Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:06:08 (2012822): wrapper (7.7.26015): starting
18:06:08 (2012822): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 18:06:08] Arguments: --nthreads 8
[2025-07-27 18:06:08] Threads: 8
[2025-07-27 18:06:08] Checking for CVMFS
[2025-07-27 18:06:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 18:06:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 18:06:09] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 18:06:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 18:06:09] 2.13.1.0 704839 14700 159512 148826 3 11 32362058 40960000 10364 16776704 0 44579225 99.892 17315327 42285 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 18:06:09] CVMFS is ok
[2025-07-27 18:06:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 18:06:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 18:06:09] Further information can be found at the LHC@home message board.
[2025-07-27 18:06:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 18:06:09] Checking for apptainer binary...
[2025-07-27 18:06:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 18:06:09] Running /usr/bin/apptainer --version
[2025-07-27 18:06:09] apptainer version 1.4.1-1.el9
[2025-07-27 18:06:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 18:06:09] c-212-4.aglt2.org
[2025-07-27 18:06:09] apptainer works
[2025-07-27 18:06:09] Set ATHENA_PROC_NUMBER=8
[2025-07-27 18:06:09] Set ATHENA_CORE_NUMBER=8
[2025-07-27 18:06:09] Starting ATLAS job with PandaID=6747548411
[2025-07-27 18:06:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 19:29:10]  *** The last 200 lines of the pilot log: ***
[2025-07-27 19:29:10]  protocol_id=None
[2025-07-27 19:29:10]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 19:29:10]  replicas=None
[2025-07-27 19:29:10]  scope=mc23_13p6TeV
[2025-07-27 19:29:10]  status=None
[2025-07-27 19:29:10]  status_code=0
[2025-07-27 19:29:10]  storage_token=
[2025-07-27 19:29:10]  surl=/tmp/boinchome/slots/5/PanDA_Pilot-6747548411/log.45743349._052480.job.log.tgz.1
[2025-07-27 19:29:10]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d3/d5/log.45743349._052480.job.log.tgz.1
[2025-07-27 19:29:10]  workdir=None
[2025-07-27 19:29:10] ]
[2025-07-27 19:29:10] 2025-07-27 23:28:26,426 | INFO     | transferring file log.45743349._052480.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6747548411/log.45743349._052480.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 19:29:10] 2025-07-27 23:28:26,427 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6747548411/log.45743349._052480.job.log.tgz.1 /tmp/boinchome/slots/5/log.45743349._052480.job
[2025-07-27 19:29:10] 2025-07-27 23:28:26,462 | INFO     | adding to output.list: log.45743349._052480.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d3/d5/log.45743349._052480.job.log.tg
[2025-07-27 19:29:10] 2025-07-27 23:28:26,463 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 19:29:10] 2025-07-27 23:28:26,463 | INFO     | summary of transferred files:
[2025-07-27 19:29:10] 2025-07-27 23:28:26,463 | INFO     |  -- lfn=log.45743349._052480.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 19:29:10] 2025-07-27 23:28:26,464 | INFO     | stage-out finished correctly
[2025-07-27 19:29:10] 2025-07-27 23:28:29,685 | WARNING  | process 2023084 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 19:29:10] 2025-07-27 23:28:29,685 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6747548411/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 19:29:10] 2025-07-27 23:28:29,908 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 19:29:10] 2025-07-27 23:28:30,107 | INFO     | number of running child processes to parent process 2023084: 1
[2025-07-27 19:29:10] 2025-07-27 23:28:30,107 | INFO     | maximum number of monitored processes: 6
[2025-07-27 19:29:10] 2025-07-27 23:28:30,504 | INFO     | 4930s have passed since pilot start - server update state is 'RUNNING'
[2025-07-27 19:29:10] 2025-07-27 23:28:31,263 | INFO     | job 6747548411 has state=finished
[2025-07-27 19:29:10] 2025-07-27 23:28:31,263 | INFO     | preparing for final server update for job 6747548411 in state='finished'
[2025-07-27 19:29:10] 2025-07-27 23:28:31,264 | INFO     | this job has now completed (state=finished)
[2025-07-27 19:29:10] 2025-07-27 23:28:31,264 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 19:29:10] 2025-07-27 23:28:31,264 | INFO     | log transfer has been attempted: DONE
[2025-07-27 19:29:10] 2025-07-27 23:28:31,264 | INFO     | job 6747548411 has finished - writing final server update
[2025-07-27 19:29:10] 2025-07-27 23:28:31,264 | INFO     | total number of processed events: 400 (read)
[2025-07-27 19:29:10] 2025-07-27 23:28:31,265 | INFO     | executing command: lscpu
[2025-07-27 19:29:10] 2025-07-27 23:28:31,343 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 19:29:10] 2025-07-27 23:28:32,610 | INFO     | monitor loop #359: job 0:6747548411 is in state 'finished'
[2025-07-27 19:29:10] 2025-07-27 23:28:32,610 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 19:29:10] 2025-07-27 23:28:35,117 | INFO     | monitor loop #360: job 0:6747548411 is in state 'finished'
[2025-07-27 19:29:10] 2025-07-27 23:28:35,117 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 19:29:10] 2025-07-27 23:28:36,760 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 19:29:10] 2025-07-27 23:28:36,765 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3333.4894479166664
[2025-07-27 19:29:10] 2025-07-27 23:28:36,775 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6747548411/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 19:29:10] 2025-07-27 23:28:36,776 | INFO     | extracted standard info from prmon json
[2025-07-27 19:29:10] 2025-07-27 23:28:36,776 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 19:29:10] 2025-07-27 23:28:36,776 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 19:29:10] 2025-07-27 23:28:36,777 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 19:29:10] 2025-07-27 23:28:36,777 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 19:29:10] 2025-07-27 23:28:36,778 | INFO     | fitting pss+swap vs Time
[2025-07-27 19:29:10] 2025-07-27 23:28:36,778 | INFO     | sum of square deviations: 125630262.5
[2025-07-27 19:29:10] 2025-07-27 23:28:36,779 | INFO     | sum of deviations: -264723103.0000001
[2025-07-27 19:29:10] 2025-07-27 23:28:36,779 | INFO     | mean x: 1753656544.5
[2025-07-27 19:29:10] 2025-07-27 23:28:36,779 | INFO     | mean y: 2515220.2972972975
[2025-07-27 19:29:10] 2025-07-27 23:28:36,779 | INFO     | -- intersect: 3697750689.985962
[2025-07-27 19:29:10] 2025-07-27 23:28:36,779 | INFO     | intersect: 3697750689.985962
[2025-07-27 19:29:10] 2025-07-27 23:28:36,779 | INFO     | chi2: 0.027362591688986547
[2025-07-27 19:29:10] 2025-07-27 23:28:36,779 | INFO     | -- intersect: 3697750689.985962
[2025-07-27 19:29:10] 2025-07-27 23:28:36,779 | INFO     | current memory leak: -2.11 B/s (using 74 data points, chi2=0.03)
[2025-07-27 19:29:10] 2025-07-27 23:28:36,779 | INFO     | could have reported an average CPU frequency of 3299 MHz (6 samples)
[2025-07-27 19:29:10] 2025-07-27 23:28:36,779 | INFO     | ..............................
[2025-07-27 19:29:10] 2025-07-27 23:28:36,779 | INFO     | . Timing measurements:
[2025-07-27 19:29:10] 2025-07-27 23:28:36,779 | INFO     | . get job = 0 s
[2025-07-27 19:29:10] 2025-07-27 23:28:36,779 | INFO     | . initial setup = 2 s
[2025-07-27 19:29:10] 2025-07-27 23:28:36,779 | INFO     | . payload setup = 8 s
[2025-07-27 19:29:10] 2025-07-27 23:28:36,779 | INFO     | . stage-in = 0 s
[2025-07-27 19:29:10] 2025-07-27 23:28:36,779 | INFO     | . payload execution = 4894 s
[2025-07-27 19:29:10] 2025-07-27 23:28:36,780 | INFO     | . stage-out = 0 s
[2025-07-27 19:29:10] 2025-07-27 23:28:36,780 | INFO     | . log creation = 0 s
[2025-07-27 19:29:10] 2025-07-27 23:28:36,780 | INFO     | ..............................
[2025-07-27 19:29:10] 2025-07-27 23:28:36,842 | INFO     | 
[2025-07-27 19:29:10] 2025-07-27 23:28:36,843 | INFO     | job summary report
[2025-07-27 19:29:10] 2025-07-27 23:28:36,843 | INFO     | --------------------------------------------------
[2025-07-27 19:29:10] 2025-07-27 23:28:36,843 | INFO     | PanDA job id: 6747548411
[2025-07-27 19:29:10] 2025-07-27 23:28:36,843 | INFO     | task id: 45743349
[2025-07-27 19:29:10] 2025-07-27 23:28:36,843 | INFO     | errors: (none)
[2025-07-27 19:29:10] 2025-07-27 23:28:36,843 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 19:29:10] 2025-07-27 23:28:36,843 | INFO     | pilot state: finished 
[2025-07-27 19:29:10] 2025-07-27 23:28:36,843 | INFO     | transexitcode: 0
[2025-07-27 19:29:10] 2025-07-27 23:28:36,843 | INFO     | exeerrorcode: 0
[2025-07-27 19:29:10] 2025-07-27 23:28:36,843 | INFO     | exeerrordiag: 
[2025-07-27 19:29:10] 2025-07-27 23:28:36,843 | INFO     | exitcode: 0
[2025-07-27 19:29:10] 2025-07-27 23:28:36,843 | INFO     | exitmsg: OK
[2025-07-27 19:29:10] 2025-07-27 23:28:36,843 | INFO     | cpuconsumptiontime: 34954 s
[2025-07-27 19:29:10] 2025-07-27 23:28:36,843 | INFO     | nevents: 400
[2025-07-27 19:29:10] 2025-07-27 23:28:36,843 | INFO     | neventsw: 0
[2025-07-27 19:29:10] 2025-07-27 23:28:36,844 | INFO     | pid: 2023084
[2025-07-27 19:29:10] 2025-07-27 23:28:36,844 | INFO     | pgrp: 2023084
[2025-07-27 19:29:10] 2025-07-27 23:28:36,844 | INFO     | corecount: 8
[2025-07-27 19:29:10] 2025-07-27 23:28:36,844 | INFO     | event service: False
[2025-07-27 19:29:10] 2025-07-27 23:28:36,844 | INFO     | sizes: {0: 2396647, 1: 2397503, 7: 2397765, 12: 2397793, 4906: 2423934, 4907: 2433115, 4911: 2433115, 4918: 2433309}
[2025-07-27 19:29:10] 2025-07-27 23:28:36,844 | INFO     | --------------------------------------------------
[2025-07-27 19:29:10] 2025-07-27 23:28:36,844 | INFO     | 
[2025-07-27 19:29:10] 2025-07-27 23:28:36,844 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-07-27 19:29:10] 2025-07-27 23:28:36,877 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 19:29:10] 2025-07-27 23:28:36,877 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 19:29:10] 2025-07-27 23:28:36,877 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 19:29:10] 2025-07-27 23:28:36,878 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 19:29:10] 2025-07-27 23:28:36,878 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 19:29:10] 2025-07-27 23:28:36,878 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 19:29:10] 2025-07-27 23:28:36,878 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 19:29:10] 2025-07-27 23:28:36,878 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 19:29:10] 2025-07-27 23:28:36,878 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 19:29:10] 2025-07-27 23:28:36,878 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 19:29:10] 2025-07-27 23:28:36,878 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 19:29:10] 2025-07-27 23:28:36,878 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 19:29:10] 2025-07-27 23:28:36,878 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 19:29:10] 2025-07-27 23:28:36,878 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 19:29:10] 2025-07-27 23:28:36,878 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 19:29:10] 2025-07-27 23:28:36,878 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 19:29:10] 2025-07-27 23:28:36,879 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 19:29:10] 2025-07-27 23:28:36,879 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 19:29:10] 2025-07-27 23:28:36,879 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 19:29:10] 2025-07-27 23:28:36,879 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 19:29:10] 2025-07-27 23:28:36,879 | INFO     | job 6747548411 has completed (purged errors)
[2025-07-27 19:29:10] 2025-07-27 23:28:36,879 | INFO     | overall cleanup function is called
[2025-07-27 19:29:10] 2025-07-27 23:28:37,889 | INFO     | --- collectZombieJob: --- 10, [2023084]
[2025-07-27 19:29:10] 2025-07-27 23:28:37,889 | INFO     | zombie collector waiting for pid 2023084
[2025-07-27 19:29:10] 2025-07-27 23:28:37,889 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 19:29:10] 2025-07-27 23:28:37,890 | INFO     | collected zombie processes
[2025-07-27 19:29:10] 2025-07-27 23:28:37,890 | INFO     | will attempt to kill all subprocesses of pid=2023084
[2025-07-27 19:29:10] 2025-07-27 23:28:38,266 | INFO     | process IDs to be killed: [2023084] (in reverse order)
[2025-07-27 19:29:10] 2025-07-27 23:28:38,376 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 19:29:10] 2025-07-27 23:28:38,376 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 19:29:10] 2025-07-27 23:28:38,391 | INFO     | did not find any defunct processes belonging to 2023084
[2025-07-27 19:29:10] 2025-07-27 23:28:38,403 | INFO     | did not find any defunct processes belonging to 2023084
[2025-07-27 19:29:10] 2025-07-27 23:28:38,403 | INFO     | ready for new job
[2025-07-27 19:29:10] 2025-07-27 23:28:38,403 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 19:29:10] 2025-07-27 23:28:38,405 | INFO     | ***************************************
[2025-07-27 19:29:10] 2025-07-27 23:28:38,406 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 19:29:10] 2025-07-27 23:28:38,406 | INFO     | ***************************************
[2025-07-27 19:29:10] 2025-07-27 23:28:38,406 | INFO     | 
[2025-07-27 19:29:10] 2025-07-27 23:28:38,410 | INFO     | architecture information:
[2025-07-27 19:29:10] 2025-07-27 23:28:38,411 | INFO     | executing command: cat /etc/os-release
[2025-07-27 19:29:10] 2025-07-27 23:28:38,430 | INFO     | cat /etc/os-release:
[2025-07-27 19:29:10] NAME="CentOS Linux"
[2025-07-27 19:29:10] VERSION="7 (Core)"
[2025-07-27 19:29:10] ID="centos"
[2025-07-27 19:29:10] ID_LIKE="rhel fedora"
[2025-07-27 19:29:10] VERSION_ID="7"
[2025-07-27 19:29:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 19:29:10] ANSI_COLOR="0;31"
[2025-07-27 19:29:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 19:29:10] HOME_URL="https://www.centos.org/"
[2025-07-27 19:29:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 19:29:10] 
[2025-07-27 19:29:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 19:29:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 19:29:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 19:29:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 19:29:10] 
[2025-07-27 19:29:10] 2025-07-27 23:28:38,431 | INFO     | ***************************************
[2025-07-27 19:29:10] 2025-07-27 23:28:38,933 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-07-27 19:29:10] 2025-07-27 23:28:38,956 | INFO     | sufficient remaining disk space (124613820416 B)
[2025-07-27 19:29:10] 2025-07-27 23:28:38,956 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 19:29:10] 2025-07-27 23:28:38,956 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 19:29:10] 2025-07-27 23:28:38,956 | INFO     | update_server=False
[2025-07-27 19:29:10] 2025-07-27 23:28:38,957 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 19:29:10] 2025-07-27 23:28:38,957 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:29:10] 2025-07-27 23:28:38,957 | INFO     | aborting loop
[2025-07-27 19:29:10] 2025-07-27 23:28:39,031 | INFO     | all job control threads have been joined
[2025-07-27 19:29:10] 2025-07-27 23:28:39,226 | INFO     | all payload control threads have been joined
[2025-07-27 19:29:10] 2025-07-27 23:28:39,568 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 19:29:10] 2025-07-27 23:28:39,962 | INFO     | [job] retrieve thread has finished
[2025-07-27 19:29:10] 2025-07-27 23:28:39,964 | INFO     | [job] job monitor thread has finished
[2025-07-27 19:29:10] 2025-07-27 23:28:40,026 | INFO     | all data control threads have been joined
[2025-07-27 19:29:10] 2025-07-27 23:28:40,037 | INFO     | [job] control thread has finished
[2025-07-27 19:29:10] 2025-07-27 23:28:40,174 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 19:29:10] 2025-07-27 23:28:40,234 | INFO     | [payload] control thread has finished
[2025-07-27 19:29:10] 2025-07-27 23:28:40,340 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 19:29:10] 2025-07-27 23:28:40,506 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 19:29:10] 2025-07-27 23:28:40,709 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 19:29:10] 2025-07-27 23:28:40,841 | INFO     | [job] validate thread has finished
[2025-07-27 19:29:10] 2025-07-27 23:28:41,032 | INFO     | [data] control thread has finished
[2025-07-27 19:29:10] 2025-07-27 23:28:41,174 | INFO     | [payload] validate_post thread has finished
[2025-07-27 19:29:10] 2025-07-27 23:28:41,342 | INFO     | [payload] failed_post thread has finished
[2025-07-27 19:29:10] 2025-07-27 23:28:41,380 | INFO     | [data] copytool_in thread has finished
[2025-07-27 19:29:10] 2025-07-27 23:28:41,432 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 19:29:10] 2025-07-27 23:28:41,576 | INFO     | [data] copytool_out thread has finished
[2025-07-27 19:29:10] 2025-07-27 23:28:41,855 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:29:10] 2025-07-27 23:28:42,860 | INFO     | [job] queue monitor thread has finished
[2025-07-27 19:29:10] 2025-07-27 23:28:44,509 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 19:29:10] 2025-07-27 23:28:45,660 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140235516577600)>', '<ExcThread(monitor, started 140234876499712)>']
[2025-07-27 19:29:10] 2025-07-27 23:28:50,685 | INFO     | all workflow threads have been joined
[2025-07-27 19:29:10] 2025-07-27 23:28:50,686 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 19:29:10] 2025-07-27 23:28:50,686 | INFO     | traces error code: 0
[2025-07-27 19:29:10] 2025-07-27 23:28:50,686 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 19:29:10] 2025-07-27 23:29:10,028 | INFO     | PID=2016671 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 19:29:10] 2025-07-27 23:29:10,029 | INFO     | .. there are 14 such processes running
[2025-07-27 19:29:10] 2025-07-27 23:29:10,029 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 19:29:10] 2025-07-27 23:29:10,029 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 19:29:10] 2025-07-27 23:29:10,029 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 19:29:10] 2025-07-27 23:29:10,029 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 19:29:10] 2025-07-27 23:29:10,029 | INFO     | [monitor] control thread has ended
[2025-07-27 19:29:10] 2025-07-27 23:29:10,199 [wrapper] ==== pilot stdout END ====
[2025-07-27 19:29:10] 2025-07-27 23:29:10,206 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 19:29:10] 2025-07-27 23:29:10,211 [wrapper] pilotpid: 2016671
[2025-07-27 19:29:10] 2025-07-27 23:29:10,217 [wrapper] Pilot exit status: 0
[2025-07-27 19:29:10] 2025-07-27 23:29:10,234 [wrapper] pandaids: 6747548411
[2025-07-27 19:29:10] 2025-07-27 23:29:10,325 [wrapper] cleanup supervisor_pilot 2271362 2016672
[2025-07-27 19:29:10] 2025-07-27 23:29:10,329 [wrapper] Test setup, not cleaning
[2025-07-27 19:29:10] 2025-07-27 23:29:10,335 [wrapper] apfmon messages muted
[2025-07-27 19:29:10] 2025-07-27 23:29:10,341 [wrapper] ==== wrapper stdout END ====
[2025-07-27 19:29:10] 2025-07-27 23:29:10,346 [wrapper] ==== wrapper stderr END ====
[2025-07-27 19:29:10]  *** Error codes and diagnostics ***
[2025-07-27 19:29:10]     "exeErrorCode": 0,
[2025-07-27 19:29:10]     "exeErrorDiag": "",
[2025-07-27 19:29:10]     "pilotErrorCode": 0,
[2025-07-27 19:29:10]     "pilotErrorDiag": "",
[2025-07-27 19:29:10]  *** Listing of results directory ***
[2025-07-27 19:29:10] total 428240
[2025-07-27 19:29:10] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 12:02 pilot3.tar.gz
[2025-07-27 19:29:10] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 12:51 queuedata.json
[2025-07-27 19:29:10] -rwx------. 1 boincer umatlas     36292 Jul 27 12:53 runpilot2-wrapper.sh
[2025-07-27 19:29:10] -rw-r--r--. 1 boincer umatlas       100 Jul 27 18:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 19:29:10] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 18:06 run_atlas
[2025-07-27 19:29:10] -rw-r--r--. 1 boincer umatlas       105 Jul 27 18:06 job.xml
[2025-07-27 19:29:10] -rw-r--r--. 2 boincer umatlas 227540436 Jul 27 18:06 EVNT.45743347._002806.pool.root.1
[2025-07-27 19:29:10] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 18:06 start_atlas.sh
[2025-07-27 19:29:10] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 18:06 shared
[2025-07-27 19:29:10] -rw-r--r--. 2 boincer umatlas    542900 Jul 27 18:06 input.tar.gz
[2025-07-27 19:29:10] -rw-r--r--. 1 boincer umatlas         0 Jul 27 18:06 boinc_lockfile
[2025-07-27 19:29:10] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 18:06 pandaJob.out
[2025-07-27 19:29:10] -rw-------. 1 boincer umatlas    980117 Jul 27 18:06 agis_schedconf.cvmfs.json
[2025-07-27 19:29:10] -rw-------. 1 boincer umatlas   1593052 Jul 27 18:06 agis_ddmendpoints.agis.ALL.json
[2025-07-27 19:29:10] drwx------. 4 boincer umatlas      4096 Jul 27 18:06 pilot3
[2025-07-27 19:29:10] -rw-r--r--. 1 boincer umatlas      6945 Jul 27 19:22 init_data.xml
[2025-07-27 19:29:10] -rw-------. 1 boincer umatlas 205499719 Jul 27 19:27 HITS.45743349._052480.pool.root.1
[2025-07-27 19:29:10] -rw-r--r--. 1 boincer umatlas       529 Jul 27 19:28 boinc_task_state.xml
[2025-07-27 19:29:10] -rw-------. 1 boincer umatlas        95 Jul 27 19:28 pilot_heartbeat.json
[2025-07-27 19:29:10] -rw-------. 1 boincer umatlas      1025 Jul 27 19:28 memory_monitor_summary.json
[2025-07-27 19:29:10] -rw-------. 1 boincer umatlas    321801 Jul 27 19:28 log.45743349._052480.job.log.tgz.1
[2025-07-27 19:29:10] -rw-------. 1 boincer umatlas      7762 Jul 27 19:28 heartbeat.json
[2025-07-27 19:29:10] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 19:29 boinc_mmap_file
[2025-07-27 19:29:10] -rw-r--r--. 1 boincer umatlas        27 Jul 27 19:29 wrapper_checkpoint.txt
[2025-07-27 19:29:10] -rw-------. 1 boincer umatlas       823 Jul 27 19:29 pilotlog.txt
[2025-07-27 19:29:10] -rw-------. 1 boincer umatlas    480136 Jul 27 19:29 log.45743349._052480.job.log.1
[2025-07-27 19:29:10] -rw-------. 1 boincer umatlas       357 Jul 27 19:29 output.list
[2025-07-27 19:29:10] -rw-r--r--. 1 boincer umatlas       620 Jul 27 19:29 runtime_log
[2025-07-27 19:29:10] -rw-------. 1 boincer umatlas    819200 Jul 27 19:29 result.tar.gz
[2025-07-27 19:29:10] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 19:29 runtime_log.err
[2025-07-27 19:29:10] -rw-------. 1 boincer umatlas       650 Jul 27 19:29 rQYKDmZnJ07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmtsVLDmdiWHCn.diag
[2025-07-27 19:29:10] -rw-r--r--. 1 boincer umatlas     21876 Jul 27 19:29 stderr.txt
[2025-07-27 19:29:10] HITS file was successfully produced:
[2025-07-27 19:29:10] -rw-------. 1 boincer umatlas 205499719 Jul 27 19:27 shared/HITS.pool.root.1
[2025-07-27 19:29:10]  *** Contents of shared directory: ***
[2025-07-27 19:29:10] total 424248
[2025-07-27 19:29:10] -rw-r--r--. 2 boincer umatlas 227540436 Jul 27 18:06 ATLAS.root_0
[2025-07-27 19:29:10] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 18:06 start_atlas.sh
[2025-07-27 19:29:10] -rw-r--r--. 2 boincer umatlas    542900 Jul 27 18:06 input.tar.gz
[2025-07-27 19:29:10] -rw-------. 1 boincer umatlas 205499719 Jul 27 19:27 HITS.pool.root.1
[2025-07-27 19:29:10] -rw-------. 1 boincer umatlas    819200 Jul 27 19:29 result.tar.gz
19:29:12 (2012822): run_atlas exited; CPU time 35095.785793
19:29:12 (2012822): called boinc_finish(0)

</stderr_txt>
]]>

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