Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:50:48 (2188000): wrapper (7.7.26015): starting
10:50:48 (2188000): wrapper: running run_atlas (--nthreads 6)
[2025-07-28 10:50:48] Arguments: --nthreads 6
[2025-07-28 10:50:48] Threads: 6
[2025-07-28 10:50:48] Checking for CVMFS
[2025-07-28 10:50:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 10:50:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 10:50:48] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 10:50:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 10:50:48] 2.11.5.0 2723278 4577 74124 148830 2 57 52230558 52428800 101 130560 0 10145922 99.997 157833 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-07-28 10:50:48] CVMFS is ok
[2025-07-28 10:50:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 10:50:48] Checking for apptainer binary...
[2025-07-28 10:50:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 10:50:48] Running /usr/bin/apptainer --version
[2025-07-28 10:50:48] apptainer version 1.3.5-1.el9
[2025-07-28 10:50:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 10:50:48] testio008
[2025-07-28 10:50:48] apptainer works
[2025-07-28 10:50:48] Set ATHENA_PROC_NUMBER=6
[2025-07-28 10:50:48] Set ATHENA_CORE_NUMBER=6
[2025-07-28 10:50:48] Starting ATLAS job with PandaID=6747626394
[2025-07-28 10:50:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 12:16:05]  *** The last 200 lines of the pilot log: ***
[2025-07-28 12:16:05]  lfn=log.45743349._054496.job.log.tgz.1
[2025-07-28 12:16:05]  mtime=0
[2025-07-28 12:16:05]  protocol_id=None
[2025-07-28 12:16:05]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 12:16:05]  replicas=None
[2025-07-28 12:16:05]  scope=mc23_13p6TeV
[2025-07-28 12:16:05]  status=None
[2025-07-28 12:16:05]  status_code=0
[2025-07-28 12:16:05]  storage_token=
[2025-07-28 12:16:05]  surl=/var/lib/boinc/slots/2/PanDA_Pilot-6747626394/log.45743349._054496.job.log.tgz.1
[2025-07-28 12:16:05]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a5/46/log.45743349._054496.job.log.tgz.1
[2025-07-28 12:16:05]  workdir=None
[2025-07-28 12:16:05] ]
[2025-07-28 12:16:05] 2025-07-28 03:15:30,395 | INFO     | transferring file log.45743349._054496.job.log.tgz.1 from /var/lib/boinc/slots/2/PanDA_Pilot-6747626394/log.45743349._054496.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-07-28 12:16:05] 2025-07-28 03:15:30,396 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/2/PanDA_Pilot-6747626394/log.45743349._054496.job.log.tgz.1 /var/lib/boinc/slots/2/log.45743349._054496.job
[2025-07-28 12:16:05] 2025-07-28 03:15:30,406 | INFO     | adding to output.list: log.45743349._054496.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a5/46/log.45743349._054496.job.log.tg
[2025-07-28 12:16:05] 2025-07-28 03:15:30,406 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 12:16:05] 2025-07-28 03:15:30,406 | INFO     | summary of transferred files:
[2025-07-28 12:16:05] 2025-07-28 03:15:30,406 | INFO     |  -- lfn=log.45743349._054496.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 12:16:05] 2025-07-28 03:15:30,406 | INFO     | stage-out finished correctly
[2025-07-28 12:16:05] 2025-07-28 03:15:32,759 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 12:16:05] 2025-07-28 03:15:32,988 | INFO     | job 6747626394 has state=finished
[2025-07-28 12:16:05] 2025-07-28 03:15:32,988 | INFO     | preparing for final server update for job 6747626394 in state='finished'
[2025-07-28 12:16:05] 2025-07-28 03:15:32,988 | INFO     | this job has now completed (state=finished)
[2025-07-28 12:16:05] 2025-07-28 03:15:32,988 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 12:16:05] 2025-07-28 03:15:32,988 | INFO     | log transfer has been attempted: DONE
[2025-07-28 12:16:05] 2025-07-28 03:15:32,988 | INFO     | job 6747626394 has finished - writing final server update
[2025-07-28 12:16:05] 2025-07-28 03:15:32,988 | INFO     | total number of processed events: 400 (read)
[2025-07-28 12:16:05] 2025-07-28 03:15:32,988 | INFO     | executing command: lscpu
[2025-07-28 12:16:05] 2025-07-28 03:15:32,997 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 12:16:05] 2025-07-28 03:15:34,083 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 12:16:05] 2025-07-28 03:15:34,084 | INFO     | found 12 cores (12 cores per socket, 1 socket) , CPU MHz: 3910.0103000000004
[2025-07-28 12:16:05] 2025-07-28 03:15:34,085 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6747626394/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 12:16:05] 2025-07-28 03:15:34,086 | INFO     | extracted standard info from prmon json
[2025-07-28 12:16:05] 2025-07-28 03:15:34,086 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 12:16:05] 2025-07-28 03:15:34,086 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 12:16:05] 2025-07-28 03:15:34,086 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 12:16:05] 2025-07-28 03:15:34,086 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 12:16:05] 2025-07-28 03:15:34,086 | INFO     | fitting pss+swap vs Time
[2025-07-28 12:16:05] 2025-07-28 03:15:34,087 | INFO     | sum of square deviations: 136095575.0
[2025-07-28 12:16:05] 2025-07-28 03:15:34,087 | INFO     | sum of deviations: 15069145766.499998
[2025-07-28 12:16:05] 2025-07-28 03:15:34,087 | INFO     | mean x: 1753670062.5
[2025-07-28 12:16:05] 2025-07-28 03:15:34,087 | INFO     | mean y: 2357563.6184210526
[2025-07-28 12:16:05] 2025-07-28 03:15:34,087 | INFO     | -- intersect: -194172286234.7539
[2025-07-28 12:16:05] 2025-07-28 03:15:34,087 | INFO     | intersect: -194172286234.7539
[2025-07-28 12:16:05] 2025-07-28 03:15:34,087 | INFO     | chi2: 1.397159393672966
[2025-07-28 12:16:05] 2025-07-28 03:15:34,087 | INFO     | -- intersect: -194172286234.7539
[2025-07-28 12:16:05] 2025-07-28 03:15:34,087 | INFO     | current memory leak: 110.72 B/s (using 76 data points, chi2=1.40)
[2025-07-28 12:16:05] 2025-07-28 03:15:34,087 | INFO     | could have reported an average CPU frequency of 3708 MHz (6 samples)
[2025-07-28 12:16:05] 2025-07-28 03:15:34,087 | INFO     | ..............................
[2025-07-28 12:16:05] 2025-07-28 03:15:34,087 | INFO     | . Timing measurements:
[2025-07-28 12:16:05] 2025-07-28 03:15:34,087 | INFO     | . get job = 0 s
[2025-07-28 12:16:05] 2025-07-28 03:15:34,087 | INFO     | . initial setup = 4 s
[2025-07-28 12:16:05] 2025-07-28 03:15:34,087 | INFO     | . payload setup = 1 s
[2025-07-28 12:16:05] 2025-07-28 03:15:34,087 | INFO     | . stage-in = 0 s
[2025-07-28 12:16:05] 2025-07-28 03:15:34,087 | INFO     | . payload execution = 5058 s
[2025-07-28 12:16:05] 2025-07-28 03:15:34,087 | INFO     | . stage-out = 0 s
[2025-07-28 12:16:05] 2025-07-28 03:15:34,087 | INFO     | . log creation = 0 s
[2025-07-28 12:16:05] 2025-07-28 03:15:34,087 | INFO     | ..............................
[2025-07-28 12:16:05] 2025-07-28 03:15:34,112 | INFO     | 
[2025-07-28 12:16:05] 2025-07-28 03:15:34,112 | INFO     | job summary report
[2025-07-28 12:16:05] 2025-07-28 03:15:34,112 | INFO     | --------------------------------------------------
[2025-07-28 12:16:05] 2025-07-28 03:15:34,112 | INFO     | PanDA job id: 6747626394
[2025-07-28 12:16:05] 2025-07-28 03:15:34,112 | INFO     | task id: 45743349
[2025-07-28 12:16:05] 2025-07-28 03:15:34,112 | INFO     | errors: (none)
[2025-07-28 12:16:05] 2025-07-28 03:15:34,112 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 12:16:05] 2025-07-28 03:15:34,112 | INFO     | pilot state: finished 
[2025-07-28 12:16:05] 2025-07-28 03:15:34,112 | INFO     | transexitcode: 0
[2025-07-28 12:16:05] 2025-07-28 03:15:34,112 | INFO     | exeerrorcode: 0
[2025-07-28 12:16:05] 2025-07-28 03:15:34,112 | INFO     | exeerrordiag: 
[2025-07-28 12:16:05] 2025-07-28 03:15:34,112 | INFO     | exitcode: 0
[2025-07-28 12:16:05] 2025-07-28 03:15:34,112 | INFO     | exitmsg: OK
[2025-07-28 12:16:05] 2025-07-28 03:15:34,112 | INFO     | cpuconsumptiontime: 25959 s
[2025-07-28 12:16:05] 2025-07-28 03:15:34,112 | INFO     | nevents: 400
[2025-07-28 12:16:05] 2025-07-28 03:15:34,112 | INFO     | neventsw: 0
[2025-07-28 12:16:05] 2025-07-28 03:15:34,112 | INFO     | pid: 2213657
[2025-07-28 12:16:05] 2025-07-28 03:15:34,112 | INFO     | pgrp: 2213657
[2025-07-28 12:16:05] 2025-07-28 03:15:34,112 | INFO     | corecount: 6
[2025-07-28 12:16:05] 2025-07-28 03:15:34,112 | INFO     | event service: False
[2025-07-28 12:16:05] 2025-07-28 03:15:34,112 | INFO     | sizes: {0: 2397475, 1: 2397737, 11: 2397765, 5063: 2433120, 5066: 2433120, 5067: 2433314}
[2025-07-28 12:16:05] 2025-07-28 03:15:34,112 | INFO     | --------------------------------------------------
[2025-07-28 12:16:05] 2025-07-28 03:15:34,112 | INFO     | 
[2025-07-28 12:16:05] 2025-07-28 03:15:34,112 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-07-28 12:16:05] 2025-07-28 03:15:34,118 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 12:16:05] 2025-07-28 03:15:34,118 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 12:16:05] 2025-07-28 03:15:34,118 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 12:16:05] 2025-07-28 03:15:34,118 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 12:16:05] 2025-07-28 03:15:34,118 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 12:16:05] 2025-07-28 03:15:34,118 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 12:16:05] 2025-07-28 03:15:34,118 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 12:16:05] 2025-07-28 03:15:34,118 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 12:16:05] 2025-07-28 03:15:34,119 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 12:16:05] 2025-07-28 03:15:34,119 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 12:16:05] 2025-07-28 03:15:34,119 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 12:16:05] 2025-07-28 03:15:34,119 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 12:16:05] 2025-07-28 03:15:34,119 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 12:16:05] 2025-07-28 03:15:34,119 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 12:16:05] 2025-07-28 03:15:34,119 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 12:16:05] 2025-07-28 03:15:34,119 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 12:16:05] 2025-07-28 03:15:34,119 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 12:16:05] 2025-07-28 03:15:34,119 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 12:16:05] 2025-07-28 03:15:34,119 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 12:16:05] 2025-07-28 03:15:34,119 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 12:16:05] 2025-07-28 03:15:34,119 | INFO     | job 6747626394 has completed (purged errors)
[2025-07-28 12:16:05] 2025-07-28 03:15:34,119 | INFO     | overall cleanup function is called
[2025-07-28 12:16:05] 2025-07-28 03:15:35,124 | INFO     | --- collectZombieJob: --- 10, [2213657]
[2025-07-28 12:16:05] 2025-07-28 03:15:35,125 | INFO     | zombie collector waiting for pid 2213657
[2025-07-28 12:16:05] 2025-07-28 03:15:35,125 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 12:16:05] 2025-07-28 03:15:35,125 | INFO     | collected zombie processes
[2025-07-28 12:16:05] 2025-07-28 03:15:35,125 | INFO     | will attempt to kill all subprocesses of pid=2213657
[2025-07-28 12:16:05] 2025-07-28 03:15:35,144 | INFO     | process IDs to be killed: [2213657] (in reverse order)
[2025-07-28 12:16:05] 2025-07-28 03:15:35,160 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 12:16:05] 2025-07-28 03:15:35,160 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 12:16:05] 2025-07-28 03:15:35,161 | INFO     | did not find any defunct processes belonging to 2213657
[2025-07-28 12:16:05] 2025-07-28 03:15:35,161 | INFO     | did not find any defunct processes belonging to 2213657
[2025-07-28 12:16:05] 2025-07-28 03:15:35,161 | INFO     | ready for new job
[2025-07-28 12:16:05] 2025-07-28 03:15:35,161 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 12:16:05] 2025-07-28 03:15:35,162 | INFO     | ***************************************
[2025-07-28 12:16:05] 2025-07-28 03:15:35,162 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 12:16:05] 2025-07-28 03:15:35,162 | INFO     | ***************************************
[2025-07-28 12:16:05] 2025-07-28 03:15:35,162 | INFO     | 
[2025-07-28 12:16:05] 2025-07-28 03:15:35,162 | INFO     | architecture information:
[2025-07-28 12:16:05] 2025-07-28 03:15:35,162 | INFO     | executing command: cat /etc/os-release
[2025-07-28 12:16:05] 2025-07-28 03:15:35,166 | INFO     | cat /etc/os-release:
[2025-07-28 12:16:05] NAME="CentOS Linux"
[2025-07-28 12:16:05] VERSION="7 (Core)"
[2025-07-28 12:16:05] ID="centos"
[2025-07-28 12:16:05] ID_LIKE="rhel fedora"
[2025-07-28 12:16:05] VERSION_ID="7"
[2025-07-28 12:16:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 12:16:05] ANSI_COLOR="0;31"
[2025-07-28 12:16:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 12:16:05] HOME_URL="https://www.centos.org/"
[2025-07-28 12:16:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 12:16:05] 
[2025-07-28 12:16:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 12:16:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 12:16:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 12:16:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 12:16:05] 
[2025-07-28 12:16:05] 2025-07-28 03:15:35,166 | INFO     | ***************************************
[2025-07-28 12:16:05] 2025-07-28 03:15:35,669 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-07-28 12:16:05] 2025-07-28 03:15:35,674 | INFO     | sufficient remaining disk space (271189016576 B)
[2025-07-28 12:16:05] 2025-07-28 03:15:35,674 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 12:16:05] 2025-07-28 03:15:35,674 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 12:16:05] 2025-07-28 03:15:35,674 | INFO     | update_server=False
[2025-07-28 12:16:05] 2025-07-28 03:15:35,674 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 12:16:05] 2025-07-28 03:15:35,674 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 12:16:05] 2025-07-28 03:15:35,934 | INFO     | all data control threads have been joined
[2025-07-28 12:16:05] 2025-07-28 03:15:35,937 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 12:16:05] 2025-07-28 03:15:36,001 | INFO     | all payload control threads have been joined
[2025-07-28 12:16:05] 2025-07-28 03:15:36,219 | WARNING  | process 2213657 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 12:16:05] 2025-07-28 03:15:36,223 | INFO     | all job control threads have been joined
[2025-07-28 12:16:05] 2025-07-28 03:15:36,236 | INFO     | using path: /var/lib/boinc/slots/2/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 12:16:05] 2025-07-28 03:15:36,255 | INFO     | number of running child processes to parent process 2213657: 1
[2025-07-28 12:16:05] 2025-07-28 03:15:36,255 | INFO     | maximum number of monitored processes: 6
[2025-07-28 12:16:05] 2025-07-28 03:15:36,255 | INFO     | aborting job monitoring since job object (job id=6747626394) has expired
[2025-07-28 12:16:05] 2025-07-28 03:15:36,255 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 12:16:05] 2025-07-28 03:15:36,255 | INFO     | will abort loop
[2025-07-28 12:16:05] 2025-07-28 03:15:36,679 | INFO     | [job] queue monitor thread has finished
[2025-07-28 12:16:05] 2025-07-28 03:15:36,679 | INFO     | [job] retrieve thread has finished
[2025-07-28 12:16:05] 2025-07-28 03:15:36,798 | INFO     | [data] copytool_in thread has finished
[2025-07-28 12:16:05] 2025-07-28 03:15:36,939 | INFO     | [data] control thread has finished
[2025-07-28 12:16:05] 2025-07-28 03:15:37,006 | INFO     | [payload] control thread has finished
[2025-07-28 12:16:05] 2025-07-28 03:15:37,098 | INFO     | [job] validate thread has finished
[2025-07-28 12:16:05] 2025-07-28 03:15:37,146 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 12:16:05] 2025-07-28 03:15:37,229 | INFO     | [job] control thread has finished
[2025-07-28 12:16:05] 2025-07-28 03:15:37,262 | INFO     | [job] job monitor thread has finished
[2025-07-28 12:16:05] 2025-07-28 03:15:37,293 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 12:16:05] 2025-07-28 03:15:37,551 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 12:16:05] 2025-07-28 03:15:37,570 | INFO     | [payload] validate_post thread has finished
[2025-07-28 12:16:05] 2025-07-28 03:15:37,940 | INFO     | [payload] failed_post thread has finished
[2025-07-28 12:16:05] 2025-07-28 03:15:37,942 | INFO     | [data] copytool_out thread has finished
[2025-07-28 12:16:05] 2025-07-28 03:15:38,786 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 12:16:05] 2025-07-28 03:15:42,790 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 12:16:05] 2025-07-28 03:15:46,485 | INFO     | job.realtimelogging is not enabled
[2025-07-28 12:16:05] 2025-07-28 03:15:47,490 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 12:16:05] 2025-07-28 03:15:49,274 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139628570928960)>', '<ExcThread(monitor, started 139628069758720)>']
[2025-07-28 12:16:05] 2025-07-28 03:15:54,299 | INFO     | all workflow threads have been joined
[2025-07-28 12:16:05] 2025-07-28 03:15:54,299 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 12:16:05] 2025-07-28 03:15:54,299 | INFO     | traces error code: 0
[2025-07-28 12:16:05] 2025-07-28 03:15:54,299 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 12:16:05] 2025-07-28 03:16:05,234 | INFO     | PID=2193250 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 12:16:05] 2025-07-28 03:16:05,234 | INFO     | .. there are 3 such processes running
[2025-07-28 12:16:05] 2025-07-28 03:16:05,234 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 12:16:05] 2025-07-28 03:16:05,234 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 12:16:05] 2025-07-28 03:16:05,234 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 12:16:05] 2025-07-28 03:16:05,234 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 12:16:05] 2025-07-28 03:16:05,234 | CRITICAL | thread 'MainThread' is not alive
[2025-07-28 12:16:05] 2025-07-28 03:16:05,234 | INFO     | [monitor] control thread has ended
[2025-07-28 12:16:05] 2025-07-28 03:16:05,264 [wrapper] ==== pilot stdout END ====
[2025-07-28 12:16:05] 2025-07-28 03:16:05,266 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 12:16:05] 2025-07-28 03:16:05,267 [wrapper] pilotpid: 2193250
[2025-07-28 12:16:05] 2025-07-28 03:16:05,268 [wrapper] Pilot exit status: 0
[2025-07-28 12:16:05] 2025-07-28 03:16:05,271 [wrapper] pandaids: 6747626394
[2025-07-28 12:16:05] 2025-07-28 03:16:05,278 [wrapper] cleanup supervisor_pilot 2252186 2193251
[2025-07-28 12:16:05] 2025-07-28 03:16:05,279 [wrapper] Test setup, not cleaning
[2025-07-28 12:16:05] 2025-07-28 03:16:05,280 [wrapper] apfmon messages muted
[2025-07-28 12:16:05] 2025-07-28 03:16:05,281 [wrapper] ==== wrapper stdout END ====
[2025-07-28 12:16:05] 2025-07-28 03:16:05,282 [wrapper] ==== wrapper stderr END ====
[2025-07-28 12:16:05]  *** Error codes and diagnostics ***
[2025-07-28 12:16:05]     "exeErrorCode": 0,
[2025-07-28 12:16:05]     "exeErrorDiag": "",
[2025-07-28 12:16:05]     "pilotErrorCode": 0,
[2025-07-28 12:16:05]     "pilotErrorDiag": "",
[2025-07-28 12:16:05]  *** Listing of results directory ***
[2025-07-28 12:16:05] total 353520
[2025-07-28 12:16:05] -rw-r--r--. 1 boinc boinc    530466 Jul 28 04:12 pilot3.tar.gz
[2025-07-28 12:16:05] -rw-r--r--. 1 boinc boinc      5112 Jul 28 04:20 queuedata.json
[2025-07-28 12:16:05] -rwx------. 1 boinc boinc     36292 Jul 28 04:21 runpilot2-wrapper.sh
[2025-07-28 12:16:05] -rw-r--r--. 1 boinc boinc       100 Jul 28 10:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 12:16:05] -rwxr-xr-x. 1 boinc boinc      7986 Jul 28 10:50 run_atlas
[2025-07-28 12:16:05] -rw-r--r--. 1 boinc boinc       105 Jul 28 10:50 job.xml
[2025-07-28 12:16:05] -rw-r--r--. 2 boinc boinc     15095 Jul 28 10:50 start_atlas.sh
[2025-07-28 12:16:05] drwxrwx--x. 2 boinc boinc        68 Jul 28 10:50 shared
[2025-07-28 12:16:05] -rw-r--r--. 2 boinc boinc    542898 Jul 28 10:50 input.tar.gz
[2025-07-28 12:16:05] -rw-r--r--. 1 boinc boinc      9508 Jul 28 10:50 init_data.xml
[2025-07-28 12:16:05] -rw-r--r--. 2 boinc boinc 145062868 Jul 28 10:50 EVNT.45743347._002953.pool.root.1
[2025-07-28 12:16:05] -rw-r--r--. 1 boinc boinc         0 Jul 28 10:50 boinc_lockfile
[2025-07-28 12:16:05] -rw-r--r--. 1 boinc boinc      2563 Jul 28 10:50 pandaJob.out
[2025-07-28 12:16:05] -rw-------. 1 boinc boinc    980125 Jul 28 10:50 agis_schedconf.cvmfs.json
[2025-07-28 12:16:05] -rw-------. 1 boinc boinc   1593052 Jul 28 10:50 agis_ddmendpoints.agis.ALL.json
[2025-07-28 12:16:05] drwx------. 4 boinc boinc      4096 Jul 28 10:50 pilot3
[2025-07-28 12:16:05] -rw-------. 1 boinc boinc 211540220 Jul 28 12:15 HITS.45743349._054496.pool.root.1
[2025-07-28 12:16:05] -rw-------. 1 boinc boinc      1021 Jul 28 12:15 memory_monitor_summary.json
[2025-07-28 12:16:05] -rw-------. 1 boinc boinc    267779 Jul 28 12:15 log.45743349._054496.job.log.tgz.1
[2025-07-28 12:16:05] -rw-------. 1 boinc boinc        95 Jul 28 12:15 pilot_heartbeat.json
[2025-07-28 12:16:05] -rw-------. 1 boinc boinc      7762 Jul 28 12:15 heartbeat.json
[2025-07-28 12:16:05] -rw-r--r--. 1 boinc boinc      8192 Jul 28 12:15 boinc_mmap_file
[2025-07-28 12:16:05] -rw-r--r--. 1 boinc boinc        27 Jul 28 12:15 wrapper_checkpoint.txt
[2025-07-28 12:16:05] -rw-r--r--. 1 boinc boinc       529 Jul 28 12:15 boinc_task_state.xml
[2025-07-28 12:16:05] -rw-------. 1 boinc boinc       892 Jul 28 12:16 pilotlog.txt
[2025-07-28 12:16:05] -rw-------. 1 boinc boinc    497992 Jul 28 12:16 log.45743349._054496.job.log.1
[2025-07-28 12:16:05] -rw-------. 1 boinc boinc       357 Jul 28 12:16 output.list
[2025-07-28 12:16:05] -rw-r--r--. 1 boinc boinc       620 Jul 28 12:16 runtime_log
[2025-07-28 12:16:05] -rw-------. 1 boinc boinc    788480 Jul 28 12:16 result.tar.gz
[2025-07-28 12:16:05] -rw-r--r--. 1 boinc boinc      8618 Jul 28 12:16 runtime_log.err
[2025-07-28 12:16:05] -rw-------. 1 boinc boinc       642 Jul 28 12:16 rsCMDmC7L07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQDWLDm50iIKo.diag
[2025-07-28 12:16:05] -rw-r--r--. 1 boinc boinc     21273 Jul 28 12:16 stderr.txt
[2025-07-28 12:16:05] HITS file was successfully produced:
[2025-07-28 12:16:05] -rw-------. 1 boinc boinc 211540220 Jul 28 12:15 shared/HITS.pool.root.1
[2025-07-28 12:16:05]  *** Contents of shared directory: ***
[2025-07-28 12:16:05] total 349568
[2025-07-28 12:16:05] -rw-r--r--. 2 boinc boinc     15095 Jul 28 10:50 start_atlas.sh
[2025-07-28 12:16:05] -rw-r--r--. 2 boinc boinc    542898 Jul 28 10:50 input.tar.gz
[2025-07-28 12:16:05] -rw-r--r--. 2 boinc boinc 145062868 Jul 28 10:50 ATLAS.root_0
[2025-07-28 12:16:05] -rw-------. 1 boinc boinc 211540220 Jul 28 12:15 HITS.pool.root.1
[2025-07-28 12:16:05] -rw-------. 1 boinc boinc    788480 Jul 28 12:16 result.tar.gz
12:16:06 (2188000): run_atlas exited; CPU time 25991.786112
12:16:06 (2188000): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN