Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:05:35 (3120644): wrapper (7.7.26015): starting
12:05:35 (3120644): wrapper: running run_atlas (--nthreads 3)
[2025-07-28 12:05:35] Arguments: --nthreads 3
[2025-07-28 12:05:35] Threads: 3
[2025-07-28 12:05:35] Checking for CVMFS
[2025-07-28 12:05:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 12:05:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 12:05:35] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 12:05:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 12:05:35] 2.9.2.0 1598666 5375 84228 148843 1 57 34551338 36864000 0 130560 0 4020933 99.990 189676 1753 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-28 12:05:35] CVMFS is ok
[2025-07-28 12:05:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 12:05:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 12:05:35] Further information can be found at the LHC@home message board.
[2025-07-28 12:05:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 12:05:35] Checking for apptainer binary...
[2025-07-28 12:05:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 12:05:35] Running /usr/bin/apptainer --version
[2025-07-28 12:05:35] apptainer version 1.4.1-1.1
[2025-07-28 12:05:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 12:05:35] belleA253
[2025-07-28 12:05:35] apptainer works
[2025-07-28 12:05:35] Set ATHENA_PROC_NUMBER=3
[2025-07-28 12:05:35] Set ATHENA_CORE_NUMBER=3
[2025-07-28 12:05:35] Starting ATLAS job with PandaID=6747544634
[2025-07-28 12:05:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
12:54:07 (3145342): wrapper (7.7.26015): starting
12:54:07 (3145342): wrapper: running run_atlas (--nthreads 3)
[2025-07-28 12:54:07] Arguments: --nthreads 3
[2025-07-28 12:54:07] Threads: 3
[2025-07-28 12:54:07] This job has been restarted, cleaning up previous attempt
[2025-07-28 12:54:07] Checking for CVMFS
[2025-07-28 12:54:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 12:54:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 12:54:07] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 12:54:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 12:54:07] 2.9.2.0 1598666 5423 83372 148845 0 18 34564916 36864001 0 130560 0 4076100 99.990 192279 1775 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-28 12:54:07] CVMFS is ok
[2025-07-28 12:54:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 12:54:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 12:54:07] Further information can be found at the LHC@home message board.
[2025-07-28 12:54:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 12:54:07] Checking for apptainer binary...
[2025-07-28 12:54:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 12:54:07] Running /usr/bin/apptainer --version
[2025-07-28 12:54:07] apptainer version 1.4.1-1.1
[2025-07-28 12:54:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 12:54:07] belleA253
[2025-07-28 12:54:07] apptainer works
[2025-07-28 12:54:07] Set ATHENA_PROC_NUMBER=3
[2025-07-28 12:54:07] Set ATHENA_CORE_NUMBER=3
[2025-07-28 12:54:07] Starting ATLAS job with PandaID=6747544634
[2025-07-28 12:54:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 15:10:29]  *** The last 200 lines of the pilot log: ***
[2025-07-28 15:10:29] 2025-07-28 13:09:57,242 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 15:10:29] 2025-07-28 13:09:57,242 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 15:10:29] 2025-07-28 13:09:57,243 | INFO     | fitting pss+swap vs Time
[2025-07-28 15:10:29] 2025-07-28 13:09:57,243 | INFO     | sum of square deviations: 746051197.5
[2025-07-28 15:10:29] 2025-07-28 13:09:57,243 | INFO     | sum of deviations: -16325996171.500004
[2025-07-28 15:10:29] 2025-07-28 13:09:57,243 | INFO     | mean x: 1753704130.5
[2025-07-28 15:10:29] 2025-07-28 13:09:57,243 | INFO     | mean y: 2367470.186567164
[2025-07-28 15:10:29] 2025-07-28 13:09:57,243 | INFO     | -- intersect: 38379045929.29023
[2025-07-28 15:10:29] 2025-07-28 13:09:57,243 | INFO     | intersect: 38379045929.29023
[2025-07-28 15:10:29] 2025-07-28 13:09:57,244 | INFO     | chi2: 2.2451807412792153
[2025-07-28 15:10:29] 2025-07-28 13:09:57,244 | INFO     | sum of square deviations: 665612480.0
[2025-07-28 15:10:29] 2025-07-28 13:09:57,244 | INFO     | sum of deviations: -8260534539.000001
[2025-07-28 15:10:29] 2025-07-28 13:09:57,244 | INFO     | mean x: 1753703978.0
[2025-07-28 15:10:29] 2025-07-28 13:09:57,244 | INFO     | mean y: 2382324.19379845
[2025-07-28 15:10:29] 2025-07-28 13:09:57,244 | INFO     | -- intersect: 21766596062.26959
[2025-07-28 15:10:29] 2025-07-28 13:09:57,244 | INFO     | intersect: 21766596062.26959
[2025-07-28 15:10:29] 2025-07-28 13:09:57,244 | INFO     | chi2: 1.6119002943692766
[2025-07-28 15:10:29] 2025-07-28 13:09:57,244 | INFO     | current chi2=1.6119002943692766 (change=28.20621232253758 %)
[2025-07-28 15:10:29] 2025-07-28 13:09:57,244 | INFO     | sum of square deviations: 591173875.0
[2025-07-28 15:10:29] 2025-07-28 13:09:57,244 | INFO     | sum of deviations: -7917062571.0
[2025-07-28 15:10:29] 2025-07-28 13:09:57,244 | INFO     | mean x: 1753703825.5
[2025-07-28 15:10:29] 2025-07-28 13:09:57,244 | INFO     | mean y: 2383029.9032258065
[2025-07-28 15:10:29] 2025-07-28 13:09:57,244 | INFO     | -- intersect: 23488168692.345707
[2025-07-28 15:10:29] 2025-07-28 13:09:57,244 | INFO     | intersect: 23488168692.345707
[2025-07-28 15:10:29] 2025-07-28 13:09:57,245 | INFO     | chi2: 1.6079040211833397
[2025-07-28 15:10:29] 2025-07-28 13:09:57,245 | INFO     | current chi2=1.6079040211833397 (change=0.2479231004483798 %)
[2025-07-28 15:10:29] 2025-07-28 13:09:57,245 | INFO     | right removable region: 123
[2025-07-28 15:10:29] 2025-07-28 13:09:57,245 | INFO     | sum of square deviations: 665612480.0
[2025-07-28 15:10:29] 2025-07-28 13:09:57,245 | INFO     | sum of deviations: -32132572523.999996
[2025-07-28 15:10:29] 2025-07-28 13:09:57,245 | INFO     | mean x: 1753704283.0
[2025-07-28 15:10:29] 2025-07-28 13:09:57,245 | INFO     | mean y: 2396713.7596899224
[2025-07-28 15:10:29] 2025-07-28 13:09:57,245 | INFO     | -- intersect: 84662813626.5359
[2025-07-28 15:10:29] 2025-07-28 13:09:57,245 | INFO     | intersect: 84662813626.5359
[2025-07-28 15:10:29] 2025-07-28 13:09:57,245 | INFO     | chi2: 0.8290190362249119
[2025-07-28 15:10:29] 2025-07-28 13:09:57,245 | INFO     | current chi2=0.8290190362249119 (change=63.075621441836816 %)
[2025-07-28 15:10:29] 2025-07-28 13:09:57,245 | INFO     | sum of square deviations: 591173875.0
[2025-07-28 15:10:29] 2025-07-28 13:09:57,245 | INFO     | sum of deviations: -26116797084.5
[2025-07-28 15:10:29] 2025-07-28 13:09:57,245 | INFO     | mean x: 1753704435.5
[2025-07-28 15:10:29] 2025-07-28 13:09:57,245 | INFO     | mean y: 2384375.89516129
[2025-07-28 15:10:29] 2025-07-28 13:09:57,245 | INFO     | -- intersect: 77477294592.6924
[2025-07-28 15:10:29] 2025-07-28 13:09:57,246 | INFO     | intersect: 77477294592.6924
[2025-07-28 15:10:29] 2025-07-28 13:09:57,246 | INFO     | chi2: 0.8091758716260875
[2025-07-28 15:10:29] 2025-07-28 13:09:57,246 | INFO     | current chi2=0.8091758716260875 (change=2.3935716469411656 %)
[2025-07-28 15:10:29] 2025-07-28 13:09:57,246 | INFO     | left removable region: 20
[2025-07-28 15:10:29] 2025-07-28 13:09:57,246 | INFO     | sum of square deviations: 338804492.0
[2025-07-28 15:10:29] 2025-07-28 13:09:57,246 | INFO     | sum of deviations: -8331551959.000001
[2025-07-28 15:10:29] 2025-07-28 13:09:57,246 | INFO     | mean x: 1753704405.0
[2025-07-28 15:10:29] 2025-07-28 13:09:57,246 | INFO     | mean y: 2377569.349514563
[2025-07-28 15:10:29] 2025-07-28 13:09:57,246 | INFO     | -- intersect: 43127777958.03351
[2025-07-28 15:10:29] 2025-07-28 13:09:57,246 | INFO     | intersect: 43127777958.03351
[2025-07-28 15:10:29] 2025-07-28 13:09:57,246 | INFO     | chi2: 0.08116143344703737
[2025-07-28 15:10:29] 2025-07-28 13:09:57,246 | INFO     | -- intersect: 43127777958.03351
[2025-07-28 15:10:29] 2025-07-28 13:09:57,246 | INFO     | current memory leak: -24.59 B/s (using 103 data points, chi2=0.08)
[2025-07-28 15:10:29] 2025-07-28 13:09:57,246 | INFO     | could have reported an average CPU frequency of 3904 MHz (8 samples)
[2025-07-28 15:10:29] 2025-07-28 13:09:57,246 | INFO     | ..............................
[2025-07-28 15:10:29] 2025-07-28 13:09:57,246 | INFO     | . Timing measurements:
[2025-07-28 15:10:29] 2025-07-28 13:09:57,246 | INFO     | . get job = 0 s
[2025-07-28 15:10:29] 2025-07-28 13:09:57,246 | INFO     | . initial setup = 0 s
[2025-07-28 15:10:29] 2025-07-28 13:09:57,246 | INFO     | . payload setup = 3 s
[2025-07-28 15:10:29] 2025-07-28 13:09:57,246 | INFO     | . stage-in = 0 s
[2025-07-28 15:10:29] 2025-07-28 13:09:57,246 | INFO     | . payload execution = 8117 s
[2025-07-28 15:10:29] 2025-07-28 13:09:57,246 | INFO     | . stage-out = 0 s
[2025-07-28 15:10:29] 2025-07-28 13:09:57,247 | INFO     | . log creation = 0 s
[2025-07-28 15:10:29] 2025-07-28 13:09:57,247 | INFO     | ..............................
[2025-07-28 15:10:29] 2025-07-28 13:09:57,278 | INFO     | 
[2025-07-28 15:10:29] 2025-07-28 13:09:57,278 | INFO     | job summary report
[2025-07-28 15:10:29] 2025-07-28 13:09:57,278 | INFO     | --------------------------------------------------
[2025-07-28 15:10:29] 2025-07-28 13:09:57,278 | INFO     | PanDA job id: 6747544634
[2025-07-28 15:10:29] 2025-07-28 13:09:57,278 | INFO     | task id: 45758484
[2025-07-28 15:10:29] 2025-07-28 13:09:57,278 | INFO     | errors: (none)
[2025-07-28 15:10:29] 2025-07-28 13:09:57,278 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 15:10:29] 2025-07-28 13:09:57,278 | INFO     | pilot state: finished 
[2025-07-28 15:10:29] 2025-07-28 13:09:57,278 | INFO     | transexitcode: 0
[2025-07-28 15:10:29] 2025-07-28 13:09:57,278 | INFO     | exeerrorcode: 0
[2025-07-28 15:10:29] 2025-07-28 13:09:57,278 | INFO     | exeerrordiag: 
[2025-07-28 15:10:29] 2025-07-28 13:09:57,278 | INFO     | exitcode: 0
[2025-07-28 15:10:29] 2025-07-28 13:09:57,278 | INFO     | exitmsg: OK
[2025-07-28 15:10:29] 2025-07-28 13:09:57,278 | INFO     | cpuconsumptiontime: 23553 s
[2025-07-28 15:10:29] 2025-07-28 13:09:57,278 | INFO     | nevents: 400
[2025-07-28 15:10:29] 2025-07-28 13:09:57,278 | INFO     | neventsw: 0
[2025-07-28 15:10:29] 2025-07-28 13:09:57,278 | INFO     | pid: 3155931
[2025-07-28 15:10:29] 2025-07-28 13:09:57,278 | INFO     | pgrp: 3155931
[2025-07-28 15:10:29] 2025-07-28 13:09:57,278 | INFO     | corecount: 3
[2025-07-28 15:10:29] 2025-07-28 13:09:57,278 | INFO     | event service: False
[2025-07-28 15:10:29] 2025-07-28 13:09:57,278 | INFO     | sizes: {0: 2397474, 2: 2397736, 10: 2397764, 8124: 2425716, 8125: 2434776, 8130: 2434914}
[2025-07-28 15:10:29] 2025-07-28 13:09:57,278 | INFO     | --------------------------------------------------
[2025-07-28 15:10:29] 2025-07-28 13:09:57,278 | INFO     | 
[2025-07-28 15:10:29] 2025-07-28 13:09:57,278 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-07-28 15:10:29] 2025-07-28 13:09:57,291 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 15:10:29] 2025-07-28 13:09:57,291 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 15:10:29] 2025-07-28 13:09:57,292 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 15:10:29] 2025-07-28 13:09:57,292 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 15:10:29] 2025-07-28 13:09:57,292 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 15:10:29] 2025-07-28 13:09:57,292 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 15:10:29] 2025-07-28 13:09:57,292 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 15:10:29] 2025-07-28 13:09:57,292 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 15:10:29] 2025-07-28 13:09:57,292 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 15:10:29] 2025-07-28 13:09:57,292 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 15:10:29] 2025-07-28 13:09:57,292 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 15:10:29] 2025-07-28 13:09:57,292 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 15:10:29] 2025-07-28 13:09:57,292 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 15:10:29] 2025-07-28 13:09:57,292 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 15:10:29] 2025-07-28 13:09:57,292 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 15:10:29] 2025-07-28 13:09:57,292 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 15:10:29] 2025-07-28 13:09:57,292 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 15:10:29] 2025-07-28 13:09:57,292 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 15:10:29] 2025-07-28 13:09:57,292 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 15:10:29] 2025-07-28 13:09:57,292 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 15:10:29] 2025-07-28 13:09:57,292 | INFO     | job 6747544634 has completed (purged errors)
[2025-07-28 15:10:29] 2025-07-28 13:09:57,292 | INFO     | overall cleanup function is called
[2025-07-28 15:10:29] 2025-07-28 13:09:58,299 | INFO     | --- collectZombieJob: --- 10, [3155931]
[2025-07-28 15:10:29] 2025-07-28 13:09:58,299 | INFO     | zombie collector waiting for pid 3155931
[2025-07-28 15:10:29] 2025-07-28 13:09:58,299 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 15:10:29] 2025-07-28 13:09:58,299 | INFO     | collected zombie processes
[2025-07-28 15:10:29] 2025-07-28 13:09:58,299 | INFO     | will attempt to kill all subprocesses of pid=3155931
[2025-07-28 15:10:29] 2025-07-28 13:09:58,345 | INFO     | process IDs to be killed: [3155931] (in reverse order)
[2025-07-28 15:10:29] 2025-07-28 13:09:58,370 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 15:10:29] 2025-07-28 13:09:58,371 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 15:10:29] 2025-07-28 13:09:58,372 | INFO     | did not find any defunct processes belonging to 3155931
[2025-07-28 15:10:29] 2025-07-28 13:09:58,373 | INFO     | did not find any defunct processes belonging to 3155931
[2025-07-28 15:10:29] 2025-07-28 13:09:58,373 | INFO     | ready for new job
[2025-07-28 15:10:29] 2025-07-28 13:09:58,373 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 15:10:29] 2025-07-28 13:09:58,374 | INFO     | ***************************************
[2025-07-28 15:10:29] 2025-07-28 13:09:58,374 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 15:10:29] 2025-07-28 13:09:58,374 | INFO     | ***************************************
[2025-07-28 15:10:29] 2025-07-28 13:09:58,374 | INFO     | 
[2025-07-28 15:10:29] 2025-07-28 13:09:58,374 | INFO     | architecture information:
[2025-07-28 15:10:29] 2025-07-28 13:09:58,375 | INFO     | executing command: cat /etc/os-release
[2025-07-28 15:10:29] 2025-07-28 13:09:58,384 | INFO     | cat /etc/os-release:
[2025-07-28 15:10:29] NAME="CentOS Linux"
[2025-07-28 15:10:29] VERSION="7 (Core)"
[2025-07-28 15:10:29] ID="centos"
[2025-07-28 15:10:29] ID_LIKE="rhel fedora"
[2025-07-28 15:10:29] VERSION_ID="7"
[2025-07-28 15:10:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 15:10:29] ANSI_COLOR="0;31"
[2025-07-28 15:10:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 15:10:29] HOME_URL="https://www.centos.org/"
[2025-07-28 15:10:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 15:10:29] 
[2025-07-28 15:10:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 15:10:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 15:10:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 15:10:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 15:10:29] 
[2025-07-28 15:10:29] 2025-07-28 13:09:58,384 | INFO     | ***************************************
[2025-07-28 15:10:29] 2025-07-28 13:09:58,887 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-07-28 15:10:29] 2025-07-28 13:09:58,900 | INFO     | sufficient remaining disk space (366333657088 B)
[2025-07-28 15:10:29] 2025-07-28 13:09:58,900 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 15:10:29] 2025-07-28 13:09:58,900 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 15:10:29] 2025-07-28 13:09:58,900 | INFO     | update_server=False
[2025-07-28 15:10:29] 2025-07-28 13:09:58,900 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 15:10:29] 2025-07-28 13:09:58,901 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 15:10:29] 2025-07-28 13:09:58,901 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 15:10:29] 2025-07-28 13:09:58,901 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 15:10:29] 2025-07-28 13:09:59,213 | INFO     | all payload control threads have been joined
[2025-07-28 15:10:29] 2025-07-28 13:09:59,287 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-28 15:10:29] 2025-07-28 13:09:59,287 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-28 15:10:29] 2025-07-28 13:09:59,288 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 15:10:29] 2025-07-28 13:09:59,288 | INFO     | will abort loop
[2025-07-28 15:10:29] 2025-07-28 13:09:59,457 | INFO     | all data control threads have been joined
[2025-07-28 15:10:29] 2025-07-28 13:09:59,906 | INFO     | [job] retrieve thread has finished
[2025-07-28 15:10:29] 2025-07-28 13:09:59,906 | INFO     | [job] queue monitor thread has finished
[2025-07-28 15:10:29] 2025-07-28 13:10:00,009 | INFO     | all job control threads have been joined
[2025-07-28 15:10:29] 2025-07-28 13:10:00,219 | INFO     | [payload] control thread has finished
[2025-07-28 15:10:29] 2025-07-28 13:10:00,246 | INFO     | [data] copytool_in thread has finished
[2025-07-28 15:10:29] 2025-07-28 13:10:00,293 | INFO     | [job] job monitor thread has finished
[2025-07-28 15:10:29] 2025-07-28 13:10:00,423 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 15:10:29] 2025-07-28 13:10:00,462 | INFO     | [data] control thread has finished
[2025-07-28 15:10:29] 2025-07-28 13:10:00,673 | INFO     | [job] validate thread has finished
[2025-07-28 15:10:29] 2025-07-28 13:10:00,727 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 15:10:29] 2025-07-28 13:10:00,793 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 15:10:29] 2025-07-28 13:10:00,907 | INFO     | [data] copytool_out thread has finished
[2025-07-28 15:10:29] 2025-07-28 13:10:00,954 | INFO     | [payload] validate_post thread has finished
[2025-07-28 15:10:29] 2025-07-28 13:10:01,012 | INFO     | [job] control thread has finished
[2025-07-28 15:10:29] 2025-07-28 13:10:01,503 | INFO     | [payload] failed_post thread has finished
[2025-07-28 15:10:29] 2025-07-28 13:10:02,908 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 15:10:29] 2025-07-28 13:10:09,388 | INFO     | job.realtimelogging is not enabled
[2025-07-28 15:10:29] 2025-07-28 13:10:10,394 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 15:10:29] 2025-07-28 13:10:11,259 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140369121761088)>', '<ExcThread(monitor, started 140368641251072)>']
[2025-07-28 15:10:29] 2025-07-28 13:10:16,263 | INFO     | all workflow threads have been joined
[2025-07-28 15:10:29] 2025-07-28 13:10:16,263 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 15:10:29] 2025-07-28 13:10:16,263 | INFO     | traces error code: 0
[2025-07-28 15:10:29] 2025-07-28 13:10:16,263 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 15:10:29] 2025-07-28 13:10:29,224 | INFO     | PID=3149431 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 15:10:29] 2025-07-28 13:10:29,224 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 15:10:29] 2025-07-28 13:10:29,224 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 15:10:29] 2025-07-28 13:10:29,224 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 15:10:29] 2025-07-28 13:10:29,224 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 15:10:29] 2025-07-28 13:10:29,224 | INFO     | [monitor] control thread has ended
[2025-07-28 15:10:29] 2025-07-28 13:10:29,270 [wrapper] ==== pilot stdout END ====
[2025-07-28 15:10:29] 2025-07-28 13:10:29,272 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 15:10:29] 2025-07-28 13:10:29,275 [wrapper] pilotpid: 3149431
[2025-07-28 15:10:29] 2025-07-28 13:10:29,277 [wrapper] Pilot exit status: 0
[2025-07-28 15:10:29] 2025-07-28 13:10:29,285 [wrapper] pandaids: 6747544634 6747544634
[2025-07-28 15:10:29] 2025-07-28 13:10:29,302 [wrapper] cleanup supervisor_pilot 3173751 3149432
[2025-07-28 15:10:29] 2025-07-28 13:10:29,305 [wrapper] Test setup, not cleaning
[2025-07-28 15:10:29] 2025-07-28 13:10:29,307 [wrapper] apfmon messages muted
[2025-07-28 15:10:29] 2025-07-28 13:10:29,309 [wrapper] ==== wrapper stdout END ====
[2025-07-28 15:10:29] 2025-07-28 13:10:29,312 [wrapper] ==== wrapper stderr END ====
[2025-07-28 15:10:29]  *** Error codes and diagnostics ***
[2025-07-28 15:10:29]     "exeErrorCode": 0,
[2025-07-28 15:10:29]     "exeErrorDiag": "",
[2025-07-28 15:10:29]     "pilotErrorCode": 0,
[2025-07-28 15:10:29]     "pilotErrorDiag": "",
[2025-07-28 15:10:29]  *** Listing of results directory ***
[2025-07-28 15:10:29] total 595148
[2025-07-28 15:10:29] drwx------ 4 boinc boinc      4096 Jun 17 12:04 pilot3
[2025-07-28 15:10:29] -rw-r--r-- 1 boinc boinc    530466 Jul 27 18:02 pilot3.tar.gz
[2025-07-28 15:10:29] -rwx------ 1 boinc boinc     36292 Jul 27 18:46 runpilot2-wrapper.sh
[2025-07-28 15:10:29] -rw-r--r-- 1 boinc boinc      5112 Jul 27 18:46 queuedata.json
[2025-07-28 15:10:29] -rw-r--r-- 1 boinc boinc       100 Jul 28 12:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 15:10:29] -rwxr-xr-x 1 boinc boinc      7986 Jul 28 12:05 run_atlas
[2025-07-28 15:10:29] -rw-r--r-- 1 boinc boinc       105 Jul 28 12:05 job.xml
[2025-07-28 15:10:29] -rw-r--r-- 3 boinc boinc 219068125 Jul 28 12:05 EVNT.45758482._000005.pool.root.1
[2025-07-28 15:10:29] -rw-r--r-- 3 boinc boinc 219068125 Jul 28 12:05 ATLAS.root_0
[2025-07-28 15:10:29] -rw-r--r-- 2 boinc boinc    542877 Jul 28 12:05 input.tar.gz
[2025-07-28 15:10:29] -rw-r--r-- 2 boinc boinc     15095 Jul 28 12:05 start_atlas.sh
[2025-07-28 15:10:29] drwxrwx--x 2 boinc boinc      4096 Jul 28 12:05 shared
[2025-07-28 15:10:29] -rw-r--r-- 1 boinc boinc         0 Jul 28 12:05 boinc_setup_complete
[2025-07-28 15:10:29] -rw-r--r-- 1 boinc boinc         0 Jul 28 12:05 boinc_lockfile
[2025-07-28 15:10:29] -rw-r--r-- 1 boinc boinc      6456 Jul 28 12:54 init_data.xml
[2025-07-28 15:10:29] -rw-r--r-- 1 boinc boinc      2560 Jul 28 12:54 pandaJob.out
[2025-07-28 15:10:29] -rw------- 1 boinc boinc    978460 Jul 28 12:54 agis_schedconf.cvmfs.json
[2025-07-28 15:10:29] -rw------- 1 boinc boinc 165368948 Jul 28 15:09 HITS.45758484._000110.pool.root.1
[2025-07-28 15:10:29] -rw-r--r-- 1 boinc boinc       531 Jul 28 15:09 boinc_task_state.xml
[2025-07-28 15:10:29] -rw------- 1 boinc boinc      1016 Jul 28 15:09 memory_monitor_summary.json
[2025-07-28 15:10:29] -rw------- 1 boinc boinc   1593052 Jul 28 15:09 agis_ddmendpoints.agis.ALL.json
[2025-07-28 15:10:29] -rw------- 1 boinc boinc    257503 Jul 28 15:09 log.45758484._000110.job.log.tgz.1
[2025-07-28 15:10:29] -rw------- 1 boinc boinc        96 Jul 28 15:09 pilot_heartbeat.json
[2025-07-28 15:10:29] -rw------- 1 boinc boinc      7744 Jul 28 15:09 heartbeat.json
[2025-07-28 15:10:29] -rw-r--r-- 1 boinc boinc      8192 Jul 28 15:10 boinc_mmap_file
[2025-07-28 15:10:29] -rw-r--r-- 1 boinc boinc        28 Jul 28 15:10 wrapper_checkpoint.txt
[2025-07-28 15:10:29] -rw------- 1 boinc boinc       747 Jul 28 15:10 pilotlog.txt
[2025-07-28 15:10:29] -rw------- 1 boinc boinc    765454 Jul 28 15:10 log.45758484._000110.job.log.1
[2025-07-28 15:10:29] -rw------- 1 boinc boinc       357 Jul 28 15:10 output.list
[2025-07-28 15:10:29] -rw-r--r-- 1 boinc boinc       620 Jul 28 15:10 runtime_log
[2025-07-28 15:10:29] -rw------- 1 boinc boinc   1044480 Jul 28 15:10 result.tar.gz
[2025-07-28 15:10:29] -rw-r--r-- 1 boinc boinc      8834 Jul 28 15:10 runtime_log.err
[2025-07-28 15:10:29] -rw------- 1 boinc boinc       787 Jul 28 15:10 ZUQODmWhJ07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlrVLDmEjsD7m.diag
[2025-07-28 15:10:29] -rw-r--r-- 1 boinc boinc     23008 Jul 28 15:10 stderr.txt
[2025-07-28 15:10:29] HITS file was successfully produced:
[2025-07-28 15:10:29] -rw------- 1 boinc boinc 165368948 Jul 28 15:09 shared/HITS.pool.root.1
[2025-07-28 15:10:29]  *** Contents of shared directory: ***
[2025-07-28 15:10:29] total 377008
[2025-07-28 15:10:29] -rw-r--r-- 3 boinc boinc 219068125 Jul 28 12:05 ATLAS.root_0
[2025-07-28 15:10:29] -rw-r--r-- 2 boinc boinc    542877 Jul 28 12:05 input.tar.gz
[2025-07-28 15:10:29] -rw-r--r-- 2 boinc boinc     15095 Jul 28 12:05 start_atlas.sh
[2025-07-28 15:10:29] -rw------- 1 boinc boinc 165368948 Jul 28 15:09 HITS.pool.root.1
[2025-07-28 15:10:29] -rw------- 1 boinc boinc   1044480 Jul 28 15:10 result.tar.gz
15:10:30 (3145342): run_atlas exited; CPU time 23586.053765
15:10:30 (3145342): called boinc_finish(0)

</stderr_txt>
]]>

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