07-28 00:50:03,920 | INFO     | this job has now completed (state=finished)
[2025-07-27 20:50:42] 2025-07-28 00:50:03,920 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 20:50:42] 2025-07-28 00:50:03,920 | INFO     | log transfer has been attempted: DONE
[2025-07-27 20:50:42] 2025-07-28 00:50:03,920 | INFO     | job 6747548371 has finished - writing final server update
[2025-07-27 20:50:42] 2025-07-28 00:50:03,920 | INFO     | total number of processed events: 400 (read)
[2025-07-27 20:50:42] 2025-07-28 00:50:03,922 | INFO     | executing command: lscpu
[2025-07-27 20:50:42] 2025-07-28 00:50:03,964 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 20:50:42] 2025-07-28 00:50:06,204 | INFO     | monitor loop #352: job 0:6747548371 is in state 'finished'
[2025-07-27 20:50:42] 2025-07-28 00:50:06,204 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:50:42] 2025-07-28 00:50:08,709 | INFO     | monitor loop #353: job 0:6747548371 is in state 'finished'
[2025-07-27 20:50:42] 2025-07-28 00:50:08,710 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:50:42] 2025-07-28 00:50:09,550 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 20:50:42] 2025-07-28 00:50:09,558 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2762.1514107142852
[2025-07-27 20:50:42] 2025-07-28 00:50:09,567 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747548371/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 20:50:42] 2025-07-28 00:50:09,568 | INFO     | extracted standard info from prmon json
[2025-07-27 20:50:42] 2025-07-28 00:50:09,568 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 20:50:42] 2025-07-28 00:50:09,568 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 20:50:42] 2025-07-28 00:50:09,569 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 20:50:42] 2025-07-28 00:50:09,569 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 20:50:42] 2025-07-28 00:50:09,571 | INFO     | fitting pss+swap vs Time
[2025-07-27 20:50:42] 2025-07-28 00:50:09,571 | INFO     | sum of square deviations: 110960220.0
[2025-07-27 20:50:42] 2025-07-28 00:50:09,572 | INFO     | sum of deviations: -13602733185.999998
[2025-07-27 20:50:42] 2025-07-28 00:50:09,572 | INFO     | mean x: 1753661505.0
[2025-07-27 20:50:42] 2025-07-28 00:50:09,572 | INFO     | mean y: 2631406.1408450706
[2025-07-27 20:50:42] 2025-07-28 00:50:09,572 | INFO     | -- intersect: 214985888929.19012
[2025-07-27 20:50:42] 2025-07-28 00:50:09,572 | INFO     | intersect: 214985888929.19012
[2025-07-27 20:50:42] 2025-07-28 00:50:09,572 | INFO     | chi2: 0.1783610316695051
[2025-07-27 20:50:42] 2025-07-28 00:50:09,572 | INFO     | -- intersect: 214985888929.19012
[2025-07-27 20:50:42] 2025-07-28 00:50:09,572 | INFO     | current memory leak: -122.59 B/s (using 71 data points, chi2=0.18)
[2025-07-27 20:50:42] 2025-07-28 00:50:09,573 | INFO     | could have reported an average CPU frequency of 2675 MHz (6 samples)
[2025-07-27 20:50:42] 2025-07-28 00:50:09,573 | INFO     | ..............................
[2025-07-27 20:50:42] 2025-07-28 00:50:09,573 | INFO     | . Timing measurements:
[2025-07-27 20:50:42] 2025-07-28 00:50:09,573 | INFO     | . get job = 0 s
[2025-07-27 20:50:42] 2025-07-28 00:50:09,573 | INFO     | . initial setup = 3 s
[2025-07-27 20:50:42] 2025-07-28 00:50:09,573 | INFO     | . payload setup = 8 s
[2025-07-27 20:50:42] 2025-07-28 00:50:09,573 | INFO     | . stage-in = 0 s
[2025-07-27 20:50:42] 2025-07-28 00:50:09,573 | INFO     | . payload execution = 4736 s
[2025-07-27 20:50:42] 2025-07-28 00:50:09,573 | INFO     | . stage-out = 0 s
[2025-07-27 20:50:42] 2025-07-28 00:50:09,573 | INFO     | . log creation = 0 s
[2025-07-27 20:50:42] 2025-07-28 00:50:09,574 | INFO     | ..............................
[2025-07-27 20:50:42] 2025-07-28 00:50:09,662 | INFO     | 
[2025-07-27 20:50:42] 2025-07-28 00:50:09,663 | INFO     | job summary report
[2025-07-27 20:50:42] 2025-07-28 00:50:09,663 | INFO     | --------------------------------------------------
[2025-07-27 20:50:42] 2025-07-28 00:50:09,663 | INFO     | PanDA job id: 6747548371
[2025-07-27 20:50:42] 2025-07-28 00:50:09,663 | INFO     | task id: 45743349
[2025-07-27 20:50:42] 2025-07-28 00:50:09,663 | INFO     | errors: (none)
[2025-07-27 20:50:42] 2025-07-28 00:50:09,663 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 20:50:42] 2025-07-28 00:50:09,663 | INFO     | pilot state: finished 
[2025-07-27 20:50:42] 2025-07-28 00:50:09,663 | INFO     | transexitcode: 0
[2025-07-27 20:50:42] 2025-07-28 00:50:09,663 | INFO     | exeerrorcode: 0
[2025-07-27 20:50:42] 2025-07-28 00:50:09,663 | INFO     | exeerrordiag: 
[2025-07-27 20:50:42] 2025-07-28 00:50:09,663 | INFO     | exitcode: 0
[2025-07-27 20:50:42] 2025-07-28 00:50:09,663 | INFO     | exitmsg: OK
[2025-07-27 20:50:42] 2025-07-28 00:50:09,663 | INFO     | cpuconsumptiontime: 50591 s
[2025-07-27 20:50:42] 2025-07-28 00:50:09,663 | INFO     | nevents: 400
[2025-07-27 20:50:42] 2025-07-28 00:50:09,663 | INFO     | neventsw: 0
[2025-07-27 20:50:42] 2025-07-28 00:50:09,663 | INFO     | pid: 1368265
[2025-07-27 20:50:42] 2025-07-28 00:50:09,663 | INFO     | pgrp: 1368265
[2025-07-27 20:50:42] 2025-07-28 00:50:09,664 | INFO     | corecount: 12
[2025-07-27 20:50:42] 2025-07-28 00:50:09,664 | INFO     | event service: False
[2025-07-27 20:50:42] 2025-07-28 00:50:09,664 | INFO     | sizes: {0: 2397475, 1: 2397475, 6: 2397765, 11: 2397793, 4748: 2423896, 4749: 2423895, 4750: 2433133, 4759: 2433271}
[2025-07-27 20:50:42] 2025-07-28 00:50:09,664 | INFO     | --------------------------------------------------
[2025-07-27 20:50:42] 2025-07-28 00:50:09,664 | INFO     | 
[2025-07-27 20:50:42] 2025-07-28 00:50:09,664 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 20:50:42] 2025-07-28 00:50:09,683 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 20:50:42] 2025-07-28 00:50:09,683 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 20:50:42] 2025-07-28 00:50:09,683 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 20:50:42] 2025-07-28 00:50:09,683 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 20:50:42] 2025-07-28 00:50:09,683 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 20:50:42] 2025-07-28 00:50:09,683 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 20:50:42] 2025-07-28 00:50:09,683 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 20:50:42] 2025-07-28 00:50:09,684 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 20:50:42] 2025-07-28 00:50:09,684 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 20:50:42] 2025-07-28 00:50:09,684 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 20:50:42] 2025-07-28 00:50:09,684 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 20:50:42] 2025-07-28 00:50:09,684 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 20:50:42] 2025-07-28 00:50:09,684 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 20:50:42] 2025-07-28 00:50:09,684 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 20:50:42] 2025-07-28 00:50:09,684 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 20:50:42] 2025-07-28 00:50:09,684 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 20:50:42] 2025-07-28 00:50:09,684 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 20:50:42] 2025-07-28 00:50:09,684 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 20:50:42] 2025-07-28 00:50:09,684 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 20:50:42] 2025-07-28 00:50:09,684 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 20:50:42] 2025-07-28 00:50:09,684 | INFO     | job 6747548371 has completed (purged errors)
[2025-07-27 20:50:42] 2025-07-28 00:50:09,684 | INFO     | overall cleanup function is called
[2025-07-27 20:50:42] 2025-07-28 00:50:10,693 | INFO     | --- collectZombieJob: --- 10, [1368265]
[2025-07-27 20:50:42] 2025-07-28 00:50:10,694 | INFO     | zombie collector waiting for pid 1368265
[2025-07-27 20:50:42] 2025-07-28 00:50:10,694 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 20:50:42] 2025-07-28 00:50:10,694 | INFO     | collected zombie processes
[2025-07-27 20:50:42] 2025-07-28 00:50:10,694 | INFO     | will attempt to kill all subprocesses of pid=1368265
[2025-07-27 20:50:42] 2025-07-28 00:50:11,012 | INFO     | process IDs to be killed: [1368265] (in reverse order)
[2025-07-27 20:50:42] 2025-07-28 00:50:11,111 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 20:50:42] 2025-07-28 00:50:11,113 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 20:50:42] 2025-07-28 00:50:11,125 | INFO     | did not find any defunct processes belonging to 1368265
[2025-07-27 20:50:42] 2025-07-28 00:50:11,140 | INFO     | did not find any defunct processes belonging to 1368265
[2025-07-27 20:50:42] 2025-07-28 00:50:11,140 | INFO     | ready for new job
[2025-07-27 20:50:42] 2025-07-28 00:50:11,141 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 20:50:42] 2025-07-28 00:50:11,144 | INFO     | ***************************************
[2025-07-27 20:50:42] 2025-07-28 00:50:11,144 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 20:50:42] 2025-07-28 00:50:11,144 | INFO     | ***************************************
[2025-07-27 20:50:42] 2025-07-28 00:50:11,144 | INFO     | 
[2025-07-27 20:50:42] 2025-07-28 00:50:11,162 | INFO     | architecture information:
[2025-07-27 20:50:42] 2025-07-28 00:50:11,163 | INFO     | executing command: cat /etc/os-release
[2025-07-27 20:50:42] 2025-07-28 00:50:11,180 | INFO     | cat /etc/os-release:
[2025-07-27 20:50:42] NAME="CentOS Linux"
[2025-07-27 20:50:42] VERSION="7 (Core)"
[2025-07-27 20:50:42] ID="centos"
[2025-07-27 20:50:42] ID_LIKE="rhel fedora"
[2025-07-27 20:50:42] VERSION_ID="7"
[2025-07-27 20:50:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 20:50:42] ANSI_COLOR="0;31"
[2025-07-27 20:50:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 20:50:42] HOME_URL="https://www.centos.org/"
[2025-07-27 20:50:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 20:50:42] 
[2025-07-27 20:50:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 20:50:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 20:50:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 20:50:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 20:50:42] 
[2025-07-27 20:50:42] 2025-07-28 00:50:11,180 | INFO     | ***************************************
[2025-07-27 20:50:42] 2025-07-28 00:50:11,684 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 20:50:42] 2025-07-28 00:50:11,706 | INFO     | sufficient remaining disk space (76369887232 B)
[2025-07-27 20:50:42] 2025-07-28 00:50:11,707 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 20:50:42] 2025-07-28 00:50:11,707 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 20:50:42] 2025-07-28 00:50:11,707 | INFO     | update_server=False
[2025-07-27 20:50:42] 2025-07-28 00:50:11,707 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 20:50:42] 2025-07-28 00:50:11,943 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 20:50:42] 2025-07-28 00:50:12,060 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 20:50:42] 2025-07-28 00:50:12,219 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 20:50:42] 2025-07-28 00:50:12,220 | INFO     | aborting loop
[2025-07-27 20:50:42] 2025-07-28 00:50:12,588 | INFO     | all payload control threads have been joined
[2025-07-27 20:50:42] 2025-07-28 00:50:12,665 | INFO     | all data control threads have been joined
[2025-07-27 20:50:42] 2025-07-28 00:50:12,713 | INFO     | [job] retrieve thread has finished
[2025-07-27 20:50:42] 2025-07-28 00:50:12,800 | INFO     | all job control threads have been joined
[2025-07-27 20:50:42] 2025-07-28 00:50:12,924 | INFO     | [payload] failed_post thread has finished
[2025-07-27 20:50:42] 2025-07-28 00:50:13,158 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 20:50:42] 2025-07-28 00:50:13,166 | INFO     | [data] copytool_in thread has finished
[2025-07-27 20:50:42] 2025-07-28 00:50:13,188 | INFO     | [job] validate thread has finished
[2025-07-27 20:50:42] 2025-07-28 00:50:13,226 | INFO     | [job] job monitor thread has finished
[2025-07-27 20:50:42] 2025-07-28 00:50:13,593 | INFO     | [payload] control thread has finished
[2025-07-27 20:50:42] 2025-07-28 00:50:13,664 | INFO     | [payload] validate_post thread has finished
[2025-07-27 20:50:42] 2025-07-28 00:50:13,670 | INFO     | [data] control thread has finished
[2025-07-27 20:50:42] 2025-07-28 00:50:13,726 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 20:50:42] 2025-07-28 00:50:13,805 | INFO     | [job] control thread has finished
[2025-07-27 20:50:42] 2025-07-28 00:50:13,866 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 20:50:42] 2025-07-28 00:50:13,950 | INFO     | [data] copytool_out thread has finished
[2025-07-27 20:50:42] 2025-07-28 00:50:14,676 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 20:50:42] 2025-07-28 00:50:15,682 | INFO     | [job] queue monitor thread has finished
[2025-07-27 20:50:42] 2025-07-28 00:50:16,066 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 20:50:42] 2025-07-28 00:50:22,624 | INFO     | job.realtimelogging is not enabled
[2025-07-27 20:50:42] 2025-07-28 00:50:23,630 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 20:50:42] 2025-07-28 00:50:25,143 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140016262367040)>', '<ExcThread(monitor, started 140015195649792)>']
[2025-07-27 20:50:42] 2025-07-28 00:50:30,168 | INFO     | all workflow threads have been joined
[2025-07-27 20:50:42] 2025-07-28 00:50:30,168 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 20:50:42] 2025-07-28 00:50:30,168 | INFO     | traces error code: 0
[2025-07-27 20:50:42] 2025-07-28 00:50:30,169 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 20:50:42] 2025-07-28 00:50:42,344 | INFO     | PID=1361027 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 20:50:42] 2025-07-28 00:50:42,345 | INFO     | .. there are 13 such processes running
[2025-07-27 20:50:42] 2025-07-28 00:50:42,345 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 20:50:42] 2025-07-28 00:50:42,345 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 20:50:42] 2025-07-28 00:50:42,346 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 20:50:42] 2025-07-28 00:50:42,346 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 20:50:42] 2025-07-28 00:50:42,346 | INFO     | [monitor] control thread has ended
[2025-07-27 20:50:42] 2025-07-28 00:50:42,552 [wrapper] ==== pilot stdout END ====
[2025-07-27 20:50:42] 2025-07-28 00:50:42,555 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 20:50:42] 2025-07-28 00:50:42,559 [wrapper] pilotpid: 1361027
[2025-07-27 20:50:42] 2025-07-28 00:50:42,565 [wrapper] Pilot exit status: 0
[2025-07-27 20:50:42] 2025-07-28 00:50:42,584 [wrapper] pandaids: 6747548371
[2025-07-27 20:50:42] 2025-07-28 00:50:42,666 [wrapper] cleanup supervisor_pilot 1581275 1361028
[2025-07-27 20:50:42] 2025-07-28 00:50:42,673 [wrapper] Test setup, not cleaning
[2025-07-27 20:50:42] 2025-07-28 00:50:42,677 [wrapper] apfmon messages muted
[2025-07-27 20:50:42] 2025-07-28 00:50:42,682 [wrapper] ==== wrapper stdout END ====
[2025-07-27 20:50:42] 2025-07-28 00:50:42,686 [wrapper] ==== wrapper stderr END ====
[2025-07-27 20:50:42]  *** Error codes and diagnostics ***
[2025-07-27 20:50:42]     "exeErrorCode": 0,
[2025-07-27 20:50:42]     "exeErrorDiag": "",
[2025-07-27 20:50:42]     "pilotErrorCode": 0,
[2025-07-27 20:50:42]     "pilotErrorDiag": "",
[2025-07-27 20:50:42]  *** Listing of results directory ***
[2025-07-27 20:50:42] total 437788
[2025-07-27 20:50:42] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 12:02 pilot3.tar.gz
[2025-07-27 20:50:42] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 12:49 queuedata.json
[2025-07-27 20:50:42] -rwx------. 1 boincer umatlas     36292 Jul 27 12:50 runpilot2-wrapper.sh
[2025-07-27 20:50:42] -rw-r--r--. 1 boincer umatlas       100 Jul 27 19:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 20:50:42] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 19:30 run_atlas
[2025-07-27 20:50:42] -rw-r--r--. 1 boincer umatlas       105 Jul 27 19:30 job.xml
[2025-07-27 20:50:42] -rw-r--r--. 2 boincer umatlas 229108685 Jul 27 19:30 EVNT.45743347._002805.pool.root.1
[2025-07-27 20:50:42] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 19:30 start_atlas.sh
[2025-07-27 20:50:42] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 19:30 shared
[2025-07-27 20:50:42] -rw-r--r--. 2 boincer umatlas    542897 Jul 27 19:30 input.tar.gz
[2025-07-27 20:50:42] -rw-r--r--. 1 boincer umatlas         0 Jul 27 19:30 boinc_lockfile
[2025-07-27 20:50:42] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 19:30 pandaJob.out
[2025-07-27 20:50:42] -rw-------. 1 boincer umatlas    980125 Jul 27 19:30 agis_schedconf.cvmfs.json
[2025-07-27 20:50:42] -rw-------. 1 boincer umatlas   1593052 Jul 27 19:30 agis_ddmendpoints.agis.ALL.json
[2025-07-27 20:50:42] drwx------. 4 boincer umatlas      4096 Jul 27 19:30 pilot3
[2025-07-27 20:50:42] -rw-r--r--. 1 boincer umatlas      6841 Jul 27 20:47 init_data.xml
[2025-07-27 20:50:42] -rw-------. 1 boincer umatlas 213651444 Jul 27 20:49 HITS.45743349._052440.pool.root.1
[2025-07-27 20:50:42] -rw-r--r--. 1 boincer umatlas       530 Jul 27 20:49 boinc_task_state.xml
[2025-07-27 20:50:42] -rw-------. 1 boincer umatlas      1031 Jul 27 20:49 memory_monitor_summary.json
[2025-07-27 20:50:42] -rw-------. 1 boincer umatlas    364077 Jul 27 20:50 log.45743349._052440.job.log.tgz.1
[2025-07-27 20:50:42] -rw-------. 1 boincer umatlas      7823 Jul 27 20:50 heartbeat.json
[2025-07-27 20:50:42] -rw-------. 1 boincer umatlas        95 Jul 27 20:50 pilot_heartbeat.json
[2025-07-27 20:50:42] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 20:50 boinc_mmap_file
[2025-07-27 20:50:42] -rw-r--r--. 1 boincer umatlas        27 Jul 27 20:50 wrapper_checkpoint.txt
[2025-07-27 20:50:42] -rw-------. 1 boincer umatlas       823 Jul 27 20:50 pilotlog.txt
[2025-07-27 20:50:42] -rw-------. 1 boincer umatlas    470895 Jul 27 20:50 log.45743349._052440.job.log.1
[2025-07-27 20:50:42] -rw-------. 1 boincer umatlas       357 Jul 27 20:50 output.list
[2025-07-27 20:50:42] -rw-r--r--. 1 boincer umatlas       620 Jul 27 20:50 runtime_log
[2025-07-27 20:50:42] -rw-------. 1 boincer umatlas    849920 Jul 27 20:50 result.tar.gz
[2025-07-27 20:50:42] -rw-r--r--. 1 boincer umatlas      8662 Jul 27 20:50 runtime_log.err
[2025-07-27 20:50:42] -rw-------. 1 boincer umatlas       653 Jul 27 20:50 KPINDmRlJ07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmEsVLDmkTgdom.diag
[2025-07-27 20:50:42] -rw-r--r--. 1 boincer umatlas     21680 Jul 27 20:50 stderr.txt
[2025-07-27 20:50:42] HITS file was successfully produced:
[2025-07-27 20:50:42] -rw-------. 1 boincer umatlas 213651444 Jul 27 20:49 shared/HITS.pool.root.1
[2025-07-27 20:50:42]  *** Contents of shared directory: ***
[2025-07-27 20:50:42] total 433768
[2025-07-27 20:50:42] -rw-r--r--. 2 boincer umatlas 229108685 Jul 27 19:30 ATLAS.root_0
[2025-07-27 20:50:42] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 19:30 start_atlas.sh
[2025-07-27 20:50:42] -rw-r--r--. 2 boincer umatlas    542897 Jul 27 19:30 input.tar.gz
[2025-07-27 20:50:42] -rw-------. 1 boincer umatlas 213651444 Jul 27 20:49 HITS.pool.root.1
[2025-07-27 20:50:42] -rw-------. 1 boincer umatlas    849920 Jul 27 20:50 result.tar.gz
20:50:43 (1357447): run_atlas exited; CPU time 50681.532028
20:50:43 (1357447): called boinc_finish(0)

</stderr_txt>
]]>

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