Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:39:56 (1848213): wrapper (7.7.26015): starting
17:39:56 (1848213): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 17:39:56] Arguments: --nthreads 8
[2025-07-27 17:39:56] Threads: 8
[2025-07-27 17:39:56] Checking for CVMFS
[2025-07-27 17:39:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 17:39:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 17:39:56] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 17:39:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 17:39:56] 2.13.1.0 704839 14674 159984 148825 1 196 32354562 40960000 10408 16776704 0 44156535 99.891 17314029 42285 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 17:39:56] CVMFS is ok
[2025-07-27 17:39:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 17:39:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 17:39:56] Further information can be found at the LHC@home message board.
[2025-07-27 17:39:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 17:39:56] Checking for apptainer binary...
[2025-07-27 17:39:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 17:39:56] Running /usr/bin/apptainer --version
[2025-07-27 17:39:56] apptainer version 1.4.1-1.el9
[2025-07-27 17:39:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 17:39:57] c-212-4.aglt2.org
[2025-07-27 17:39:57] apptainer works
[2025-07-27 17:39:57] Set ATHENA_PROC_NUMBER=8
[2025-07-27 17:39:57] Set ATHENA_CORE_NUMBER=8
[2025-07-27 17:39:57] Starting ATLAS job with PandaID=6747626270
[2025-07-27 17:39:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 19:08:09]  *** The last 200 lines of the pilot log: ***
[2025-07-27 19:08:09]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 19:08:09]  replicas=None
[2025-07-27 19:08:09]  scope=mc23_13p6TeV
[2025-07-27 19:08:09]  status=None
[2025-07-27 19:08:09]  status_code=0
[2025-07-27 19:08:09]  storage_token=
[2025-07-27 19:08:09]  surl=/tmp/boinchome/slots/8/PanDA_Pilot-6747626270/log.45743349._054372.job.log.tgz.1
[2025-07-27 19:08:09]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c4/04/log.45743349._054372.job.log.tgz.1
[2025-07-27 19:08:09]  workdir=None
[2025-07-27 19:08:09] ]
[2025-07-27 19:08:09] 2025-07-27 23:07:29,679 | INFO     | transferring file log.45743349._054372.job.log.tgz.1 from /tmp/boinchome/slots/8/PanDA_Pilot-6747626270/log.45743349._054372.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 19:08:09] 2025-07-27 23:07:29,679 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/8/PanDA_Pilot-6747626270/log.45743349._054372.job.log.tgz.1 /tmp/boinchome/slots/8/log.45743349._054372.job
[2025-07-27 19:08:09] 2025-07-27 23:07:29,696 | INFO     | adding to output.list: log.45743349._054372.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c4/04/log.45743349._054372.job.log.tg
[2025-07-27 19:08:09] 2025-07-27 23:07:29,696 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 19:08:09] 2025-07-27 23:07:29,696 | INFO     | summary of transferred files:
[2025-07-27 19:08:09] 2025-07-27 23:07:29,697 | INFO     |  -- lfn=log.45743349._054372.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 19:08:09] 2025-07-27 23:07:29,697 | INFO     | stage-out finished correctly
[2025-07-27 19:08:09] 2025-07-27 23:07:30,338 | WARNING  | process 1859811 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 19:08:09] 2025-07-27 23:07:30,339 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6747626270/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 19:08:09] 2025-07-27 23:07:30,681 | INFO     | number of running child processes to parent process 1859811: 1
[2025-07-27 19:08:09] 2025-07-27 23:07:30,681 | INFO     | maximum number of monitored processes: 6
[2025-07-27 19:08:09] 2025-07-27 23:07:30,771 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 19:08:09] 2025-07-27 23:07:32,836 | INFO     | job 6747626270 has state=finished
[2025-07-27 19:08:09] 2025-07-27 23:07:32,836 | INFO     | preparing for final server update for job 6747626270 in state='finished'
[2025-07-27 19:08:09] 2025-07-27 23:07:32,836 | INFO     | this job has now completed (state=finished)
[2025-07-27 19:08:09] 2025-07-27 23:07:32,836 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 19:08:09] 2025-07-27 23:07:32,836 | INFO     | log transfer has been attempted: DONE
[2025-07-27 19:08:09] 2025-07-27 23:07:32,836 | INFO     | job 6747626270 has finished - writing final server update
[2025-07-27 19:08:09] 2025-07-27 23:07:32,836 | INFO     | total number of processed events: 400 (read)
[2025-07-27 19:08:09] 2025-07-27 23:07:32,837 | INFO     | executing command: lscpu
[2025-07-27 19:08:09] 2025-07-27 23:07:32,897 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 19:08:09] 2025-07-27 23:07:33,184 | INFO     | monitor loop #382: job 0:6747626270 is in state 'finished'
[2025-07-27 19:08:09] 2025-07-27 23:07:33,184 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 19:08:09] 2025-07-27 23:07:35,687 | INFO     | monitor loop #383: job 0:6747626270 is in state 'finished'
[2025-07-27 19:08:09] 2025-07-27 23:07:35,687 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 19:08:09] 2025-07-27 23:07:35,830 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 19:08:09] 2025-07-27 23:07:35,834 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3333.623802083333
[2025-07-27 19:08:09] 2025-07-27 23:07:35,844 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6747626270/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 19:08:09] 2025-07-27 23:07:35,845 | INFO     | extracted standard info from prmon json
[2025-07-27 19:08:09] 2025-07-27 23:07:35,845 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 19:08:09] 2025-07-27 23:07:35,845 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 19:08:09] 2025-07-27 23:07:35,845 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 19:08:09] 2025-07-27 23:07:35,845 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 19:08:09] 2025-07-27 23:07:35,847 | INFO     | fitting pss+swap vs Time
[2025-07-27 19:08:09] 2025-07-27 23:07:35,847 | INFO     | sum of square deviations: 152858680.0
[2025-07-27 19:08:09] 2025-07-27 23:07:35,847 | INFO     | sum of deviations: 2031592617.0
[2025-07-27 19:08:09] 2025-07-27 23:07:35,847 | INFO     | mean x: 1753655120.0
[2025-07-27 19:08:09] 2025-07-27 23:07:35,847 | INFO     | mean y: 2508982.341772152
[2025-07-27 19:08:09] 2025-07-27 23:07:35,847 | INFO     | -- intersect: -23304723518.660126
[2025-07-27 19:08:09] 2025-07-27 23:07:35,847 | INFO     | intersect: -23304723518.660126
[2025-07-27 19:08:09] 2025-07-27 23:07:35,847 | INFO     | chi2: 0.05568923320742176
[2025-07-27 19:08:09] 2025-07-27 23:07:35,847 | INFO     | -- intersect: -23304723518.660126
[2025-07-27 19:08:09] 2025-07-27 23:07:35,847 | INFO     | current memory leak: 13.29 B/s (using 79 data points, chi2=0.06)
[2025-07-27 19:08:09] 2025-07-27 23:07:35,848 | INFO     | could have reported an average CPU frequency of 3284 MHz (6 samples)
[2025-07-27 19:08:09] 2025-07-27 23:07:35,848 | INFO     | ..............................
[2025-07-27 19:08:09] 2025-07-27 23:07:35,848 | INFO     | . Timing measurements:
[2025-07-27 19:08:09] 2025-07-27 23:07:35,848 | INFO     | . get job = 0 s
[2025-07-27 19:08:09] 2025-07-27 23:07:35,848 | INFO     | . initial setup = 2 s
[2025-07-27 19:08:09] 2025-07-27 23:07:35,848 | INFO     | . payload setup = 7 s
[2025-07-27 19:08:09] 2025-07-27 23:07:35,848 | INFO     | . stage-in = 0 s
[2025-07-27 19:08:09] 2025-07-27 23:07:35,848 | INFO     | . payload execution = 5214 s
[2025-07-27 19:08:09] 2025-07-27 23:07:35,848 | INFO     | . stage-out = 0 s
[2025-07-27 19:08:09] 2025-07-27 23:07:35,848 | INFO     | . log creation = 0 s
[2025-07-27 19:08:09] 2025-07-27 23:07:35,848 | INFO     | ..............................
[2025-07-27 19:08:09] 2025-07-27 23:07:36,100 | INFO     | 
[2025-07-27 19:08:09] 2025-07-27 23:07:36,100 | INFO     | job summary report
[2025-07-27 19:08:09] 2025-07-27 23:07:36,100 | INFO     | --------------------------------------------------
[2025-07-27 19:08:09] 2025-07-27 23:07:36,100 | INFO     | PanDA job id: 6747626270
[2025-07-27 19:08:09] 2025-07-27 23:07:36,100 | INFO     | task id: 45743349
[2025-07-27 19:08:09] 2025-07-27 23:07:36,101 | INFO     | errors: (none)
[2025-07-27 19:08:09] 2025-07-27 23:07:36,101 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 19:08:09] 2025-07-27 23:07:36,101 | INFO     | pilot state: finished 
[2025-07-27 19:08:09] 2025-07-27 23:07:36,101 | INFO     | transexitcode: 0
[2025-07-27 19:08:09] 2025-07-27 23:07:36,101 | INFO     | exeerrorcode: 0
[2025-07-27 19:08:09] 2025-07-27 23:07:36,101 | INFO     | exeerrordiag: 
[2025-07-27 19:08:09] 2025-07-27 23:07:36,101 | INFO     | exitcode: 0
[2025-07-27 19:08:09] 2025-07-27 23:07:36,101 | INFO     | exitmsg: OK
[2025-07-27 19:08:09] 2025-07-27 23:07:36,101 | INFO     | cpuconsumptiontime: 36283 s
[2025-07-27 19:08:09] 2025-07-27 23:07:36,101 | INFO     | nevents: 400
[2025-07-27 19:08:09] 2025-07-27 23:07:36,101 | INFO     | neventsw: 0
[2025-07-27 19:08:09] 2025-07-27 23:07:36,101 | INFO     | pid: 1859811
[2025-07-27 19:08:09] 2025-07-27 23:07:36,101 | INFO     | pgrp: 1859811
[2025-07-27 19:08:09] 2025-07-27 23:07:36,101 | INFO     | corecount: 8
[2025-07-27 19:08:09] 2025-07-27 23:07:36,101 | INFO     | event service: False
[2025-07-27 19:08:09] 2025-07-27 23:07:36,101 | INFO     | sizes: {0: 2397475, 1: 2397475, 5: 2397765, 11: 2397821, 5225: 2424217, 5226: 2433215, 5227: 2433399, 5232: 2433593}
[2025-07-27 19:08:09] 2025-07-27 23:07:36,101 | INFO     | --------------------------------------------------
[2025-07-27 19:08:09] 2025-07-27 23:07:36,101 | INFO     | 
[2025-07-27 19:08:09] 2025-07-27 23:07:36,101 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2025-07-27 19:08:09] 2025-07-27 23:07:36,117 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 19:08:09] 2025-07-27 23:07:36,118 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 19:08:09] 2025-07-27 23:07:36,118 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 19:08:09] 2025-07-27 23:07:36,118 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 19:08:09] 2025-07-27 23:07:36,118 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 19:08:09] 2025-07-27 23:07:36,118 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 19:08:09] 2025-07-27 23:07:36,118 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 19:08:09] 2025-07-27 23:07:36,118 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 19:08:09] 2025-07-27 23:07:36,118 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 19:08:09] 2025-07-27 23:07:36,118 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 19:08:09] 2025-07-27 23:07:36,118 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 19:08:09] 2025-07-27 23:07:36,118 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 19:08:09] 2025-07-27 23:07:36,118 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 19:08:09] 2025-07-27 23:07:36,118 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 19:08:09] 2025-07-27 23:07:36,118 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 19:08:09] 2025-07-27 23:07:36,118 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 19:08:09] 2025-07-27 23:07:36,118 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 19:08:09] 2025-07-27 23:07:36,118 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 19:08:09] 2025-07-27 23:07:36,118 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 19:08:09] 2025-07-27 23:07:36,118 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 19:08:09] 2025-07-27 23:07:36,119 | INFO     | job 6747626270 has completed (purged errors)
[2025-07-27 19:08:09] 2025-07-27 23:07:36,119 | INFO     | overall cleanup function is called
[2025-07-27 19:08:09] 2025-07-27 23:07:37,126 | INFO     | --- collectZombieJob: --- 10, [1859811]
[2025-07-27 19:08:09] 2025-07-27 23:07:37,126 | INFO     | zombie collector waiting for pid 1859811
[2025-07-27 19:08:09] 2025-07-27 23:07:37,126 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 19:08:09] 2025-07-27 23:07:37,126 | INFO     | collected zombie processes
[2025-07-27 19:08:09] 2025-07-27 23:07:37,126 | INFO     | will attempt to kill all subprocesses of pid=1859811
[2025-07-27 19:08:09] 2025-07-27 23:07:37,376 | INFO     | process IDs to be killed: [1859811] (in reverse order)
[2025-07-27 19:08:09] 2025-07-27 23:07:37,472 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 19:08:09] 2025-07-27 23:07:37,472 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 19:08:09] 2025-07-27 23:07:37,480 | INFO     | did not find any defunct processes belonging to 1859811
[2025-07-27 19:08:09] 2025-07-27 23:07:37,487 | INFO     | did not find any defunct processes belonging to 1859811
[2025-07-27 19:08:09] 2025-07-27 23:07:37,487 | INFO     | ready for new job
[2025-07-27 19:08:09] 2025-07-27 23:07:37,487 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 19:08:09] 2025-07-27 23:07:37,488 | INFO     | ***************************************
[2025-07-27 19:08:09] 2025-07-27 23:07:37,488 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 19:08:09] 2025-07-27 23:07:37,488 | INFO     | ***************************************
[2025-07-27 19:08:09] 2025-07-27 23:07:37,488 | INFO     | 
[2025-07-27 19:08:09] 2025-07-27 23:07:37,492 | INFO     | architecture information:
[2025-07-27 19:08:09] 2025-07-27 23:07:37,492 | INFO     | executing command: cat /etc/os-release
[2025-07-27 19:08:09] 2025-07-27 23:07:37,505 | INFO     | cat /etc/os-release:
[2025-07-27 19:08:09] NAME="CentOS Linux"
[2025-07-27 19:08:09] VERSION="7 (Core)"
[2025-07-27 19:08:09] ID="centos"
[2025-07-27 19:08:09] ID_LIKE="rhel fedora"
[2025-07-27 19:08:09] VERSION_ID="7"
[2025-07-27 19:08:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 19:08:09] ANSI_COLOR="0;31"
[2025-07-27 19:08:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 19:08:09] HOME_URL="https://www.centos.org/"
[2025-07-27 19:08:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 19:08:09] 
[2025-07-27 19:08:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 19:08:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 19:08:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 19:08:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 19:08:09] 
[2025-07-27 19:08:09] 2025-07-27 23:07:37,505 | INFO     | ***************************************
[2025-07-27 19:08:09] 2025-07-27 23:07:38,008 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-07-27 19:08:09] 2025-07-27 23:07:38,020 | INFO     | sufficient remaining disk space (123820048384 B)
[2025-07-27 19:08:09] 2025-07-27 23:07:38,020 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 19:08:09] 2025-07-27 23:07:38,021 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 19:08:09] 2025-07-27 23:07:38,021 | INFO     | update_server=False
[2025-07-27 19:08:09] 2025-07-27 23:07:38,021 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 19:08:09] 2025-07-27 23:07:38,021 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 19:08:09] 2025-07-27 23:07:38,146 | INFO     | all payload control threads have been joined
[2025-07-27 19:08:09] 2025-07-27 23:07:38,191 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 19:08:09] 2025-07-27 23:07:38,191 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 19:08:09] 2025-07-27 23:07:38,191 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:08:09] 2025-07-27 23:07:38,191 | INFO     | will abort loop
[2025-07-27 19:08:09] 2025-07-27 23:07:38,201 | INFO     | all job control threads have been joined
[2025-07-27 19:08:09] 2025-07-27 23:07:38,714 | INFO     | all data control threads have been joined
[2025-07-27 19:08:09] 2025-07-27 23:07:39,026 | INFO     | [job] retrieve thread has finished
[2025-07-27 19:08:09] 2025-07-27 23:07:39,106 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 19:08:09] 2025-07-27 23:07:39,150 | INFO     | [payload] control thread has finished
[2025-07-27 19:08:09] 2025-07-27 23:07:39,178 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 19:08:09] 2025-07-27 23:07:39,196 | INFO     | [job] job monitor thread has finished
[2025-07-27 19:08:09] 2025-07-27 23:07:39,206 | INFO     | [job] control thread has finished
[2025-07-27 19:08:09] 2025-07-27 23:07:39,362 | INFO     | [payload] failed_post thread has finished
[2025-07-27 19:08:09] 2025-07-27 23:07:39,400 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 19:08:09] 2025-07-27 23:07:39,518 | INFO     | [job] validate thread has finished
[2025-07-27 19:08:09] 2025-07-27 23:07:39,716 | INFO     | [data] control thread has finished
[2025-07-27 19:08:09] 2025-07-27 23:07:39,803 | INFO     | [payload] validate_post thread has finished
[2025-07-27 19:08:09] 2025-07-27 23:07:40,024 | INFO     | [data] copytool_out thread has finished
[2025-07-27 19:08:09] 2025-07-27 23:07:40,126 | INFO     | [data] copytool_in thread has finished
[2025-07-27 19:08:09] 2025-07-27 23:07:40,377 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 19:08:09] 2025-07-27 23:07:40,914 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:08:09] 2025-07-27 23:07:41,328 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 19:08:09] 2025-07-27 23:07:41,920 | INFO     | [job] queue monitor thread has finished
[2025-07-27 19:08:09] 2025-07-27 23:07:45,334 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 19:08:09] 2025-07-27 23:07:46,479 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140558549731136)>', '<ExcThread(monitor, started 140557695313664)>']
[2025-07-27 19:08:09] 2025-07-27 23:07:51,504 | INFO     | all workflow threads have been joined
[2025-07-27 19:08:09] 2025-07-27 23:07:51,505 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 19:08:09] 2025-07-27 23:07:51,505 | INFO     | traces error code: 0
[2025-07-27 19:08:09] 2025-07-27 23:07:51,505 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 19:08:09] 2025-07-27 23:08:09,120 | INFO     | PID=1852323 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 19:08:09] 2025-07-27 23:08:09,121 | INFO     | .. there are 14 such processes running
[2025-07-27 19:08:09] 2025-07-27 23:08:09,121 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 19:08:09] 2025-07-27 23:08:09,121 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 19:08:09] 2025-07-27 23:08:09,121 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 19:08:09] 2025-07-27 23:08:09,121 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 19:08:09] 2025-07-27 23:08:09,121 | INFO     | [monitor] control thread has ended
[2025-07-27 19:08:09] 2025-07-27 23:08:09,191 [wrapper] ==== pilot stdout END ====
[2025-07-27 19:08:09] 2025-07-27 23:08:09,193 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 19:08:09] 2025-07-27 23:08:09,194 [wrapper] pilotpid: 1852323
[2025-07-27 19:08:09] 2025-07-27 23:08:09,196 [wrapper] Pilot exit status: 0
[2025-07-27 19:08:09] 2025-07-27 23:08:09,203 [wrapper] pandaids: 6747626270
[2025-07-27 19:08:09] 2025-07-27 23:08:09,253 [wrapper] cleanup supervisor_pilot 2168149 1852324
[2025-07-27 19:08:09] 2025-07-27 23:08:09,255 [wrapper] Test setup, not cleaning
[2025-07-27 19:08:09] 2025-07-27 23:08:09,257 [wrapper] apfmon messages muted
[2025-07-27 19:08:09] 2025-07-27 23:08:09,259 [wrapper] ==== wrapper stdout END ====
[2025-07-27 19:08:09] 2025-07-27 23:08:09,261 [wrapper] ==== wrapper stderr END ====
[2025-07-27 19:08:09]  *** Error codes and diagnostics ***
[2025-07-27 19:08:09]     "exeErrorCode": 0,
[2025-07-27 19:08:09]     "exeErrorDiag": "",
[2025-07-27 19:08:09]     "pilotErrorCode": 0,
[2025-07-27 19:08:09]     "pilotErrorDiag": "",
[2025-07-27 19:08:09]  *** Listing of results directory ***
[2025-07-27 19:08:09] total 440672
[2025-07-27 19:08:09] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 15:12 pilot3.tar.gz
[2025-07-27 19:08:09] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 15:15 queuedata.json
[2025-07-27 19:08:09] -rwx------. 1 boincer umatlas     36292 Jul 27 15:17 runpilot2-wrapper.sh
[2025-07-27 19:08:09] -rw-r--r--. 1 boincer umatlas       100 Jul 27 17:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 19:08:09] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 17:39 run_atlas
[2025-07-27 19:08:09] -rw-r--r--. 1 boincer umatlas       105 Jul 27 17:39 job.xml
[2025-07-27 19:08:09] -rw-r--r--. 2 boincer umatlas 231738849 Jul 27 17:39 EVNT.45743347._002946.pool.root.1
[2025-07-27 19:08:09] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 17:39 start_atlas.sh
[2025-07-27 19:08:09] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 17:39 shared
[2025-07-27 19:08:09] -rw-r--r--. 2 boincer umatlas    542898 Jul 27 17:39 input.tar.gz
[2025-07-27 19:08:09] -rw-r--r--. 1 boincer umatlas         0 Jul 27 17:39 boinc_lockfile
[2025-07-27 19:08:09] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 17:39 pandaJob.out
[2025-07-27 19:08:09] -rw-------. 1 boincer umatlas    980117 Jul 27 17:40 agis_schedconf.cvmfs.json
[2025-07-27 19:08:09] -rw-------. 1 boincer umatlas   1593052 Jul 27 17:40 agis_ddmendpoints.agis.ALL.json
[2025-07-27 19:08:09] drwx------. 4 boincer umatlas      4096 Jul 27 17:40 pilot3
[2025-07-27 19:08:09] -rw-r--r--. 1 boincer umatlas      6945 Jul 27 19:02 init_data.xml
[2025-07-27 19:08:09] -rw-------. 1 boincer umatlas 214018002 Jul 27 19:07 HITS.45743349._054372.pool.root.1
[2025-07-27 19:08:09] -rw-r--r--. 1 boincer umatlas       529 Jul 27 19:07 boinc_task_state.xml
[2025-07-27 19:08:09] -rw-------. 1 boincer umatlas        95 Jul 27 19:07 pilot_heartbeat.json
[2025-07-27 19:08:09] -rw-------. 1 boincer umatlas      1027 Jul 27 19:07 memory_monitor_summary.json
[2025-07-27 19:08:09] -rw-------. 1 boincer umatlas    298419 Jul 27 19:07 log.45743349._054372.job.log.tgz.1
[2025-07-27 19:08:09] -rw-------. 1 boincer umatlas      7766 Jul 27 19:07 heartbeat.json
[2025-07-27 19:08:09] -rw-r--r--. 1 boincer umatlas        27 Jul 27 19:07 wrapper_checkpoint.txt
[2025-07-27 19:08:09] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 19:07 boinc_mmap_file
[2025-07-27 19:08:09] -rw-------. 1 boincer umatlas       823 Jul 27 19:08 pilotlog.txt
[2025-07-27 19:08:09] -rw-------. 1 boincer umatlas    507702 Jul 27 19:08 log.45743349._054372.job.log.1
[2025-07-27 19:08:09] -rw-------. 1 boincer umatlas       357 Jul 27 19:08 output.list
[2025-07-27 19:08:09] -rw-r--r--. 1 boincer umatlas       620 Jul 27 19:08 runtime_log
[2025-07-27 19:08:09] -rw-------. 1 boincer umatlas    829440 Jul 27 19:08 result.tar.gz
[2025-07-27 19:08:09] -rw-------. 1 boincer umatlas       650 Jul 27 19:08 xwkLDmz2L07n9Rq4apOajLDm4fhM0noT9bVof3QYDmI02KDmajHdVm.diag
[2025-07-27 19:08:09] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 19:08 runtime_log.err
[2025-07-27 19:08:09] -rw-r--r--. 1 boincer umatlas     21934 Jul 27 19:08 stderr.txt
[2025-07-27 19:08:09] HITS file was successfully produced:
[2025-07-27 19:08:09] -rw-------. 1 boincer umatlas 214018002 Jul 27 19:07 shared/HITS.pool.root.1
[2025-07-27 19:08:09]  *** Contents of shared directory: ***
[2025-07-27 19:08:09] total 436680
[2025-07-27 19:08:09] -rw-r--r--. 2 boincer umatlas 231738849 Jul 27 17:39 ATLAS.root_0
[2025-07-27 19:08:09] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 17:39 start_atlas.sh
[2025-07-27 19:08:09] -rw-r--r--. 2 boincer umatlas    542898 Jul 27 17:39 input.tar.gz
[2025-07-27 19:08:09] -rw-------. 1 boincer umatlas 214018002 Jul 27 19:07 HITS.pool.root.1
[2025-07-27 19:08:09] -rw-------. 1 boincer umatlas    829440 Jul 27 19:08 result.tar.gz
19:08:10 (1848213): run_atlas exited; CPU time 36431.518281
19:08:10 (1848213): called boinc_finish(0)

</stderr_txt>
]]>

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