Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:33:21 (3742273): wrapper (7.7.26015): starting
17:33:21 (3742273): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 17:33:21] Arguments: --nthreads 8
[2025-07-27 17:33:21] Threads: 8
[2025-07-27 17:33:21] Checking for CVMFS
[2025-07-27 17:33:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 17:33:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 17:33:21] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 17:33:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 17:33:22] 2.12.6.0 3144059 18908 344908 148825 1 292 30809734 40960001 10700 16776704 0 61468286 99.756 77448573 28314 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 17:33:22] CVMFS is ok
[2025-07-27 17:33:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 17:33:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 17:33:22] Further information can be found at the LHC@home message board.
[2025-07-27 17:33:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 17:33:22] Checking for apptainer binary...
[2025-07-27 17:33:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 17:33:22] Running /usr/bin/apptainer --version
[2025-07-27 17:33:22] apptainer version 1.4.1-1.el9
[2025-07-27 17:33:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 17:33:22] c7-11-15.aglt2.org
[2025-07-27 17:33:22] apptainer works
[2025-07-27 17:33:22] Set ATHENA_PROC_NUMBER=8
[2025-07-27 17:33:22] Set ATHENA_CORE_NUMBER=8
[2025-07-27 17:33:22] Starting ATLAS job with PandaID=6747525678
[2025-07-27 17:33:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 19:03:19]  *** The last 200 lines of the pilot log: ***
[2025-07-27 19:03:19]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 19:03:19]  replicas=None
[2025-07-27 19:03:19]  scope=mc23_13p6TeV
[2025-07-27 19:03:19]  status=None
[2025-07-27 19:03:19]  status_code=0
[2025-07-27 19:03:19]  storage_token=
[2025-07-27 19:03:19]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6747525678/log.45743349._052225.job.log.tgz.1
[2025-07-27 19:03:19]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/03/ae/log.45743349._052225.job.log.tgz.1
[2025-07-27 19:03:19]  workdir=None
[2025-07-27 19:03:19] ]
[2025-07-27 19:03:19] 2025-07-27 23:02:36,854 | INFO     | transferring file log.45743349._052225.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6747525678/log.45743349._052225.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 19:03:19] 2025-07-27 23:02:36,855 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6747525678/log.45743349._052225.job.log.tgz.1 /tmp/boinchome/slots/1/log.45743349._052225.job
[2025-07-27 19:03:19] 2025-07-27 23:02:36,885 | INFO     | adding to output.list: log.45743349._052225.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/03/ae/log.45743349._052225.job.log.tg
[2025-07-27 19:03:19] 2025-07-27 23:02:36,886 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 19:03:19] 2025-07-27 23:02:36,886 | INFO     | summary of transferred files:
[2025-07-27 19:03:19] 2025-07-27 23:02:36,886 | INFO     |  -- lfn=log.45743349._052225.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 19:03:19] 2025-07-27 23:02:36,886 | INFO     | stage-out finished correctly
[2025-07-27 19:03:19] 2025-07-27 23:02:37,395 | WARNING  | process 3757075 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 19:03:19] 2025-07-27 23:02:37,398 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6747525678/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 19:03:19] 2025-07-27 23:02:37,679 | INFO     | number of running child processes to parent process 3757075: 1
[2025-07-27 19:03:19] 2025-07-27 23:02:37,679 | INFO     | maximum number of monitored processes: 6
[2025-07-27 19:03:19] 2025-07-27 23:02:39,540 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 19:03:19] 2025-07-27 23:02:39,633 | INFO     | job 6747525678 has state=finished
[2025-07-27 19:03:19] 2025-07-27 23:02:39,634 | INFO     | preparing for final server update for job 6747525678 in state='finished'
[2025-07-27 19:03:19] 2025-07-27 23:02:39,634 | INFO     | this job has now completed (state=finished)
[2025-07-27 19:03:19] 2025-07-27 23:02:39,634 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 19:03:19] 2025-07-27 23:02:39,634 | INFO     | log transfer has been attempted: DONE
[2025-07-27 19:03:19] 2025-07-27 23:02:39,634 | INFO     | job 6747525678 has finished - writing final server update
[2025-07-27 19:03:19] 2025-07-27 23:02:39,635 | INFO     | total number of processed events: 400 (read)
[2025-07-27 19:03:19] 2025-07-27 23:02:39,635 | INFO     | executing command: lscpu
[2025-07-27 19:03:19] 2025-07-27 23:02:39,706 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 19:03:19] 2025-07-27 23:02:40,187 | INFO     | monitor loop #389: job 0:6747525678 is in state 'finished'
[2025-07-27 19:03:19] 2025-07-27 23:02:40,187 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 19:03:19] 2025-07-27 23:02:42,690 | INFO     | monitor loop #390: job 0:6747525678 is in state 'finished'
[2025-07-27 19:03:19] 2025-07-27 23:02:42,690 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 19:03:19] 2025-07-27 23:02:45,211 | INFO     | monitor loop #391: job 0:6747525678 is in state 'finished'
[2025-07-27 19:03:19] 2025-07-27 23:02:45,211 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 19:03:19] 2025-07-27 23:02:46,527 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 19:03:19] 2025-07-27 23:02:46,546 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3249.921109375001
[2025-07-27 19:03:19] 2025-07-27 23:02:46,556 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6747525678/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 19:03:19] 2025-07-27 23:02:46,557 | INFO     | extracted standard info from prmon json
[2025-07-27 19:03:19] 2025-07-27 23:02:46,557 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 19:03:19] 2025-07-27 23:02:46,557 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 19:03:19] 2025-07-27 23:02:46,558 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 19:03:19] 2025-07-27 23:02:46,558 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 19:03:19] 2025-07-27 23:02:46,559 | INFO     | fitting pss+swap vs Time
[2025-07-27 19:03:19] 2025-07-27 23:02:46,560 | INFO     | sum of square deviations: 158737860.0
[2025-07-27 19:03:19] 2025-07-27 23:02:46,560 | INFO     | sum of deviations: -13302519794.999998
[2025-07-27 19:03:19] 2025-07-27 23:02:46,560 | INFO     | mean x: 1753654771.5
[2025-07-27 19:03:19] 2025-07-27 23:02:46,560 | INFO     | mean y: 2303638.7
[2025-07-27 19:03:19] 2025-07-27 23:02:46,560 | INFO     | -- intersect: 146961745522.79086
[2025-07-27 19:03:19] 2025-07-27 23:02:46,560 | INFO     | intersect: 146961745522.79086
[2025-07-27 19:03:19] 2025-07-27 23:02:46,560 | INFO     | chi2: 0.15722601402661163
[2025-07-27 19:03:19] 2025-07-27 23:02:46,560 | INFO     | -- intersect: 146961745522.79086
[2025-07-27 19:03:19] 2025-07-27 23:02:46,560 | INFO     | current memory leak: -83.80 B/s (using 80 data points, chi2=0.16)
[2025-07-27 19:03:19] 2025-07-27 23:02:46,561 | INFO     | could have reported an average CPU frequency of 3263 MHz (6 samples)
[2025-07-27 19:03:19] 2025-07-27 23:02:46,561 | INFO     | ..............................
[2025-07-27 19:03:19] 2025-07-27 23:02:46,561 | INFO     | . Timing measurements:
[2025-07-27 19:03:19] 2025-07-27 23:02:46,561 | INFO     | . get job = 0 s
[2025-07-27 19:03:19] 2025-07-27 23:02:46,561 | INFO     | . initial setup = 2 s
[2025-07-27 19:03:19] 2025-07-27 23:02:46,561 | INFO     | . payload setup = 12 s
[2025-07-27 19:03:19] 2025-07-27 23:02:46,561 | INFO     | . stage-in = 0 s
[2025-07-27 19:03:19] 2025-07-27 23:02:46,561 | INFO     | . payload execution = 5302 s
[2025-07-27 19:03:19] 2025-07-27 23:02:46,561 | INFO     | . stage-out = 0 s
[2025-07-27 19:03:19] 2025-07-27 23:02:46,561 | INFO     | . log creation = 0 s
[2025-07-27 19:03:19] 2025-07-27 23:02:46,561 | INFO     | ..............................
[2025-07-27 19:03:19] 2025-07-27 23:02:46,642 | INFO     | 
[2025-07-27 19:03:19] 2025-07-27 23:02:46,642 | INFO     | job summary report
[2025-07-27 19:03:19] 2025-07-27 23:02:46,642 | INFO     | --------------------------------------------------
[2025-07-27 19:03:19] 2025-07-27 23:02:46,642 | INFO     | PanDA job id: 6747525678
[2025-07-27 19:03:19] 2025-07-27 23:02:46,643 | INFO     | task id: 45743349
[2025-07-27 19:03:19] 2025-07-27 23:02:46,643 | INFO     | errors: (none)
[2025-07-27 19:03:19] 2025-07-27 23:02:46,643 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 19:03:19] 2025-07-27 23:02:46,643 | INFO     | pilot state: finished 
[2025-07-27 19:03:19] 2025-07-27 23:02:46,643 | INFO     | transexitcode: 0
[2025-07-27 19:03:19] 2025-07-27 23:02:46,643 | INFO     | exeerrorcode: 0
[2025-07-27 19:03:19] 2025-07-27 23:02:46,643 | INFO     | exeerrordiag: 
[2025-07-27 19:03:19] 2025-07-27 23:02:46,643 | INFO     | exitcode: 0
[2025-07-27 19:03:19] 2025-07-27 23:02:46,643 | INFO     | exitmsg: OK
[2025-07-27 19:03:19] 2025-07-27 23:02:46,643 | INFO     | cpuconsumptiontime: 36797 s
[2025-07-27 19:03:19] 2025-07-27 23:02:46,643 | INFO     | nevents: 400
[2025-07-27 19:03:19] 2025-07-27 23:02:46,643 | INFO     | neventsw: 0
[2025-07-27 19:03:19] 2025-07-27 23:02:46,643 | INFO     | pid: 3757075
[2025-07-27 19:03:19] 2025-07-27 23:02:46,643 | INFO     | pgrp: 3757075
[2025-07-27 19:03:19] 2025-07-27 23:02:46,643 | INFO     | corecount: 8
[2025-07-27 19:03:19] 2025-07-27 23:02:46,643 | INFO     | event service: False
[2025-07-27 19:03:19] 2025-07-27 23:02:46,644 | INFO     | sizes: {0: 2397424, 7: 2397686, 11: 2397714, 5319: 2424246, 5321: 2433244, 5324: 2433300, 5331: 2433622}
[2025-07-27 19:03:19] 2025-07-27 23:02:46,644 | INFO     | --------------------------------------------------
[2025-07-27 19:03:19] 2025-07-27 23:02:46,644 | INFO     | 
[2025-07-27 19:03:19] 2025-07-27 23:02:46,644 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-27 19:03:19] 2025-07-27 23:02:46,670 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:46,671 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:46,671 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:46,671 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:46,671 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:46,671 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:46,671 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:46,672 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:46,672 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:46,672 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:46,672 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:46,672 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:46,672 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:46,672 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:46,672 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:46,672 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:46,672 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:46,672 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 19:03:19] 2025-07-27 23:02:46,672 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:46,672 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 19:03:19] 2025-07-27 23:02:46,672 | INFO     | job 6747525678 has completed (purged errors)
[2025-07-27 19:03:19] 2025-07-27 23:02:46,672 | INFO     | overall cleanup function is called
[2025-07-27 19:03:19] 2025-07-27 23:02:47,682 | INFO     | --- collectZombieJob: --- 10, [3757075]
[2025-07-27 19:03:19] 2025-07-27 23:02:47,684 | INFO     | zombie collector waiting for pid 3757075
[2025-07-27 19:03:19] 2025-07-27 23:02:47,684 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 19:03:19] 2025-07-27 23:02:47,684 | INFO     | collected zombie processes
[2025-07-27 19:03:19] 2025-07-27 23:02:47,684 | INFO     | will attempt to kill all subprocesses of pid=3757075
[2025-07-27 19:03:19] 2025-07-27 23:02:47,978 | INFO     | process IDs to be killed: [3757075] (in reverse order)
[2025-07-27 19:03:19] 2025-07-27 23:02:48,095 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 19:03:19] 2025-07-27 23:02:48,096 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 19:03:19] 2025-07-27 23:02:48,109 | INFO     | did not find any defunct processes belonging to 3757075
[2025-07-27 19:03:19] 2025-07-27 23:02:48,120 | INFO     | did not find any defunct processes belonging to 3757075
[2025-07-27 19:03:19] 2025-07-27 23:02:48,120 | INFO     | ready for new job
[2025-07-27 19:03:19] 2025-07-27 23:02:48,120 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 19:03:19] 2025-07-27 23:02:48,122 | INFO     | ***************************************
[2025-07-27 19:03:19] 2025-07-27 23:02:48,122 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 19:03:19] 2025-07-27 23:02:48,122 | INFO     | ***************************************
[2025-07-27 19:03:19] 2025-07-27 23:02:48,122 | INFO     | 
[2025-07-27 19:03:19] 2025-07-27 23:02:48,138 | INFO     | architecture information:
[2025-07-27 19:03:19] 2025-07-27 23:02:48,138 | INFO     | executing command: cat /etc/os-release
[2025-07-27 19:03:19] 2025-07-27 23:02:48,171 | INFO     | cat /etc/os-release:
[2025-07-27 19:03:19] NAME="CentOS Linux"
[2025-07-27 19:03:19] VERSION="7 (Core)"
[2025-07-27 19:03:19] ID="centos"
[2025-07-27 19:03:19] ID_LIKE="rhel fedora"
[2025-07-27 19:03:19] VERSION_ID="7"
[2025-07-27 19:03:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 19:03:19] ANSI_COLOR="0;31"
[2025-07-27 19:03:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 19:03:19] HOME_URL="https://www.centos.org/"
[2025-07-27 19:03:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 19:03:19] 
[2025-07-27 19:03:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 19:03:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 19:03:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 19:03:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 19:03:19] 
[2025-07-27 19:03:19] 2025-07-27 23:02:48,172 | INFO     | ***************************************
[2025-07-27 19:03:19] 2025-07-27 23:02:48,677 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-27 19:03:19] 2025-07-27 23:02:48,713 | INFO     | sufficient remaining disk space (86149955584 B)
[2025-07-27 19:03:19] 2025-07-27 23:02:48,714 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 19:03:19] 2025-07-27 23:02:48,714 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 19:03:19] 2025-07-27 23:02:48,714 | INFO     | update_server=False
[2025-07-27 19:03:19] 2025-07-27 23:02:48,714 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 19:03:19] 2025-07-27 23:02:48,721 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:03:19] 2025-07-27 23:02:48,721 | INFO     | aborting loop
[2025-07-27 19:03:19] 2025-07-27 23:02:48,795 | INFO     | all job control threads have been joined
[2025-07-27 19:03:19] 2025-07-27 23:02:48,894 | INFO     | all data control threads have been joined
[2025-07-27 19:03:19] 2025-07-27 23:02:49,189 | INFO     | all payload control threads have been joined
[2025-07-27 19:03:19] 2025-07-27 23:02:49,720 | INFO     | [job] retrieve thread has finished
[2025-07-27 19:03:19] 2025-07-27 23:02:49,726 | INFO     | [job] job monitor thread has finished
[2025-07-27 19:03:19] 2025-07-27 23:02:49,800 | INFO     | [job] control thread has finished
[2025-07-27 19:03:19] 2025-07-27 23:02:49,900 | INFO     | [data] control thread has finished
[2025-07-27 19:03:19] 2025-07-27 23:02:49,980 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 19:03:19] 2025-07-27 23:02:50,016 | INFO     | [data] copytool_in thread has finished
[2025-07-27 19:03:19] 2025-07-27 23:02:50,031 | INFO     | [job] validate thread has finished
[2025-07-27 19:03:19] 2025-07-27 23:02:50,135 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 19:03:19] 2025-07-27 23:02:50,150 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 19:03:19] 2025-07-27 23:02:50,195 | INFO     | [payload] control thread has finished
[2025-07-27 19:03:19] 2025-07-27 23:02:50,369 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 19:03:19] 2025-07-27 23:02:50,472 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 19:03:19] 2025-07-27 23:02:50,639 | INFO     | [payload] validate_post thread has finished
[2025-07-27 19:03:19] 2025-07-27 23:02:50,745 | INFO     | [payload] failed_post thread has finished
[2025-07-27 19:03:19] 2025-07-27 23:02:51,139 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 19:03:19] 2025-07-27 23:02:51,655 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:03:19] 2025-07-27 23:02:51,988 | INFO     | [data] copytool_out thread has finished
[2025-07-27 19:03:19] 2025-07-27 23:02:52,660 | INFO     | [job] queue monitor thread has finished
[2025-07-27 19:03:19] 2025-07-27 23:02:54,159 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 19:03:19] 2025-07-27 23:02:56,198 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140342647052096)>', '<ExcThread(monitor, started 140341881599744)>']
[2025-07-27 19:03:19] 2025-07-27 23:03:01,223 | INFO     | all workflow threads have been joined
[2025-07-27 19:03:19] 2025-07-27 23:03:01,223 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 19:03:19] 2025-07-27 23:03:01,225 | INFO     | traces error code: 0
[2025-07-27 19:03:19] 2025-07-27 23:03:01,225 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 19:03:19] 2025-07-27 23:03:19,045 | INFO     | PID=3746038 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 19:03:19] 2025-07-27 23:03:19,045 | INFO     | .. there are 11 such processes running
[2025-07-27 19:03:19] 2025-07-27 23:03:19,045 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 19:03:19] 2025-07-27 23:03:19,046 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 19:03:19] 2025-07-27 23:03:19,046 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 19:03:19] 2025-07-27 23:03:19,046 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 19:03:19] 2025-07-27 23:03:19,046 | INFO     | [monitor] control thread has ended
[2025-07-27 19:03:19] 2025-07-27 23:03:19,265 [wrapper] ==== pilot stdout END ====
[2025-07-27 19:03:19] 2025-07-27 23:03:19,284 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 19:03:19] 2025-07-27 23:03:19,296 [wrapper] pilotpid: 3746038
[2025-07-27 19:03:19] 2025-07-27 23:03:19,307 [wrapper] Pilot exit status: 0
[2025-07-27 19:03:19] 2025-07-27 23:03:19,352 [wrapper] pandaids: 6747525678
[2025-07-27 19:03:19] 2025-07-27 23:03:19,493 [wrapper] cleanup supervisor_pilot 4051573 3746039
[2025-07-27 19:03:19] 2025-07-27 23:03:19,498 [wrapper] Test setup, not cleaning
[2025-07-27 19:03:19] 2025-07-27 23:03:19,511 [wrapper] apfmon messages muted
[2025-07-27 19:03:19] 2025-07-27 23:03:19,546 [wrapper] ==== wrapper stdout END ====
[2025-07-27 19:03:19] 2025-07-27 23:03:19,578 [wrapper] ==== wrapper stderr END ====
[2025-07-27 19:03:19]  *** Error codes and diagnostics ***
[2025-07-27 19:03:19]     "exeErrorCode": 0,
[2025-07-27 19:03:19]     "exeErrorDiag": "",
[2025-07-27 19:03:19]     "pilotErrorCode": 0,
[2025-07-27 19:03:19]     "pilotErrorDiag": "",
[2025-07-27 19:03:19]  *** Listing of results directory ***
[2025-07-27 19:03:19] total 352720
[2025-07-27 19:03:19] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 12:02 pilot3.tar.gz
[2025-07-27 19:03:19] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 12:09 queuedata.json
[2025-07-27 19:03:19] -rwx------. 1 boincer umatlas     36292 Jul 27 12:11 runpilot2-wrapper.sh
[2025-07-27 19:03:19] -rw-r--r--. 1 boincer umatlas       100 Jul 27 17:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 19:03:19] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 17:33 run_atlas
[2025-07-27 19:03:19] -rw-r--r--. 1 boincer umatlas       105 Jul 27 17:33 job.xml
[2025-07-27 19:03:19] -rw-r--r--. 2 boincer umatlas 147389806 Jul 27 17:33 EVNT.45743347._002875.pool.root.1
[2025-07-27 19:03:19] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 17:33 start_atlas.sh
[2025-07-27 19:03:19] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 17:33 shared
[2025-07-27 19:03:19] -rw-r--r--. 2 boincer umatlas    542899 Jul 27 17:33 input.tar.gz
[2025-07-27 19:03:19] -rw-r--r--. 1 boincer umatlas         0 Jul 27 17:33 boinc_lockfile
[2025-07-27 19:03:19] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 17:33 pandaJob.out
[2025-07-27 19:03:19] -rw-------. 1 boincer umatlas    980117 Jul 27 17:33 agis_schedconf.cvmfs.json
[2025-07-27 19:03:19] -rw-------. 1 boincer umatlas   1593052 Jul 27 17:33 agis_ddmendpoints.agis.ALL.json
[2025-07-27 19:03:19] drwx------. 4 boincer umatlas      4096 Jul 27 17:33 pilot3
[2025-07-27 19:03:19] -rw-r--r--. 1 boincer umatlas      6896 Jul 27 18:54 init_data.xml
[2025-07-27 19:03:19] -rw-------. 1 boincer umatlas 208258293 Jul 27 19:02 HITS.45743349._052225.pool.root.1
[2025-07-27 19:03:19] -rw-r--r--. 1 boincer umatlas       530 Jul 27 19:02 boinc_task_state.xml
[2025-07-27 19:03:19] -rw-------. 1 boincer umatlas        95 Jul 27 19:02 pilot_heartbeat.json
[2025-07-27 19:03:19] -rw-------. 1 boincer umatlas      1029 Jul 27 19:02 memory_monitor_summary.json
[2025-07-27 19:03:19] -rw-------. 1 boincer umatlas    312919 Jul 27 19:02 log.45743349._052225.job.log.tgz.1
[2025-07-27 19:03:19] -rw-------. 1 boincer umatlas      7770 Jul 27 19:02 heartbeat.json
[2025-07-27 19:03:19] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 19:03 boinc_mmap_file
[2025-07-27 19:03:19] -rw-r--r--. 1 boincer umatlas        27 Jul 27 19:03 wrapper_checkpoint.txt
[2025-07-27 19:03:19] -rw-------. 1 boincer umatlas       823 Jul 27 19:03 pilotlog.txt
[2025-07-27 19:03:19] -rw-------. 1 boincer umatlas    516408 Jul 27 19:03 log.45743349._052225.job.log.1
[2025-07-27 19:03:19] -rw-------. 1 boincer umatlas       357 Jul 27 19:03 output.list
[2025-07-27 19:03:19] -rw-r--r--. 1 boincer umatlas       620 Jul 27 19:03 runtime_log
[2025-07-27 19:03:19] -rw-------. 1 boincer umatlas    849920 Jul 27 19:03 result.tar.gz
[2025-07-27 19:03:19] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 19:03 runtime_log.err
[2025-07-27 19:03:19] -rw-------. 1 boincer umatlas       654 Jul 27 19:03 6ccKDmd9I07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmPoVLDmLK5C6n.diag
[2025-07-27 19:03:19] -rw-r--r--. 1 boincer umatlas     21948 Jul 27 19:03 stderr.txt
[2025-07-27 19:03:19] HITS file was successfully produced:
[2025-07-27 19:03:19] -rw-------. 1 boincer umatlas 208258293 Jul 27 19:02 shared/HITS.pool.root.1
[2025-07-27 19:03:19]  *** Contents of shared directory: ***
[2025-07-27 19:03:19] total 348700
[2025-07-27 19:03:19] -rw-r--r--. 2 boincer umatlas 147389806 Jul 27 17:33 ATLAS.root_0
[2025-07-27 19:03:19] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 17:33 start_atlas.sh
[2025-07-27 19:03:19] -rw-r--r--. 2 boincer umatlas    542899 Jul 27 17:33 input.tar.gz
[2025-07-27 19:03:19] -rw-------. 1 boincer umatlas 208258293 Jul 27 19:02 HITS.pool.root.1
[2025-07-27 19:03:19] -rw-------. 1 boincer umatlas    849920 Jul 27 19:03 result.tar.gz
19:03:21 (3742273): run_atlas exited; CPU time 36829.070563
19:03:21 (3742273): called boinc_finish(0)

</stderr_txt>
]]>

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